Sample overview


Search result

SE ID SE Region Size Rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_157700255 chr1:1058514-1081501 22987 255 9 715 46 2 27 1353 RNF223,C1ORF159,ISG15,AGRN
SE_02_157700119 chr1:109239004-109278177 39173 119 10 1177 94 23 504 4092 CELSR2,SARS,PSRC1,MYBPHL
SE_02_157700168 chr1:150560216-150579657 19441 168 5 511 48 3 81 798 ADAMTSL4,MCL1,ADAMTSL4-AS1,ENSA,FALEC,MIR4257
SE_02_157700124 chr1:151987063-152000122 13059 124 4 305 35 1 47 346 S100A10,NBPF18P,S100A11
SE_02_157700133 chr1:152034179-152051409 17230 133 4 342 36 0 35 277 S100A11,LOC100131107,TCHHL1,NBPF18P,S100A10
SE_02_157700263 chr1:154999229-155018257 19028 263 6 400 20 2 626 1578 ZBTB7B,CKS1B,PBXIP1,SHC1,DCST2,PYGO2,LENEP,ADAM15,EFNA4,LOC100505666,MIR4258,FLAD1,DCST1
SE_02_157700088 chr1:16143006-16189604 46598 88 15 1297 144 4 172 455 EPHA2,RSG1,ARHGEF19
SE_02_157700057 chr1:181088732-181142568 53836 57 20 1497 109 7 384 457 IER5,LOC101928973,MR1,STX6
SE_02_157700216 chr1:201274386-201310995 36609 216 12 1098 104 5 177 268 PKP1
SE_02_157700203 chr1:201459251-201482592 23341 203 6 674 54 2 131 629 PHLDA3,TNNI1,CSRP1,RPS10P7
SE_02_157700011 chr1:202006971-202119071 112100 11 36 3093 164 7 191 1554 ELF3,PTPRVP,MIR6740,GPR37L1,ARL8A,PTPN7,RNPEP,LGR6,TIMM17A
SE_02_157700186 chr1:204285616-204332330 46714 186 13 1231 127 5 145 0 PLEKHA6,LINC00628
SE_02_157700084 chr1:218344655-218402057 57402 84 19 1534 65 8 292 398 TGFB2,TGFB2-AS1,MIR548F3,TGFB2-OT1
SE_02_157700079 chr1:218474292-218499027 24735 79 14 639 15 11 104 0 MIR548F3,TGFB2-OT1
SE_02_157700258 chr1:234598889-234613803 14914 258 6 405 23 2 0 780 IRF2BP2,LOC101927787,LINC00184
SE_02_157700129 chr1:234956773-234999087 42314 129 15 1305 62 5 179 308 LOC101927851
SE_02_157700189 chr1:235059725-235093361 33636 189 13 401 57 1 11 0 LINC01348,SNORA14B,TOMM20
SE_02_157700212 chr1:23553847-23599051 45204 212 16 1337 58 2 246 584 ID3,E2F2,LOC101928163,MDS2
SE_02_157700194 chr1:246689752-246750099 60347 194 15 1949 253 3 57 357 SCCPDH,LINC01341
SE_02_157700238 chr1:42924428-42967829 43401 238 13 1269 154 5 224 1262 SLC2A1-AS1,SLC2A1
SE_02_157700208 chr1:43530212-43558532 28320 208 9 843 59 5 204 507 PTPRF
SE_02_157700198 chr1:51552166-51572703 20537 198 9 534 52 1 63 0 OSBPL9,EPS15
SE_02_157700248 chr1:8169427-8213082 43655 248 12 1329 43 2 35 0 LOC102724539
SE_02_157700146 chr10:112741055-112816315 75260 146 28 2036 20 1 391 136 VTI1A,LOC103344931
SE_02_157700099 chr10:132395373-132422676 27303 99 6 1050 69 1 130 926 PWWP2B,C10ORF91,LRRC27,INPP5A,C10orf91
SE_02_157700055 chr10:29098585-29164933 66348 55 25 2032 12 4 97 0 LYZL1,SVIL-AS1
SE_02_157700071 chr10:33236871-33307373 70502 71 27 2003 35 10 381 320 NRP1
SE_02_157700090 chr10:5486298-5519784 33486 90 10 1110 79 4 42 408 CALML5,CALML3-AS1,CALML3,NET1
SE_02_157700113 chr10:5539049-5555459 16410 113 2 527 18 1 42 0 CALML3,CALML5,CALML3-AS1,NET1,GDI2
SE_02_157700161 chr10:62075362-62116355 40993 161 18 1081 31 8 282 818 ARID5B
SE_02_157700037 chr10:8044870-8086158 41288 37 15 1359 40 25 398 1693 GATA3-AS1,GATA3,FLJ45983
SE_02_157700257 chr10:8856145-8876241 20096 257 13 574 0 0 0 0 LOC105755953,FLJ45983,GATA3
