SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000248449
Gene: PCDHGB8P Gene type: transcribed_unitary_pseudogene
Strand: + External links:
Genomic region: chr5:141426286-141429158 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_119300034 chr5:141474924-141497712 Sample_02_1193 Brain GBM27 34 1 493 53 2 99 1626 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGA5,PCDHGB7,PCDHGB4,PCDHGB8P
SE_02_085700929 chr5:141475010-141490056 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 929 1 320 37 2 99 1140 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGA5,PCDHGB7,PCDHGB4,PCDHGB8P
SE_02_118100876 chr5:141475108-141482018 Sample_02_1181 Brain GBM10 876 1 141 15 1 94 504 PCDHGB5,PCDHGA4,PCDHGA7,PCDHGB1,PCDHGA10,PCDHGA5,PCDHGC3,PCDHGA1,PCDHGA12,PCDHGB7,PCDHGA3,PCDHGA8,PCDHGA6,PCDHGB3,PCDHGB2,PCDHGA9,PCDHGA11,PCDHGB6,PCDHGA2,PCDHGB4,PCDHGC5,PCDHGC4,PCDHGB8P
SE_00_003800026 chr5:141475127-141526490 Sample_00_0038 Spinal cord spinal-cord_108d 26 10 1194 112 2 308 2775 PCDHGC4,PCDHGC3,PCDHGB3,PCDHGA1,PCDHGA2,PCDHGA11,PCDHGA8,PCDHGC5,PCDHGA10,PCDHGA12,PCDHGA4,PCDHGA9,PCDHGB6,DIAPH1,PCDHGA5,PCDHGB4,PCDHGB5,PCDHGB7,PCDHGA7,PCDHGB1,PCDHGA3,PCDHGA6,PCDHGB2,PCDHGB8P
SE_02_096300031 chr5:141475199-141500058 Sample_02_0963 Brain H3.3K27M_Tumor-derived cell-line_G477p6_cells 31 1 524 57 2 99 1626 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGA5,PCDHGB7,PCDHGB4,PCDHGB8P
SE_02_121200008 chr5:141475302-141497499 Sample_02_1212 Brain GBM30 8 1 485 53 2 99 1626 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGA5,PCDHGB7,PCDHGB4,PCDHGB8P
SE_00_002300079 chr5:141475384-141523336 Sample_00_0023 Embryo mesenchymal-stem-cell 79 5 1094 105 2 268 2639 PCDHGC4,PCDHGC3,PCDHGB3,PCDHGA1,PCDHGA2,PCDHGA11,PCDHGA8,PCDHGC5,PCDHGA10,PCDHGA12,PCDHGA4,PCDHGA9,PCDHGB6,DIAPH1,PCDHGA5,PCDHGB4,PCDHGB5,PCDHGB7,PCDHGA7,PCDHGB1,PCDHGA3,PCDHGA6,PCDHGB2,PCDHGB8P
SE_00_004300129 chr5:141475404-141526629 Sample_00_0043 Stomach stomach_96d 129 8 1194 112 2 307 2792 PCDHGC4,PCDHGC3,PCDHGB3,PCDHGA1,PCDHGA2,PCDHGA11,PCDHGA8,PCDHGC5,PCDHGA10,PCDHGA12,PCDHGA4,PCDHGA9,PCDHGB6,DIAPH1,PCDHGA5,PCDHGB4,PCDHGB5,PCDHGB7,PCDHGA7,PCDHGB1,PCDHGA3,PCDHGA6,PCDHGB2,PCDHGB8P
SE_02_117700485 chr5:141475425-141490870 Sample_02_1177 Brain GBM05 485 1 334 38 2 98 1275 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGA5,PCDHGB7,PCDHGB4,PCDHGB8P
SE_02_085500040 chr5:141475445-141497858 Sample_02_0855 Glioblastoma Glioblastoma neurosphere cell_HF-2927 40 1 486 53 2 98 1626 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGA5,PCDHGB7,PCDHGB4,PCDHGB8P
SE_02_003900313 chr5:141475485-141526605 Sample_02_0039 Embryo AFG 313 8 1192 112 2 307 2786 PCDHGC4,PCDHGC3,PCDHGB3,PCDHGA1,PCDHGA2,PCDHGA11,PCDHGA8,PCDHGC5,PCDHGA10,PCDHGA12,PCDHGA4,PCDHGA9,PCDHGB6,DIAPH1,PCDHGA5,PCDHGB4,PCDHGB5,PCDHGB7,PCDHGA7,PCDHGB1,PCDHGA3,PCDHGA6,PCDHGB2,PCDHGB8P
SE_02_117900041 chr5:141475498-141497094 Sample_02_1179 Brain GBM08 41 1 469 53 2 98 1626 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGA5,PCDHGB7,PCDHGB4,PCDHGB8P
SE_02_119701013 chr5:141475516-141478975 Sample_02_1197 Brain GBM33 1013 1 64 8 1 87 501 PCDHGB5,PCDHGA4,PCDHGA7,PCDHGB1,PCDHGA10,PCDHGA5,PCDHGC3,PCDHGA1,PCDHGA12,PCDHGB7,PCDHGA3,PCDHGA8,PCDHGA6,PCDHGB3,PCDHGB2,PCDHGA9,PCDHGA11,PCDHGB6,PCDHGA2,PCDHGB4,PCDHGC5,PCDHGC4,PCDHGB8P
SE_02_001900018 chr5:141475664-141525676 Sample_02_0019 Embryo Neural crest cells 18 13 1173 111 2 300 2698 PCDHGC4,PCDHGC3,PCDHGB3,PCDHGA1,PCDHGA2,PCDHGA11,PCDHGA8,PCDHGC5,PCDHGA10,PCDHGA12,PCDHGA4,PCDHGA9,PCDHGB6,DIAPH1,PCDHGA5,PCDHGB4,PCDHGB5,PCDHGB7,PCDHGA7,PCDHGB1,PCDHGA3,PCDHGA6,PCDHGB2,PCDHGB8P
Genomic distribution of SEs associated with PCDHGB8P
Genome Browser

The strength of the tissue affected by the gene

Expression of PCDHGB8P

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)