SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID:
Gene: LOC101928272 Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_125300003 chr10:8900836-9211679 Sample_02_1253 Mammary gland CAMA1 ER+/FGFR1-amplified 3 88 8556 160 102 784 0 LOC105755953,LOC101928272
SE_02_053200014 chr10:9137244-9243990 Sample_02_0532 Mammary gland T47D 14 25 2890 1 7 320 0 LOC101928272,LINC00709
SE_02_146500029 chr10:9171275-9229973 Sample_02_1465 Ovary CAOV4cis 29 16 1598 1 4 161 0 LOC101928272,LINC00709
SE_02_052700033 chr10:9174392-9220583 Sample_02_0527 Mammary gland MCF7_WT 33 20 1253 1 3 133 0 LOC101928272,LINC00709
SE_02_115800028 chr10:9174416-9229207 Sample_02_1158 Mammary gland MCF7_siYTHDC1_E2 28 11 1507 1 4 152 0 LOC101928272,LINC00709
SE_02_123400022 chr10:9174513-9244413 Sample_02_1234 Mammary gland T47D_Full 22 24 1869 1 6 242 0 LOC101928272,LINC00709
SE_02_052600041 chr10:9174539-9219708 Sample_02_0526 Mammary gland MCF7 TRPS1 KO 41 12 1225 1 3 127 0 LOC101928272,LINC00709
SE_02_085000076 chr10:9174649-9216000 Sample_02_0850 Mammary gland MCF7L-P_FOXA1-Dox 76 22 1114 1 3 112 0 LOC101928272,LINC00709
SE_02_157500024 chr10:9174678-9220944 Sample_02_1575 Mammary gland MCF7_Mock 24 20 1256 1 3 133 0 LOC101928272,LINC00709
SE_02_157600027 chr10:9175113-9219752 Sample_02_1576 Mammary gland MCF7_CPI-455 27 22 1211 1 3 127 0 LOC101928272,LINC00709
SE_02_157700048 chr10:9175148-9219728 Sample_02_1577 Mammary gland MCF7_DAC 48 10 1209 1 3 127 0 LOC101928272,LINC00709
SE_02_108600035 chr10:9175157-9230198 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 35 11 1503 1 4 153 0 LOC101928272,LINC00709
SE_02_062500125 chr10:9175177-9211460 Sample_02_0625 Mammary gland WS8_4OHT 125 8 963 1 3 106 0 LOC101928272,LINC00709
SE_01_011300032 chr10:9175182-9219697 Sample_01_0113 Mammary gland MCF-7 32 19 1205 1 3 127 0 LOC101928272,LINC00709
SE_02_157800052 chr10:9175199-9219989 Sample_02_1578 Mammary gland MCF7_DAC+455 52 14 1214 1 3 131 0 LOC101928272,LINC00709
SE_02_062700123 chr10:9176109-9219673 Sample_02_0627 Mammary gland WS8_VEH 123 8 1173 1 3 123 0 LOC101928272,LINC00709
SE_02_085200578 chr10:9176944-9214064 Sample_02_0852 Mammary gland MCF7L-P 578 13 993 1 3 106 0 LOC101928272,LINC00709,LOC105755953
SE_02_115900580 chr10:9176944-9214064 Sample_02_1159 Mammary gland MCF7 580 13 993 1 3 106 0 LOC101928272,LINC00709,LOC105755953
SE_02_062300125 chr10:9176945-9221644 Sample_02_0623 Mammary gland TAMR_E2 125 11 1209 1 3 129 0 LOC101928272,LINC00709
SE_02_062400068 chr10:9176999-9239617 Sample_02_0624 Mammary gland TAMR_VEH 68 12 1685 1 6 216 0 LOC101928272,LINC00709
SE_02_056800114 chr10:9177034-9219644 Sample_02_0568 Mammary gland MCF7L_E2_4h 114 12 1150 1 3 123 0 LOC101928272,LINC00709
SE_02_080900017 chr10:9178278-9229830 Sample_02_0809 Mammary gland T47D Serum 17 7 1410 1 4 149 0 LOC101928272,LINC00709
SE_02_109300022 chr10:9179082-9230744 Sample_02_1093 Mammary gland T47D_shCtrl_shRING1B_24hr 22 12 1407 1 4 150 0 LOC101928272,LINC00709