SE_02_157700048 chr10:9175148-9219728 44580 48 10 1209 1 3 127 0 LOC101928272,LINC00709
SE_02_157700187 chr10:93427075-93482683 55608 187 27 1606 213 7 135 294 MYOF,CEP55,FFAR4
SE_02_157700021 chr11:118907269-118930978 23709 21 6 568 45 3 428 659 BCL9L,MIR4492,CXCR5,UPK2,FOXR1,RPS25,ABCG4,SLC37A4,VPS11,CCDC84
SE_02_157700185 chr11:126339581-126387667 48086 185 15 1310 108 6 135 735 DCPS,ST3GAL4,ST3GAL4-AS1
SE_02_157700078 chr11:61129620-61174145 44525 78 15 1253 177 49 88 1084 VPS37C,PGA3,PGA4,CD5
SE_02_157700244 chr11:61965492-61987009 21517 244 6 528 57 10 54 542 FTH1,RAB3IL1,BEST1
SE_02_157700116 chr11:65416061-65428598 12537 116 4 377 12 2 42 885 NEAT1,SLC25A45,FRMD8,MIR612,DPF2,CDC42EP2,SCYL1
SE_02_157700024 chr11:65470429-65510819 40390 24 15 1151 120 4 50 963 MALAT1,SCYL1,LTBP3,NEAT1,MIR612,SPDYC,SLC25A45,EHBP1L1,CAPN1,SSSCA1,FRMD8
SE_02_157700181 chr11:66106411-66147408 40997 181 19 950 86 3 0 0 PACS1,SF3B2
SE_02_157700134 chr11:69101734-69135971 34237 134 15 1175 101 3 90 0 LOC338694,MIR3164,TPCN2
SE_02_157700184 chr11:69636787-69656409 19622 184 6 613 14 2 143 1149 CCND1,ORAOV1,FGF19
SE_02_157700115 chr11:72774518-72791892 17374 115 5 370 31 0 118 428 MIR4692,STARD10,ARAP1,ATG16L2
SE_02_157700262 chr11:75325726-75353264 27538 262 9 681 32 1 148 251 ARRB1,MIR326,RPS3,SNORD15A
SE_02_157700152 chr11:80688436-80729678 41242 152 17 1207 0 7 63 0 LOC101928944
SE_02_157700034 chr11:85786765-85853473 66708 34 24 1747 189 7 138 137 SYTL2,CCDC83
SE_02_157700121 chr11:86456337-86502666 46329 121 14 1279 125 4 131 363 ME3,CCDC81,C11ORF73
SE_02_157700237 chr12:120224602-120237952 13350 237 5 307 14 0 57 132 PXN,PXN-AS1,GCN1,RPLP0
SE_02_157700239 chr12:121799765-121807275 7510 239 1 156 9 0 165 787 SETD1B,LINC01089,RHOF
SE_02_157700094 chr12:12558416-12608800 50384 94 8 1450 46 6 110 200 DUSP16,CREBL2
SE_02_157700062 chr12:12786582-12845793 59211 62 18 1800 83 5 118 1323 APOLD1,DDX47,MIR613,RPL13AP20,GPRC5A
SE_02_157700040 chr12:12869712-12901529 31817 40 9 989 54 2 52 383 RPL13AP20,GPRC5A,MIR614,GPRC5D
SE_02_157700117 chr12:131855827-131897355 41528 117 16 1159 75 0 42 427 ULK1,PUS1,MMP17,EP400
SE_02_157700141 chr12:46255442-46270483 15041 141 7 367 16 4 57 494 SLC38A1
SE_02_157700241 chr12:47070746-47121243 50497 241 11 1354 75 9 132 612 PCED1B,AMIGO2
SE_02_157700032 chr12:52140687-52166536 25849 32 8 831 57 0 31 0 OR7E47P,KRT80,LINC00592,C12ORF80,NR4A1,C12orf80,GRASP,ACVR1B,ATG101,C12ORF44
SE_02_157700106 chr12:52185355-52196090 10735 106 1 361 40 1 50 311 KRT80,LINC00592,KRT7,C12ORF80
SE_02_157700142 chr12:52242143-52250873 8730 142 1 251 17 1 34 702 KRT7,LINC00592,C12ORF80,KRT81
SE_02_157700156 chr12:52276732-52288841 12109 156 8 425 62 3 47 583 KRT81,KRT86,KRT7,KRT83
SE_02_157700019 chr12:52859664-52929113 69449 19 26 2098 271 5 168 1059 KRT8,KRT18,KRT4,KRT79,KRT78,EIF4B,SPRYD3
SE_02_157700012 chr12:52942199-52993634 51435 12 8 1431 122 5 22 796 KRT18,KRT8,EIF4B,CSAD,SPRYD3,LOC283335
SE_02_157700157 chr12:53216264-53236572 20308 157 11 464 33 0 384 670 RARG,MFSD5,ITGB7,CSAD,ESPL1,ZNF740
SE_02_157700174 chr12:6195964-6237668 41704 174 15 1262 76 8 120 725 CD9
SE_02_157700199 chr12:63843211-63871044 27833 199 9 650 58 3 47 89 SRGAP1,TMEM5-AS1
SE_02_157700058 chr12:79509345-79567723 58378 58 26 1648 92 2 118 0 MIR1252,PAWR
SE_02_157700224 chr12:79683899-79693081 9182 224 3 211 7 0 75 419 PAWR
SE_02_157700266 chr12:87426022-87444382 18360 266 6 514 12 2 15 0 MKRN9P
SE_02_157700170 chr12:89750208-89776398 26190 170 14 647 50 0 78 0 LINC00936,ATP2B1,LOC338758
SE_02_157700190 chr12:97552702-97575919 23217 190 6 565 15 2 185 215 MIR135A2
SE_02_157700175 chr13:22962255-22996876 34621 175 9 1272 43 1 14 0 BASP1P1,SGCG
SE_02_157700139 chr13:33089334-33128356 39022 139 9 1207 40 6 191 853 STARD13
SE_02_157700111 chr13:45511206-45547206 36000 111 24 989 108 2 86 633 COG3,ERICH6B
SE_02_157700230 chr14:103127906-103173846 45940 230 14 1531 206 2 51 1253 TNFAIP2,LINC00605,EXOC3L4,CDC42BPB
SE_02_157700153 chr14:105464860-105477725 12865 153 1 405 19 0 97 1783 MTA1,CRIP2,C14ORF80,CRIP1,TMEM121,LOC100507437
SE_02_157700132 chr14:35330556-35356425 25869 132 7 857 106 1 43 0 PSMA6,NFKBIA,FAM177A1,KIAA0391,SRP54
SE_02_157700045 chr14:37582690-37600446 17756 45 7 388 21 6 246 735 TTC6,FOXA1
SE_02_157700103 chr14:49997746-50019609 21863 103 6 626 69 3 42 698 LINC01588,LINC01599,MIR6076,C14orf182,ARF6
SE_02_157700089 chr14:55089400-55125150 35750 89 6 901 115 22 29 0 LGALS3,MAPK1IP1L,DLGAP5
SE_02_157700218 chr14:61513264-61539123 25859 218 8 741 54 16 71 109 PRKCH,LOC101927780,FLJ22447
SE_02_157700023 chr14:65221710-65270554 48844 23 14 1493 140 8 62 58 LOC100128233,FUT8
SE_02_157700233 chr14:67961274-67979185 17911 233 10 405 9 0 77 0 RAD51B
SE_02_157700270 chr14:68162825-68193921 31096 270 15 720 15 15 191 0 RAD51B
SE_02_157700163 chr14:68547284-68589852 42568 163 16 1167 38 5 253 0 RAD51B,ZFP36L1
SE_02_157700060 chr14:68773770-68824912 51142 60 11 1382 39 10 384 1034 ZFP36L1
SE_02_157700188 chr14:69642774-69667335 24561 188 10 637 30 0 104 87 SUSD6
SE_02_157700036 chr14:75514816-75572781 57965 36 23 1750 130 8 109 347 BATF,FLVCR2,LOC102724153,C14orf1,TTLL5
SE_02_157700022 chr14:77003101-77053319 50218 22 17 1434 114 11 501 1041 IRF2BPL,LOC283575,CIPC,LOC102724190
SE_02_157700077 chr14:77300807-77317489 16682 77 5 451 38 3 0 354 POMT2,NGB,GSTZ1,MIR1260A
SE_02_157700068 chr14:96057002-96123237 66235 68 25 2231 192 8 31 1221 C14ORF132,BDKRB2
SE_02_157700138 chr14:99561489-99604048 42559 138 13 1366 107 1 150 298 CCDC85C,HHIPL1
SE_02_157700176 chr15:100711304-100734290 22986 176 9 795 27 2 52 0 ASB7
SE_02_157700096 chr15:67104717-67153192 48475 96 17 1351 95 16 103 160 SMAD3
SE_02_157700102 chr15:92633881-92667959 34078 102 10 1090 77 4 117 226 FAM174B
SE_02_157700082 chr15:92797455-92841061 43606 82 14 1346 40 0 50 0 LINC01578,ASB9P1,CHD2,FAM174B
SE_02_157700232 chr15:92867473-92885543 18070 232 9 489 8 2 69 313 LINC01578,CHD2,MIR3175,LOC100507217
SE_02_157700205 chr15:95871718-95923348 51630 205 13 1374 7 4 505 0 NR2F2
SE_02_157700242 chr15:96330675-96337750 7075 242 1 148 0 0 231 900 NR2F2,MIR1469,NR2F2-AS1
SE_02_157700018 chr15:98844888-98916185 71297 18 24 2317 46 5 301 687 IGF1R,MIR4714