SE_02_146400057 chr10:9181367-9211189 Sample_02_1464 Ovary CAOV4 57 9 792 1 2 79 0 LOC101928272,LINC00709
SE_02_081000143 chr10:9183256-9210635 Sample_02_0810 Mammary gland T47D noSerum 143 18 718 0 2 76 0 LOC101928272,LINC00709,LOC105755953
SE_02_109200022 chr10:9184845-9230742 Sample_02_1092 Mammary gland T47D_shCtrl_24hr 22 10 1220 0 3 125 0 LOC101928272,LINC00709
SE_02_108700037 chr10:9184850-9230642 Sample_02_1087 Mammary gland T47D_shCtrl_shRING1B_0 37 11 1218 0 3 124 0 LOC101928272,LINC00709,LOC105755953
SE_02_109100029 chr10:9185105-9230408 Sample_02_1091 Mammary gland T47D_shCtrl_shRING1B_8hr 29 16 1211 0 3 124 0 LOC101928272,LINC00709
SE_02_109000020 chr10:9185254-9230029 Sample_02_1090 Mammary gland T47D_shCtrl_8hr 20 9 1201 0 3 124 0 LOC101928272,LINC00709
SE_02_108800054 chr10:9185776-9230072 Sample_02_1088 Mammary gland T47D_shCtrl_45min 54 7 1198 0 3 124 0 LOC101928272,LINC00709
SE_02_108900066 chr10:9185911-9230154 Sample_02_1089 Mammary gland T47D_shCtrl_shRING1B_45min 66 10 1197 0 3 122 0 LOC101928272,LINC00709
SE_02_088400404 chr10:9205259-9275729 Sample_02_0884 Colon LoVo 404 19 1916 0 8 179 0 LINC00709,LOC101928272
SE_02_124800347 chr10:9205361-9265372 Sample_02_1248 Bladder RT4 347 20 1608 0 7 178 0 LOC101928272,LINC00709
SE_02_050700035 chr10:9207465-9274406 Sample_02_0507 Esophagus TE7_1 35 33 1822 0 8 171 0 LOC101928272,LINC00709
SE_02_094800151 chr10:9208699-9275635 Sample_02_0948 Pharyng Detroit562 151 18 1817 0 8 169 0 LINC00709,LOC101928272
SE_01_011100117 chr10:9208773-9263250 Sample_01_0111 Brain SK-N-SH 117 14 1467 0 7 160 0 LOC101928272,LINC00709
SE_02_136700089 chr10:9209476-9267630 Sample_02_1367 Pancreas Capan1-untreated 89 24 1541 0 7 166 0 LOC101928272,LINC00709
SE_02_125800193 chr10:9213795-9268107 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 193 14 1437 0 6 159 0 LOC101928272,LINC00709
SE_02_152500400 chr10:9228423-9256196 Sample_02_1525 Stomach N87 DMSO 400 9 690 0 3 111 0 LOC101928272,LINC00709
SE_02_071301143 chr10:9228542-9265749 Sample_02_0713 Pancreas BxPC3_sgTP63 1143 11 957 0 5 123 0 LOC101928272,LINC00709
SE_02_071800100 chr10:9229530-9267487 Sample_02_0718 Pancreas PATU8988S_GFP_DOX 100 9 968 0 5 116 0 LOC101928272,LINC00709
SE_02_072200198 chr10:9235362-9265730 Sample_02_0722 Pancreas PATU8988S_TP63dN_DOX 198 9 786 0 5 101 0 LOC101928272,LINC00709
SE_02_137100324 chr10:9235523-9267387 Sample_02_1371 Pancreas Patu899S-untreated 324 13 809 0 5 102 0 LOC101928272,LINC00709
SE_02_070300481 chr10:9235986-9267380 Sample_02_0703 Pancreas PATU8988S WT 481 5 798 0 4 100 0 LOC101928272,LINC00709
SE_01_011100501 chr10:9278554-9302035 Sample_01_0111 Brain SK-N-SH 501 4 613 0 2 105 0 LINC00709,LOC101928272
Genomic distribution of SEs associated with LOC101928272
Genome Browser

The strength of the tissue affected by the gene

Expression of LOC101928272

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)