SE_02_157700126 chr16:10577418-10629862 52444 126 15 1981 125 2 93 255 TEKT5,EMP2
SE_02_157700114 chr16:68731565-68798437 66872 114 18 1796 203 3 119 289 CDH1,MIR7641-2,TANGO6,CDH3
SE_02_157700108 chr16:70681313-70716499 35186 108 13 1065 114 0 216 1597 VAC14,MTSS1L,VAC14-AS1
SE_02_157700135 chr16:72908079-72961612 53533 135 15 1805 73 4 453 761 ZFHX3
SE_02_157700041 chr16:72989016-73071776 82760 41 28 2371 78 11 705 430 ZFHX3,HCCAT5
SE_02_157700069 chr16:74998084-75071649 73565 69 22 2302 146 4 144 429 ZNRF1,LDHD,WDR59,ZFP1
SE_02_157700101 chr16:75243656-75307033 63377 101 13 2066 242 9 163 1121 BCAR1,CFDP1,CTRB2,CTRB1,LOC100506281
SE_02_157700144 chr16:80607231-80622433 15202 144 5 641 9 4 4 272 CDYL2,LINC01227,LOC102724084
SE_02_157700110 chr16:81265815-81292096 26281 110 7 912 33 4 64 537 BCO1,GAN,PKD1L2,BCMO1
SE_02_157700177 chr16:84093881-84120358 26477 177 13 977 102 2 51 390 MBTPS1,DNAAF1,HSDL1,TAF1C
SE_02_157700030 chr16:84982842-85031377 48535 30 18 1823 254 7 45 523 KIAA0513,ZDHHC7
SE_02_157700025 chr16:85416200-85495107 78907 25 27 3208 95 3 202 0 MIR5093,GSE1,C16orf74
SE_02_157700100 chr16:85509861-85528489 18628 100 7 719 6 0 54 0 GSE1
SE_02_157700148 chr16:85550860-85572379 21519 148 9 753 5 0 213 0 GSE1
SE_02_157700251 chr16:85608701-85617935 9234 251 4 355 0 0 108 312 GSE1
SE_02_157700031 chr16:88737752-88785956 48204 31 14 2325 201 15 116 2170 LOC339059,LOC100289580,PIEZO1,CDT1,CTU2,RNF166,MIR4722,APRT,GALNS,TRAPPC2L
SE_02_157700159 chr16_KI270728v1_random:1752533-1757173 4640 159 6 0 0 0 0 0
SE_02_157700260 chr17:15641748-15660509 18761 260 8 492 52 0 42 278 TRIM16,ZNF286A,CDRT1
SE_02_157700092 chr17:17681341-17753076 71735 92 20 1898 128 1 304 311 RAI1,SMCR2,SMCR5,RAI1-AS1
SE_02_157700246 chr17:17940113-17972392 32279 246 10 785 89 1 88 87 TOM1L2,LRRC48
SE_02_157700166 chr17:49880375-49910702 30327 166 16 861 65 2 176 0 FLJ45513,TAC4,DLX4,KAT7,DLX3
SE_02_157700095 chr17:50890202-50955032 64830 95 23 1811 150 3 174 0 TOB1-AS1,TOB1
SE_02_157700059 chr17:57340042-57379853 39811 59 12 1036 23 8 243 0 MSI2
SE_02_157700201 chr17:57431088-57460025 28937 201 9 842 29 5 140 0 MSI2,LOC101927557
SE_02_157700010 chr17:59747167-59805343 58176 10 25 1222 122 5 91 71 VMP1,PTRH2,MIR21,RPS6KB1,TUBD1
SE_02_157700002 chr17:59827436-59870643 43207 2 8 1041 94 3 121 463 TUBD1,MIR21,VMP1,RPS6KB1,SKA2,PTRH2,RNFT1
SE_02_157700015 chr17:61219665-61238261 18596 15 5 442 6 2 54 0 BCAS3,TBX2-AS1
SE_02_157700046 chr17:61351669-61359929 8260 46 4 224 3 0 29 197 BCAS3,TBX2-AS1,TBX2
SE_02_157700052 chr17:61398074-61402341 4267 52 1 118 10 0 94 437 TBX2,TBX2-AS1,C17ORF82
SE_02_157700104 chr17:61554493-61569929 15436 104 4 441 12 1 42 0 NACA2
SE_02_157700038 chr17:62702439-62728418 25979 38 12 671 36 5 116 617 MARCH10,MRC2
SE_02_157700127 chr17:62777937-62821164 43227 127 14 1228 46 0 189 430 MARCH10
SE_02_157700265 chr17:62949897-62968534 18637 265 7 442 34 2 131 0 TANC2,MIR633
SE_02_157700042 chr17:66942016-66967096 25080 42 12 734 54 1 147 166 CACNG4,CACNG1,CACNG5
SE_02_157700061 chr17:75525678-75565928 40250 61 15 1286 176 1 109 1448 LLGL2,CASKIN2,MIR6785,MYO15B,TSEN54,C17ORF109
SE_02_157700264 chr17:75638801-75645538 6737 264 1 168 7 1 15 320 SMIM5,RECQL5,SMIM6,SAP30BP
SE_02_157700169 chr17:81327735-81347077 19342 169 4 637 50 0 103 217 TMEM105,LINC00482,LOC100130370,SLC38A10
SE_02_157700256 chr17:81977549-82014102 36553 256 12 1307 73 0 136 1574 ASPSCR1,PYCR1,MYADML2,MAFG-AS1,GPS1,LRRC45,DCXR,RAC3,STRA13,RFNG,MAFG,NOTUM
SE_02_157700172 chr17:82847595-82892200 44605 172 13 1654 229 2 0 197 TBCD,ZNF750
SE_02_157700204 chr17:83055801-83110587 54786 204 23 2129 213 1 117 815 METRNL,B3GNTL1
SE_02_157700215 chr17_KI270860v1_alt:1626-52304 50678 215 19 0 0 0 0 0 METRNL,B3GNTL1
SE_02_157700200 chr19:1165481-1208256 42775 200 10 1419 77 3 73 664 STK11,SBNO2,ATP5D,CBARP,MIDN
SE_02_157700081 chr19:12777399-12796597 19198 81 6 432 38 1 305 517 JUNB,MIR5684,BEST2,RTBDN,ASNA1,HOOK2,RNASEH2A,PRDX2,C19ORF43,MAST1
SE_02_157700091 chr19:13151933-13174391 22458 91 8 603 42 2 94 519 IER2,STX10,LYL1,TRMT1,NACC1
SE_02_157700210 chr19:14496479-14518436 21957 210 12 719 62 3 64 567 DNAJB1,PTGER1,MIR639,GIPC1,TECR
SE_02_157700211 chr19:16069828-16100230 30402 211 13 994 69 3 54 815 TPM4,LINC00905,HSH2D,RAB8A
SE_02_157700140 chr19:18362988-18389005 26017 140 9 754 71 3 24 1630 PGPEP1,MIR3189,GDF15,ISYNA1,LRRC25,LSM4,SSBP4
SE_02_157700173 chr19:34994303-35013037 18734 173 9 589 52 2 71 947 GRAMD1A,HPN,SCN1B,ZNF792
SE_02_157700179 chr19:38636250-38667896 31646 179 11 909 74 1 133 274 EIF3K,ACTN4,MAP4K1
SE_02_157700221 chr19:39397953-39410988 13035 221 3 317 17 0 185 1156 ZFP36,MIR4530,MED29,PLEKHG2,SUPT5H,RPS16,PAF1
SE_02_157700033 chr19:41732445-41799409 66964 33 23 1873 159 3 59 893 CEACAM3,CEACAM6,LYPD4,CEACAM7,CEACAM5,DMRTC2
SE_02_157700063 chr19:45090667-45130945 40278 63 11 1326 166 5 43 352 PPP1R37,GEMIN7,TRAPPC6A,NKPD1,BLOC1S3,ZNF296
SE_02_157700217 chr19:46856395-46875469 19074 217 7 496 17 0 83 0 SNAR-E,AP2S1,ARHGAP35
SE_02_157700154 chr19:47093503-47125232 31729 154 6 918 25 1 177 493 ZC3H4,TMEM160,SAE1,NPAS1,ARHGAP35
SE_02_157700150 chr19:53593200-53626917 33717 150 22 1243 44 4 0 385 LOC284379,MIR512-2,ZNF331,MIR512-1,DPRX,MIR498,MIR520E,MIR1323
SE_02_157700249 chr2:142856831-142881129 24298 249 12 583 45 1 28 52 KYNU
SE_02_157700072 chr2:160204726-160271223 66497 72 18 1741 126 6 195 83 LOC100505984,ITGB6
SE_02_157700240 chr2:20179921-20233941 54020 240 16 1790 154 7 229 1265 SDC1
SE_02_157700226 chr2:215965246-215989501 24255 226 12 661 24 3 32 0 MREG
SE_02_157700236 chr2:217313228-217340991 27763 236 13 685 29 0 76 210 DIRC3
SE_02_157700213 chr2:218395442-218408061 12619 213 4 467 27 1 126 1822 SLC11A1,CTDSP1,MIR26B,CATIP-AS2,CATIP,VIL1,CATIP-AS1
SE_02_157700043 chr2:220162552-220234558 72006 43 25 2015 50 14 372 0 MIR4268,SLC4A3
SE_02_157700105 chr2:220262929-220296804 33875 105 8 995 38 6 206 0 MIR4268,SLC4A3
SE_02_157700125 chr2:226113519-226161873 48354 125 17 1265 60 10 129 113 LOC646736
SE_02_157700206 chr2:233479638-233492412 12774 206 5 433 32 5 26 304 USP40
SE_02_157700165 chr2:236691863-236750521 58658 165 22 2063 36 2 151 0 ACKR3
SE_02_157700044 chr2:237471781-237509000 37219 44 14 1241 161 2 26 369 MLPH,MIR6811,PRLH,RAB17
SE_02_157700098 chr2:43217685-43233335 15650 98 6 494 21 0 220 1414 THADA,ZFP36L2,LINC01126
SE_02_157700066 chr2:43272666-43324633 51967 66 16 1444 109 8 48 333 THADA,LINC01126,ZFP36L2
SE_02_157700006 chr2:43386872-43487352 100480 6 17 2882 244 31 293 176 THADA
SE_02_157700207 chr2:54557047-54581056 24009 207 9 740 99 4 78 175 SPTBN1,RPL23AP32
SE_02_157700247 chr2:74834209-74876348 42139 247 12 1330 83 9 108 617 HK2,LINC01291
SE_02_157700196 chr2:96867512-96892768 25256 196 11 706 51 2 176 684 FAM178B,SEMA4C,LOC101927053,ANKRD39,ANKRD23
SE_02_157700064 chr20:19756156-19786609 30453 64 14 803 31 6 48 0 RIN2
SE_02_157700167 chr20:31698747-31723986 25239 167 12 573 42 3 205 362 ABALON,BCL2L1,TPX2
SE_02_157700008 chr20:47303554-47335290 31736 8 11 920 3 0 45 505 ZMYND8,LOC100131496
SE_02_157700005 chr20:47351880-47393100 41220 5 16 1142 14 4 124 555 ZMYND8,LOC100131496
SE_02_157700067 chr20:47432532-47465767 33235 67 10 915 37 5 0 0 NCOA3
SE_02_157700028 chr20:47487265-47507866 20601 28 6 474 31 0 22 410 NCOA3
SE_02_157700225 chr20:47527685-47546886 19201 225 7 428 41 0 11 0 NCOA3
SE_02_157700076 chr20:47783915-47817466 33551 76 11 1002 66 18 83 259 SULF2
SE_02_157700047 chr20:48807722-48834334 26612 47 12 713 47 3 65 196 PREX1
SE_02_157700202 chr20:50138297-50167801 29504 202 9 807 117 2 25 345 TMEM189-UBE2V1,TMEM189,CEBPB-AS1,CEBPB,UBE2V1,LINC01273
SE_02_157700147 chr20:50399006-50441776 42770 147 13 1260 57 2 56 0 PTPN1
SE_02_157700083 chr20:50641469-50678247 36778 83 9 1047 67 1 40 0 LOC100506175,FAM65C,MIR1302-5
SE_02_157700004 chr20:50710284-50769518 59234 4 20 1619 129 4 144 595 PARD6B,BCAS4,FAM65C,ADNP,PTPN1,MOCS3
SE_02_157700014 chr20:50786922-50799915 12993 14 4 338 46 0 16 166 BCAS4
SE_02_157700049 chr20:51715198-51767221 52023 49 20 1688 138 2 0 129 ATP9A,SALL4
SE_02_157700155 chr20:51797346-51812769 15423 155 7 430 55 2 0 136 SALL4,ATP9A
SE_02_157700009 chr20:53579043-53596235 17192 9 6 423 5 1 106 449 ZNF217,LOC101927770
SE_02_157700007 chr20:53620527-53663183 42656 7 16 1211 18 2 54 0 ZNF217
SE_02_157700097 chr20:53677993-53692906 14913 97 5 427 11 1 30 0 ZNF217
SE_02_157700003 chr20:53738340-53808191 69851 3 32 2087 23 8 25 0 SUMO1P1
SE_02_157700001 chr20:53827670-53884514 56844 1 19 1638 21 2 43 152 SUMO1P1
SE_02_157700109 chr20:53905893-53922057 16164 109 9 482 9 1 15 0 SUMO1P1
SE_02_157700017 chr20:54064129-54097699 33570 17 11 1039 111 11 29 181 BCAS1,MIR4756
SE_02_157700016 chr20:54114114-54128162 14048 16 11 389 2 5 11 0 BCAS1,MIR4756,CYP24A1
SE_02_157700054 chr20:56550908-56610548 59640 54 25 1767 47 12 7 0 FAM209A,FAM209B,GCNT7,TFAP2C
SE_02_157700253 chr20:56625167-56632491 7324 253 4 201 4 1 99 517 TFAP2C
SE_02_157700093 chr20:57262983-57267251 4268 93 2 95 6 0 81 448 BMP7,BMP7-AS1
SE_02_157700035 chr20:57686733-57719532 32799 35 10 939 26 0 108 885 NKILA,PMEPA1
SE_02_157700122 chr20:57744496-57783404 38908 122 11 1197 26 6 32 0 PMEPA1,NKILA
SE_02_157700178 chr20:62349813-62376965 27152 178 9 1051 96 0 164 779 LAMA5,LAMA5-AS1,CABLES2,RPS21,MIR4758,ADRM1
SE_02_157700160 chr21:35206419-35276911 70492 160 23 1964 19 4 192 0 RUNX1
SE_02_157700137 chr21:40314656-40342092 27436 137 18 817 2 3 3 152 DSCAM,DSCAM-AS1
SE_02_157700180 chr21:40366761-40389094 22333 180 9 686 0 9 32 307 DSCAM-AS1,DSCAM
SE_02_157700243 chr21:41677233-41686217 8984 243 3 307 3 0 7 119 LINC00111,LINC00112,LINC00479
SE_02_157700271 chr21:43331051-43346449 15398 271 8 548 10 1 33 0 LINC00322,TCONS_00029157
SE_02_157700220 chr21:43709820-43728420 18600 220 8 574 60 0 17 187 PDXK,CSTB
SE_02_157700112 chr22:28796033-28829396 33363 112 16 795 82 2 60 352 XBP1,CCDC117
SE_02_157700143 chr3:107955868-108007249 51381 143 22 1582 102 6 265 0 LINC00636
SE_02_157700219 chr3:129483518-129508270 24752 219 12 776 95 4 173 872 IFT122,H1FOO,RHO,MBD4
SE_02_157700131 chr3:134349580-134382693 33113 131 18 912 41 6 218 1806 AMOTL2,MIR6827
SE_02_157700193 chr3:14222992-14256681 33689 193 14 1066 86 7 82 0 XPC,LSM3
SE_02_157700128 chr3:149272404-149302126 29722 128 8 916 72 12 0 0 TM4SF18
SE_02_157700261 chr3:149383848-149403572 19724 261 11 524 37 1 48 0 TM4SF1-AS1,TM4SF1,TM4SF18
SE_02_157700183 chr3:161362128-161374044 11916 183 4 293 41 3 51 191 SPTSSB
SE_02_157700020 chr3:161389935-161424702 34767 20 7 881 87 7 55 0 LOC101243545,SPTSSB
SE_02_157700222 chr3:192877797-192915250 37453 222 13 1200 97 6 80 0 MB21D2
SE_02_157700231 chr3:194122414-194143832 21418 231 8 625 16 1 317 492 HES1
SE_02_157700214 chr4:37440048-37482620 42572 214 15 1063 136 1 219 961 NWD2,C4ORF19
SE_02_157700259 chr5:133240217-133266248 26031 259 17 807 26 4 114 84 FSTL4,MIR1289-2
SE_02_157700075 chr5:139635918-139668640 32722 75 8 695 30 0 464 202 CXXC5
SE_02_157700252 chr5:147808689-147838277 29588 252 18 699 32 0 49 182 SPINK1,JAKMIP2,SCGB3A2
SE_02_157700120 chr5:170744299-170775003 30704 120 13 989 42 7 50 0 GABRP
SE_02_157700051 chr5:17275291-17344681 69390 51 25 1934 60 6 175 280 BASP1,LOC401177
SE_02_157700013 chr5:178075465-178132719 57254 13 18 1656 110 5 193 1891 RMND5B,N4BP3,NHP2,HNRNPAB
SE_02_157700118 chr5:67204227-67246159 41932 118 14 1259 50 5 89 0 CD180
SE_02_157700136 chr5:96614343-96665176 50833 136 22 1433 179 3 74 358 CAST,LOC101929710
SE_02_157700026 chr6:151614599-151717119 102520 26 44 2871 124 73 170 589 CCDC170,ESR1,C6orf211,AKAP12,RMND1,ZBTB2
SE_02_157700123 chr7:101855801-101890476 34675 123 12 977 17 2 102 0 CUX1
SE_02_157700272 chr7:102390973-102397750 6777 272 2 168 15 0 8 205 LOC100630923,PRKRIP1,LOC100289561,ORAI2,SPDYE6,MIR548O
SE_02_157700268 chr7:105011358-105015930 4572 268 1 150 3 0 94 636 KMT2E,KMT2E-AS1,LINC01004
SE_02_157700223 chr7:108334996-108359666 24670 223 13 690 78 2 45 0 NRCAM
SE_02_157700191 chr7:128429558-128459292 29734 191 7 717 117 1 33 357 HILPDA,METTL2B,IMPDH1
SE_02_157700254 chr7:2519827-2533297 13470 254 5 449 23 1 158 1251 LFNG,MIR4648,IQCE,BRAT1,GRIFIN
SE_02_157700130 chr7:47562600-47611239 48639 130 19 1444 59 0 104 143 TNS3,LINC01447,C7ORF65
SE_02_157700087 chr7:5417241-5430492 13251 87 4 401 3 0 263 846 TNRC18
SE_02_157700080 chr7:73736461-73771361 34900 80 7 851 67 2 47 998 ABHD11,CLDN3,MIR4284,STX1A,ABHD11-AS1
SE_02_157700149 chr7:73809338-73834103 24765 149 6 611 78 2 52 947 CLDN4,WBSCR27,WBSCR28,CLDN3,ABHD11,STX1A,TBL2
SE_02_157700145 chr7:76282596-76319249 36653 145 16 1234 129 2 114 1822 SRRM3,HSPB1,YWHAG
SE_02_157700192 chr7:99200020-99230780 30760 192 10 877 165 1 2 100 KPNA7,MYH16
SE_02_157700234 chr8:100949885-100954066 4181 234 1 136 7 0 61 652 YWHAZ
SE_02_157700151 chr8:101354902-101389818 34916 151 13 918 38 2 22 316 NACAP1
SE_02_157700073 chr8:101433066-101475466 42400 73 15 1249 14 6 74 0 GRHL2
SE_02_157700158 chr8:101488491-101505291 16800 158 5 434 6 2 96 116 GRHL2
SE_02_157700171 chr8:101600390-101611614 11224 171 4 331 49 0 31 0 GRHL2
SE_02_157700197 chr8:102804649-102811459 6810 197 2 151 17 0 67 670 AZIN1
SE_02_157700053 chr8:118848330-118899250 50920 53 18 1338 110 11 118 0 TNFRSF11B
SE_02_157700195 chr8:118914028-118962514 48486 195 20 1274 152 43 229 514 TNFRSF11B
SE_02_157700267 chr8:119051242-119072195 20953 267 11 553 28 1 106 71 COLEC10
SE_02_157700164 chr8:121143829-121176538 32709 164 14 941 13 3 37 0 SNTB1
SE_02_157700227 chr8:122779815-122788444 8629 227 4 209 7 0 160 169 ZHX2
SE_02_157700245 chr8:126555678-126580858 25180 245 6 725 28 9 143 611 FAM84B
SE_02_157700039 chr8:127780508-127834127 53619 39 18 1503 56 5 78 207 MIR1204,MYC,CASC11
SE_02_157700107 chr8:127848685-127877470 28785 107 20 840 12 4 40 93 PVT1
SE_02_157700162 chr8:128138488-128179160 40672 162 9 1230 30 4 137 72 MIR1208
SE_02_157700250 chr8:142673975-142683669 9694 250 4 345 56 16 27 842 PSCA,THEM6,JRK,LOC100288181,LY6K
SE_02_157700056 chr8:143933481-143971645 38164 56 6 1202 116 5 255 2232 PLEC,MIR661,PARP10,GRINA,SPATC1
SE_02_157700228 chr8:38784907-38813925 29018 228 10 697 43 1 59 485 TACC1
SE_02_157700229 chr8:80067418-80105128 37710 229 14 956 81 2 17 98 TPD52,MRPS28
SE_02_157700027 chr8:95057225-95114523 57298 27 17 1514 201 5 27 694 MIR3150A,MIR3150B,NDUFAF6,PLEKHF2
SE_02_157700070 chr9:114978424-115036348 57924 70 27 1625 32 13 0 728 TNC,TNFSF8
SE_02_157700086 chr9:127536557-127583445 46888 86 16 1318 175 6 147 304 FAM129B,STXBP1
SE_02_157700029 chr9:129455425-129498797 43372 29 10 1276 83 0 123 419 LINC00963
SE_02_157700085 chr9:133862272-133898340 36068 85 12 1351 58 3 23 0 VAV2,BRD3
SE_02_157700065 chr9:134352480-134389697 37217 65 17 1370 54 2 92 123 RXRA,MIR4669
SE_02_157700235 chr9:134404130-134416347 12217 235 4 455 3 4 47 1094 RXRA,MIR4669
SE_02_157700050 chr9:22081221-22141660 60439 50 28 1839 14 63 111 429 CDKN2B-AS1,CDKN2B
SE_02_157700269 chr9:33158286-33173240 14954 269 6 348 32 0 79 280 B4GALT1-AS1,B4GALT1
SE_02_157700182 chr9:33226694-33250054 23360 182 7 611 87 1 38 317 SPINK4,CHMP5,BAG1,NFX1
SE_02_157700209 chr9:92968305-93003817 35512 209 9 917 72 0 16 504 FGD3,LOC101927954
SE_02_157700074 chr9:94902869-94928574 25705 74 4 674 42 0 123 191 C9ORF3,MIR2278

SE annotation visualization


Information description of sample and annotation

Case ID: Name:GSM2570008
Input ID: Name:GSM2570006
Common SNP: dbSNP
eQTL: GTEx, HaploReg v4.1, PancanQTL
Risk SNP : GWAS Catalog, GWASdb v2.0
TFBS: TFBS Conserved of UCSC
CRISPR/Cas9 target site: CRISPR Targets of UCSC

Software and parameters used

Read Mapping: bowtie(v2.4.4) -p 10 -x -S -U
Peak Calling: macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb