SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000170004
Gene: CHD3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr17:7884796-7912760 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_115100256 chr17:7816680-7857546 Sample_02_1151 Mammary gland MCF-7_UNTR 256 14 1258 77 4 753 4439 DNAH2,NAA38,KDM6B,TMEM88,CYB5D1,CHD3,SCARNA21,CNTROB,TRAPPC1,KCNAB3,SAT2
SE_02_069400074 chr17:7825053-7845307 Sample_02_0694 Lung NCI-H82_no infection 74 14 540 35 1 354 842 DNAH2,KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,CD68,TP53,TRAPPC1,EFNB3,KCNAB3,FXR2
SE_02_046500399 chr17:7825371-7846535 Sample_02_0465 Adipose subcutaneous adipocytes 399 6 573 36 1 390 1112 DNAH2,KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,TRAPPC1,KCNAB3
SE_02_092800040 chr17:7832921-7846404 Sample_02_0928 Peripheral blood neutrophils_Ecoli 40 1 358 17 1 333 676 DNAH2,KDM6B,CYB5D1,CHD3,TMEM88,NAA38,TRAPPC1,KCNAB3
SE_02_098901744 chr17:7833104-7838220 Sample_02_0989 Kidney kidney cortex_WT 1744 1 132 9 1 81 163 DNAH2,KDM6B,CHD3,TMEM88,NAA38,CYB5D1,CNTROB,TP53,ALOX15B,WRAP53,EFNB3,KCNAB3
SE_02_107100058 chr17:7833132-7852488 Sample_02_1071 Blood Jurkat_WT 58 5 612 31 1 519 1972 DNAH2,KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,WRAP53,TRAPPC1,EFNB3,KCNAB3,MPDU1
SE_02_152900131 chr17:7833180-7848738 Sample_02_1529 Peripheral blood neutrophils_0BC75 131 1 473 23 1 437 1248 DNAH2,KDM6B,CYB5D1,CHD3,TMEM88,NAA38,TRAPPC1,KCNAB3
SE_04_001000073 chr17:7833299-7852468 Sample_04_0010 Lung A549 TGFb 73 3 602 30 1 519 1937 DNAH2,KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,WRAP53,KCNAB3
SE_00_005200136 chr17:7833307-7857612 Sample_00_0052 Heart left ventricle 3y 136 6 767 38 2 631 3014 DNAH2,NAA38,KDM6B,TMEM88,CYB5D1,CHD3,SCARNA21,CNTROB,SHBG,CD68,SLC35G6,TP53,WRAP53,TRAPPC1,EFNB3,PER1,KCNAB3,SAT2
SE_02_087500516 chr17:7833309-7846698 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 516 1 356 16 1 338 658 DNAH2,KDM6B,CYB5D1,CHD3,TMEM88,NAA38,GUCY2D,CNTROB,WRAP53,TRAPPC1
SE_02_153000150 chr17:7833312-7853516 Sample_02_1530 Peripheral blood neutrophils_0BA0X 150 1 634 30 1 534 2149 DNAH2,KDM6B,CYB5D1,CHD3,TMEM88,NAA38,TRAPPC1,KCNAB3
SE_02_120300697 chr17:7833338-7852600 Sample_02_1203 Brain NB1 697 3 603 30 1 526 1940 DNAH2,KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,WRAP53,EFNB3,KCNAB3,TRAPPC1,SAT2
SE_00_004600604 chr17:7833350-7837387 Sample_00_0046 Heart right ventricle_34y 604 1 104 8 1 67 107 DNAH2,KDM6B,CHD3,TMEM88,NAA38,CYB5D1,CNTROB,SLC35G6,WRAP53,TRAPPC1,EFNB3,ATP1B2,KCNAB3
SE_02_108200209 chr17:7833353-7846388 Sample_02_1082 Retina retina 209 1 338 16 1 333 568 DNAH2,KDM6B,CYB5D1,CHD3,TMEM88,NAA38,GUCY2D,CNTROB,TRAPPC1,DLG4,PER1,KCNAB3
SE_01_010700687 chr17:7833418-7839369 Sample_01_0107 Esophagus esophagus squamous epithelium 687 1 150 9 1 110 90 DNAH2,CYB5D1,CHD3,TMEM88,KDM6B,NAA38,POLR2A,CNTROB,WRAP53,TRAPPC1,PLSCR3,TP53,EFNB3,KCNAB3,ZBTB4,SAT2
SE_01_009800855 chr17:7833439-7839944 Sample_01_0098 Heart left ventricle_51y 855 1 161 9 1 118 131 DNAH2,KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,SLC35G6,TP53,WRAP53,TRAPPC1,PER1,KCNAB3
SE_02_120400343 chr17:7833442-7852786 Sample_02_1204 Brain NB2 343 6 610 30 1 526 1951 DNAH2,KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,WRAP53,TRAPPC1,SHBG,EFNB3,ATP1B2,KCNAB3,FXR2
SE_02_089500392 chr17:7833507-7845410 Sample_02_0895 Heart left ventricle_LV1259 392 2 299 15 1 300 326 DNAH2,KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,SHBG,CD68,SLC35G6,TP53,WRAP53,TRAPPC1,EFNB3,PER1,KCNAB3,SAT2
SE_01_010900089 chr17:7833514-7845918 Sample_01_0109 Colon transverse colon_54y 89 1 321 15 1 323 427 DNAH2,KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,SHBG,TP53,ALOX15B,WRAP53,TRAPPC1,EFNB3,ATP1B2,KCNAB3,SAT2
SE_02_153100169 chr17:7833515-7846365 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 169 1 335 16 1 333 531 DNAH2,KDM6B,CYB5D1,CHD3,TMEM88,NAA38,TRAPPC1,KCNAB3
SE_02_093500093 chr17:7833531-7845397 Sample_02_0935 Retinal Pigmented Epithelial RPE188_Con 93 2 298 15 1 299 321 DNAH2,KDM6B,CYB5D1,CHD3,TMEM88,NAA38,POLR2A,CNTROB,SHBG,SLC35G6,WRAP53,TRAPPC1,TP53,PER1,ZBTB4,SAT2,TNFSF12-TNFSF13,KRBA2
SE_01_009900611 chr17:7833538-7836899 Sample_01_0099 Colon transverse colon 611 1 87 7 1 46 72 DNAH2,KDM6B,CHD3,TMEM88,NAA38,CYB5D1,CNTROB,SHBG,TP53,WRAP53,TRAPPC1,EFNB3,SAT2
SE_02_092700084 chr17:7833546-7845897 Sample_02_0927 Peripheral blood neutrophils_US 84 1 318 15 1 323 417 DNAH2,KDM6B,CYB5D1,CHD3,TMEM88,NAA38,TRAPPC1,KCNAB3
SE_02_089900877 chr17:7833560-7837691 Sample_02_0899 Heart left ventricle_LV1400 877 1 109 8 1 68 64 DNAH2,KDM6B,CHD3,TMEM88,NAA38,CYB5D1,CNTROB,SLC35G6,TP53,WRAP53,TRAPPC1,PER1,KCNAB3
SE_00_005700128 chr17:7833560-7845415 Sample_00_0057 Heart right ventricle 3y 128 8 298 15 1 300 319 DNAH2,KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,SHBG,SLC35G6,TP53,WRAP53,TRAPPC1,EFNB3,ATP1B2,PER1,KCNAB3
SE_02_113900322 chr17:7833572-7845778 Sample_02_1139 Retinal Pigmented Epithelial RPE1-anaphase/telophase 322 2 314 15 1 322 399 DNAH2,KDM6B,CYB5D1,CHD3,TMEM88,NAA38,POLR2A,CNTROB,SHBG,SLC35G6,WRAP53,TRAPPC1,TP53,PER1,ZBTB4,SAT2,TNFSF12-TNFSF13,KRBA2
SE_02_047700356 chr17:7833604-7851562 Sample_02_0477 Colon intestinal epithelial organoids_139a 356 3 566 28 1 497 1679 DNAH2,KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,SHBG,SLC35G6,TP53,WRAP53,TRAPPC1,EFNB3,KCNAB3,SAT2
SE_02_112800505 chr17:7833642-7844906 Sample_02_1128 Adipose visceral adipose_CTL_HCTR10 505 6 278 15 1 293 204 DNAH2,KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,TRAPPC1,KCNAB3
SE_02_113200737 chr17:7833660-7845636 Sample_02_1132 Pancreas KLM1 wt 737 8 305 15 1 320 357 DNAH2,KDM6B,CYB5D1,CHD3,TMEM88,NAA38,GUCY2D,CNTROB,TP53,ALOX15B,WRAP53,TRAPPC1,EFNB3,ATP1B2,KCNAB3
SE_00_005500064 chr17:7833665-7845544 Sample_00_0055 Spleen spleen 34y 64 1 300 15 1 312 329 DNAH2,KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,CTDNEP1,WRAP53,EFNB3,KCNAB3,FXR2,SAT2
SE_02_047800277 chr17:7833678-7851717 Sample_02_0478 Colon normal colon mucosa 277 4 571 28 1 499 1703 DNAH2,KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,SHBG,TP53,ALOX15B,WRAP53,TRAPPC1,EFNB3,ATP1B2,KCNAB3,SAT2
SE_02_088300662 chr17:7833726-7845447 Sample_02_0883 Ovary SVOG3e_cells_Dox_12h_transduced with V5-FOXL2 C134W 662 2 297 15 1 308 309 DNAH2,KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,WRAP53,TRAPPC1,SHBG,ATP1B2,TNFSF13,DVL2,KCNAB3,SAT2,TNFSF12-TNFSF13
SE_01_011200108 chr17:7833764-7845496 Sample_01_0112 Embryonic kidney HEK293_encode 108 4 299 15 1 312 309 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,POLR2A,CNTROB,TP53,WRAP53,PHF23,EFNB3,ATP1B2,KCNAB3,MPDU1
SE_04_000900461 chr17:7833792-7845360 Sample_04_0009 Lung A549 461 2 294 15 1 299 274 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,WRAP53,KCNAB3
SE_02_093600084 chr17:7833805-7850897 Sample_02_0936 Retinal Pigmented Epithelial RPE188_TnT 84 4 544 27 1 490 1514 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,POLR2A,CNTROB,SHBG,SLC35G6,WRAP53,TRAPPC1,TP53,PER1,ZBTB4,SAT2,TNFSF12-TNFSF13,KRBA2
SE_02_094700411 chr17:7833809-7845282 Sample_02_0947 Tongue Cal27 411 3 291 15 1 299 261 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,ALOX15B,ALOXE3,TRAPPC1
SE_02_107600127 chr17:7833815-7845556 Sample_02_1076 Mammary gland MCF7_TET2WT-E2 127 2 298 15 1 312 307 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TRAPPC1,KCNAB3,SAT2
SE_04_000500185 chr17:7833845-7845448 Sample_04_0005 Lung A549 FOXA2 overexpressed 185 3 293 15 1 308 279 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,WRAP53,KCNAB3
SE_02_132200294 chr17:7833846-7845407 Sample_02_1322 Connective Tissue HT1080_WT 294 4 292 15 1 300 267 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,SHBG,TP53,WRAP53,TRAPPC1,EFNB3,KCNAB3,SAT2,KRBA2
SE_02_107700179 chr17:7833847-7845945 Sample_02_1077 Mammary gland MCF7_TET2KO-E2 179 2 314 15 1 324 381 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TRAPPC1,KCNAB3,SAT2
SE_02_093800046 chr17:7833854-7852757 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 46 4 602 30 1 526 1872 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,POLR2A,CNTROB,SHBG,SLC35G6,WRAP53,TRAPPC1,TP53,PER1,ZBTB4,SAT2,TNFSF12-TNFSF13,KRBA2
SE_02_111600642 chr17:7833864-7845367 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 642 3 292 15 1 299 256 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,POLR2A,CNTROB,CD68,TP53,ZBTB4,WRAP53,TRAPPC1,EFNB3,EIF4A1,KCNAB3,MPDU1,C17orf59,GUCY2D,SLC35G6,ALOX15B,SHBG
SE_02_059100012 chr17:7833864-7852380 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 12 4 588 29 1 519 1797 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,RPL26,CNTROB,CD68,SLC35G6,WRAP53,TRAPPC1,TP53,SHBG,EIF4A1,KCNAB3,ZBTB4,SAT2,TMEM256,KRBA2
SE_01_010400103 chr17:7833865-7845615 Sample_01_0104 Lung upper lobe of left lung 103 1 300 15 1 317 310 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,ZBTB4,ALOX15B,WRAP53,TRAPPC1,SAT2,TNFSF12-TNFSF13
SE_02_132000180 chr17:7833881-7845462 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 180 4 294 15 1 310 275 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,SHBG,TP53,WRAP53,TRAPPC1,EFNB3,KCNAB3,SAT2,KRBA2
SE_02_158200179 chr17:7833896-7845760 Sample_02_1582 Renal OS-RC-2 179 3 307 15 1 322 336 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,WRAP53,TRAPPC1,TNFSF13,KCNAB3
SE_02_094100249 chr17:7833898-7844927 Sample_02_0941 Brain T98G 249 3 276 15 1 293 160 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,WRAP53,SHBG,EFNB3,EIF4A1,KCNAB3,TMEM107,SAT2
SE_02_130900649 chr17:7833911-7838186 Sample_02_1309 Artery Pulmonary artery endothelial cells_Control 649 1 110 8 1 76 2 KDM6B,CHD3,TMEM88,NAA38,CYB5D1,CNTROB,TP53,WRAP53,ALOXE3,TRAPPC1,KCNAB3,SAT2
SE_02_049101280 chr17:7833911-7845426 Sample_02_0491 Pharyng Detroit 562-Control 1280 3 292 15 1 304 258 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,WRAP53,TRAPPC1,KCNAB3,MPDU1
SE_02_132100235 chr17:7833919-7845287 Sample_02_1321 Connective Tissue HT1080_FUS-DDIT3 235 4 288 15 1 299 234 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,SHBG,TP53,WRAP53,TRAPPC1,EFNB3,KCNAB3,SAT2,KRBA2
SE_02_094600377 chr17:7833919-7851831 Sample_02_0946 Tongue HN12 377 3 569 28 1 507 1674 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,ALOX15B,ALOXE3,TRAPPC1
SE_02_059300014 chr17:7833926-7852282 Sample_02_0593 Fetal spleenocytes fetal naive T cells 14 5 583 29 1 514 1762 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,CTDNEP1,WRAP53,EFNB3,KCNAB3,FXR2,SAT2
SE_02_049200756 chr17:7833928-7845470 Sample_02_0492 Pharyng Detroit 562_LPS 756 4 291 15 1 311 268 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,WRAP53,TRAPPC1,KCNAB3,MPDU1
SE_02_111500607 chr17:7833932-7845230 Sample_02_1115 Liver HepG2 607 5 284 15 1 298 220 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,CTDNEP1,TRAPPC1,TP53,EFNB3,KCNAB3
SE_02_088100864 chr17:7833933-7845452 Sample_02_0881 Ovary SVOG3e cells_Dox_12h_transduced_V5-FOXL2_WT 864 2 291 15 1 308 263 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,WRAP53,TRAPPC1,SHBG,ATP1B2,TNFSF13,DVL2,KCNAB3,SAT2,TNFSF12-TNFSF13
SE_04_000600249 chr17:7833934-7845291 Sample_04_0006 Lung A549 GFP control 249 3 288 15 1 299 234 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,WRAP53,KCNAB3
SE_02_149600174 chr17:7833935-7845259 Sample_02_1496 Other monocyte-derived dendritic cells_R848_24h 174 10 285 15 1 298 222 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,ALOX15B,WRAP53,TRAPPC1,ATP1B2,KCNAB3,TNFSF12-TNFSF13
SE_02_122500105 chr17:7833938-7852474 Sample_02_1225 Bone marrow RAJI 105 5 590 30 1 519 1813 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,WRAP53,TRAPPC1,EFNB3,KCNAB3,SOX15
SE_02_088000709 chr17:7833939-7845260 Sample_02_0880 Ovary SVOG3e cells_noDox_transduced_V5-FOXL2_WT 709 2 286 15 1 298 222 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,WRAP53,TRAPPC1,SHBG,ATP1B2,TNFSF13,DVL2,KCNAB3,SAT2,TNFSF12-TNFSF13
SE_02_116500099 chr17:7833950-7844366 Sample_02_1165 Testis round spermatids 99 5 252 15 1 279 100 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,WRAP53,TRAPPC1,TP53,SHBG,EFNB3,KCNAB3,FXR2,GABARAP,SENP3,DNAH2,SAT2
SE_00_004900140 chr17:7833950-7845238 Sample_00_0049 Small intestine small intestine 30y 140 7 283 15 1 298 221 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,GUCY2D,CNTROB,CD68,TP53,TRAPPC1,SHBG,EFNB3,ATP1B2,KCNAB3,MPDU1
SE_02_092900055 chr17:7833955-7845962 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 55 5 310 15 1 324 365 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,WRAP53,TRAPPC1,TP53,EFNB3,ATP1B2,KCNAB3
SE_02_088200555 chr17:7833976-7845524 Sample_02_0882 Ovary SVOG3e_cells_noDox_transduced with V5-FOXL2 C134W 555 2 290 15 1 312 277 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,WRAP53,TRAPPC1,SHBG,ATP1B2,TNFSF13,DVL2,KCNAB3,SAT2,TNFSF12-TNFSF13
SE_02_144800349 chr17:7833976-7845555 Sample_02_1448 Adipose SW872_YAP5SA 349 3 291 15 1 312 281 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,WRAP53,TRAPPC1,TP53,EFNB3,KCNAB3,VAMP2,SAT2
SE_02_131900201 chr17:7833977-7844941 Sample_02_1319 Connective Tissue HT1080_DDIT3 201 4 271 15 1 295 156 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,SHBG,TP53,WRAP53,TRAPPC1,EFNB3,KCNAB3,SAT2,KRBA2
SE_02_116300076 chr17:7833980-7845238 Sample_02_1163 Embryonic kidney HEK293 no dox 76 7 281 15 1 298 221 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,POLR2A,CNTROB,TP53,WRAP53,PHF23,EFNB3,ATP1B2,KCNAB3,MPDU1
SE_02_087900969 chr17:7833980-7845395 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 969 2 286 15 1 299 248 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,WRAP53,TRAPPC1,SHBG,ATP1B2,TNFSF13,DVL2,KCNAB3,SAT2,TNFSF12-TNFSF13
SE_02_087800873 chr17:7833980-7845487 Sample_02_0878 Ovary SVOG3e cells_noDox_control 873 2 289 15 1 312 274 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,WRAP53,TRAPPC1,SHBG,ATP1B2,TNFSF13,DVL2,KCNAB3,SAT2,TNFSF12-TNFSF13
SE_02_093000341 chr17:7833980-7845528 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 341 6 290 15 1 312 277 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,WRAP53,TRAPPC1,TP53,EFNB3,ATP1B2,KCNAB3
SE_02_149400226 chr17:7833984-7845473 Sample_02_1494 Other monocyte-derived dendritic cells_0h 226 9 288 15 1 312 270 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,ALOX15B,WRAP53,TRAPPC1,ATP1B2,KCNAB3,TNFSF12-TNFSF13
SE_02_043700285 chr17:7833992-7845292 Sample_02_0437 Bone 143B 285 9 285 15 1 299 234 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,GUCY2D,CNTROB,SHBG,CD68,SLC35G6,TP53,WRAP53,TRAPPC1,PER1,KCNAB3,FXR2,VAMP2,ACAP1,ALOXE3,TMEM107,SAT2,TNFSF12-TNFSF13,KRBA2
SE_02_072500351 chr17:7833993-7844836 Sample_02_0725 Mammary gland MCF10A-YAP5SA_ctrl 351 10 265 15 1 288 130 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,GUCY2D,CNTROB,SLC35G6,TP53,WRAP53,TRAPPC1,ATP1B2,TNFSF13,KCNAB3,SAT2
SE_04_000300066 chr17:7833999-7844870 Sample_04_0003 Lung A549 TEAD4 shRNA TGFb 66 5 267 15 1 291 138 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,WRAP53,KCNAB3
SE_02_072600327 chr17:7834010-7844809 Sample_02_0726 Mammary gland MCF10A-YAP5SA_plusDOX 327 6 264 15 1 283 124 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,GUCY2D,CNTROB,SLC35G6,TP53,WRAP53,TRAPPC1,ATP1B2,TNFSF13,KCNAB3,SAT2
SE_02_120500694 chr17:7834018-7845861 Sample_02_1205 Brain NB3 694 3 304 15 1 322 344 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,WRAP53,TRAPPC1,SHBG,EFNB3,ATP1B2,KCNAB3,FXR2,DNAH2
SE_01_010500706 chr17:7834048-7844841 Sample_01_0105 Thyroid gland thyroid gland_54y 706 3 264 15 1 288 130 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,SHBG,TP53,WRAP53,TRAPPC1,EFNB3,KCNAB3
SE_02_066600267 chr17:7834065-7845356 Sample_02_0666 Prostate RWPE1 Lacz rep1 267 2 283 15 1 299 243 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,ALOX15B,WRAP53,TRAPPC1,TP53,EFNB3,KCNAB3
SE_02_151200171 chr17:7834145-7845517 Sample_02_1512 Lung Purified AT2 cells 171 4 286 15 1 312 277 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,ZBTB4,ALOX15B,WRAP53,TRAPPC1,TNFSF12-TNFSF13
SE_02_153300169 chr17:7834152-7845517 Sample_02_1533 Lung purified primary alveolar epithelial type 2 cells 169 5 286 15 1 312 277 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,ZBTB4,ALOX15B,WRAP53,TRAPPC1,TNFSF12-TNFSF13
SE_02_149500119 chr17:7834247-7845262 Sample_02_1495 Other monocyte-derived dendritic cells_R848_1h 119 11 276 15 1 298 223 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,ALOX15B,WRAP53,TRAPPC1,ATP1B2,KCNAB3,TNFSF12-TNFSF13
SE_02_066700119 chr17:7834255-7845601 Sample_02_0667 Mammary gland MCF7_FA 119 4 287 15 1 313 294 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TRAPPC1,KCNAB3
SE_02_070600314 chr17:7834257-7845368 Sample_02_0706 Pancreas SUIT2 WT 314 7 279 15 1 299 245 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TRAPPC1,TP53,SHBG,KCNAB3,SAT2
SE_02_071400305 chr17:7834260-7845510 Sample_02_0714 Pancreas SUIT2_MTV 305 6 283 15 1 312 277 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TRAPPC1,TP53,SHBG,KCNAB3,SAT2
SE_02_112700054 chr17:7834284-7844782 Sample_02_1127 Adipose visceral adipose_CTL_H465 54 9 256 15 1 281 116 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,TRAPPC1,KCNAB3
SE_02_071900317 chr17:7834290-7845269 Sample_02_0719 Pancreas SUIT2_TP63dN_DOX 317 5 276 15 1 299 227 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TRAPPC1,TP53,SHBG,KCNAB3,SAT2
SE_02_071500484 chr17:7834292-7845339 Sample_02_0715 Pancreas SUIT2_TP63dN 484 5 278 15 1 299 238 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TRAPPC1,TP53,SHBG,KCNAB3,SAT2
SE_04_000800329 chr17:7834304-7844761 Sample_04_0008 Lung A549 shRNA control 329 3 255 15 1 281 109 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,WRAP53,KCNAB3
SE_02_054500877 chr17:7834312-7845388 Sample_02_0545 Bone marrow K562 WT 877 6 278 15 1 299 248 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,POLR2A,CNTROB,CD68,TP53,ZBTB4,WRAP53,TRAPPC1,EFNB3,EIF4A1,KCNAB3,MPDU1,C17orf59,GUCY2D,SLC35G6,ALOX15B,SHBG
SE_01_011700084 chr17:7834317-7845525 Sample_01_0117 Lung fibroblast of lung 84 6 282 15 1 312 277 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,ZBTB4,ALOX15B,WRAP53,TRAPPC1,TNFSF12-TNFSF13
SE_02_151300744 chr17:7834340-7844627 Sample_02_1513 Lung Transitional AT2->1 cells 744 4 251 15 1 281 100 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,ZBTB4,ALOX15B,WRAP53,TRAPPC1,TNFSF12-TNFSF13
SE_04_000400118 chr17:7834341-7844760 Sample_04_0004 Lung A549 TEAD2 shRNA TGFb 118 4 254 15 1 281 109 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,WRAP53,KCNAB3
SE_02_066500126 chr17:7834572-7845317 Sample_02_0665 Prostate RWPE1 Schlap1 rep1 126 2 268 14 1 298 235 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,ALOX15B,WRAP53,TRAPPC1,TP53,EFNB3,KCNAB3
SE_02_100700284 chr17:7834662-7845235 Sample_02_1007 Brain Lateral temporal lobe_14T_Old 284 7 261 14 1 297 221 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,WRAP53,TRAPPC1,ACADVL,SHBG,EFNB3,KCNAB3,FXR2,SAT2
SE_02_100500288 chr17:7834723-7844847 Sample_02_1005 Brain Lateral temporal lobe_11T_Old 288 8 243 13 1 287 130 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,WRAP53,TRAPPC1,ACADVL,SHBG,EFNB3,KCNAB3,FXR2,SAT2
SE_02_151400794 chr17:7834726-7845436 Sample_02_1514 Lung Differentiated AT1-like cells 794 5 264 13 1 305 257 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,ZBTB4,ALOX15B,WRAP53,TRAPPC1,TNFSF12-TNFSF13
SE_02_046100405 chr17:7834749-7845288 Sample_02_0461 Blood MV-4-11-B cells 405 5 261 13 1 298 234 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,GUCY2D,CNTROB,TRAPPC1,KCNAB3
SE_02_071600348 chr17:7834800-7845385 Sample_02_0716 Pancreas SUIT2_GFP 348 4 262 12 1 298 248 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TRAPPC1,TP53,SHBG,KCNAB3,SAT2
SE_02_103300774 chr17:7834825-7845391 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 774 2 262 12 1 298 248 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,POLR2A,CNTROB,CD68,TP53,ZBTB4,WRAP53,TRAPPC1,EFNB3,EIF4A1,KCNAB3,MPDU1,C17orf59,GUCY2D,SLC35G6,ALOX15B,SHBG
SE_01_011500600 chr17:7834838-7844896 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 600 3 243 12 1 292 148 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,POLR2A,CNTROB,TP53,WRAP53,TRAPPC1,SHBG,EFNB3,EIF4A1,KCNAB3
SE_02_062000232 chr17:7834839-7844831 Sample_02_0620 Aortic Aortic Endothelial Cells_DF 232 4 240 12 1 287 127 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,RPL26,CNTROB,SHBG,CD68,SLC35G6,TP53,ZBTB4,WRAP53,TRAPPC1,ATP1B2,TNFSF13,KCNAB3,MPDU1,TMEM107,SAT2,TNFSF12-TNFSF13,KRBA2
SE_02_062800115 chr17:7834839-7852406 Sample_02_0628 Brain CHP-134 115 5 557 26 1 518 1796 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,WRAP53,TRAPPC1,SHBG,EFNB3,ATP1B2,KCNAB3,ZBTB4,SAT2
SE_02_111400190 chr17:7834902-7845430 Sample_02_1114 Embryonic kidney HEK293 190 3 260 12 1 305 256 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,POLR2A,CNTROB,TP53,WRAP53,PHF23,EFNB3,ATP1B2,KCNAB3,MPDU1
SE_01_010000056 chr17:7835002-7844615 Sample_01_0100 Thyroid gland thyroid gland_37y 56 7 231 12 1 280 100 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,SHBG,TP53,WRAP53,TRAPPC1,EFNB3,KCNAB3
SE_02_100600213 chr17:7835111-7851700 Sample_02_1006 Brain Lateral temporal lobe_13T_Old 213 8 527 25 1 494 1649 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,WRAP53,TRAPPC1,ACADVL,SHBG,EFNB3,KCNAB3,FXR2,SAT2
SE_02_062100145 chr17:7835141-7843985 Sample_02_0621 Aortic Aortic Endothelial Cells_UF 145 4 207 11 1 246 100 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,WRAP53,TRAPPC1,ATP1B2,KCNAB3
SE_02_084500072 chr17:7835277-7844770 Sample_02_0845 Mammary gland MCF-7_DMSO_sgARID1A-2_KO 72 7 223 12 1 278 111 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TRAPPC1,KCNAB3
SE_02_054700443 chr17:7835866-7844486 Sample_02_0547 Bone marrow K562_MYO1D_Hub_KO 443 5 199 12 1 271 100 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,GUCY2D,CNTROB,CD68,SLC35G6,TP53,ZBTB4,ALOX15B,WRAP53,TRAPPC1,SHBG,EFNB3,KCNAB3,MPDU1,C17orf59
SE_00_005000030 chr17:7835949-7844511 Sample_00_0050 Esophagus esophagus_30y 30 5 198 11 1 269 100 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TRAPPC1,TP53
SE_02_068300434 chr17:7838318-7846013 Sample_02_0683 Lung DMS114 434 1 205 7 0 239 379 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,CD68,TP53,WRAP53,TRAPPC1,KCNAB3
SE_02_090100682 chr17:7838476-7845584 Sample_02_0901 Heart left ventricle_LV1471 682 1 182 7 0 220 289 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,SHBG,CD68,SLC35G6,WRAP53,TRAPPC1,TP53,EFNB3,PER1,KCNAB3,SAT2
SE_02_093700640 chr17:7840195-7845657 Sample_02_0937 Retinal Pigmented Epithelial RPE190_Con 640 1 141 6 0 195 211 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,POLR2A,CNTROB,SHBG,SLC35G6,WRAP53,TRAPPC1,TP53,PER1,ZBTB4,SAT2,TNFSF12-TNFSF13,KRBA2
SE_02_088800983 chr17:7840217-7845553 Sample_02_0888 Heart left ventricle_LV1160 983 1 137 6 0 187 180 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,SHBG,CD68,SLC35G6,WRAP53,TRAPPC1,TP53,EFNB3,PER1,KCNAB3,SAT2
SE_02_098901466 chr17:7840247-7845983 Sample_02_0989 Kidney kidney cortex_WT 1466 1 155 5 0 199 271 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,TRAPPC1,KCNAB3
SE_02_089900657 chr17:7840627-7845798 Sample_02_0899 Heart left ventricle_LV1400 657 1 141 4 0 197 238 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,SHBG,CD68,SLC35G6,WRAP53,TRAPPC1,TP53,EFNB3,PER1,KCNAB3,SAT2
SE_02_089801306 chr17:7840674-7845824 Sample_02_0898 Heart left ventricle_LV1356 1306 1 143 4 0 197 241 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,SHBG,CD68,SLC35G6,WRAP53,TRAPPC1,TP53,EFNB3,PER1,KCNAB3,SAT2
SE_01_009800830 chr17:7840878-7845937 Sample_01_0098 Heart left ventricle_51y 830 1 141 3 0 198 260 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,SHBG,CD68,SLC35G6,WRAP53,TRAPPC1,TP53,EFNB3,PER1,KCNAB3,SAT2
SE_01_010700603 chr17:7840946-7845889 Sample_01_0107 Esophagus esophagus squamous epithelium 603 1 135 3 0 196 247 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TRAPPC1,TP53
SE_02_089000997 chr17:7840951-7845533 Sample_02_0890 Heart left ventricle_LV1200 997 1 120 3 0 186 177 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,SHBG,CD68,SLC35G6,WRAP53,TRAPPC1,TP53,EFNB3,PER1,KCNAB3,SAT2
SE_01_009900423 chr17:7841071-7844917 Sample_01_0099 Colon transverse colon 423 1 98 3 0 167 53 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,WRAP53,TRAPPC1
SE_02_130900136 chr17:7841235-7845512 Sample_02_1309 Artery Pulmonary artery endothelial cells_Control 136 1 114 3 0 186 177 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,CD68,TP53,WRAP53,TRAPPC1,SHBG,KCNAB3,SAT2
SE_00_004600710 chr17:7841298-7845648 Sample_00_0046 Heart right ventricle_34y 710 1 117 3 0 194 208 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,SHBG,SLC35G6,TP53,WRAP53,TRAPPC1,PER1
SE_02_130800277 chr17:7841409-7845536 Sample_02_1308 Artery Pulmonary artery endothelial cells_caMEK5 277 1 111 3 0 186 178 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,CD68,TP53,WRAP53,TRAPPC1,SHBG,KCNAB3,SAT2
SE_01_010400947 chr17:7883825-7890130 Sample_01_0104 Lung upper lobe of left lung 947 1 120 12 0 205 438 CHD3,CYB5D1,CNTROB,TMEM88,SCARNA21,LOC284023,KDM6B,TRAPPC1,NAA38,KCNAB3,WRAP53,TP53,PER1
SE_02_066600284 chr17:8150302-8167118 Sample_02_0666 Prostate RWPE1 Lacz rep1 284 4 488 41 0 313 1206 PER1,VAMP2,MIR4521,HES7,AURKB,ALOXE3,BORCS6,SNORD118,MIR6883,TMEM107,RPL26,CHD3,CNTROB,PFAS,C17orf59,CTC1,SLC25A35,TMEM88
SE_02_066500343 chr17:8153688-8157309 Sample_02_0665 Prostate RWPE1 Schlap1 rep1 343 2 104 7 0 96 99 MIR4521,HES7,PER1,ALOXE3,BORCS6,SNORD118,MIR6883,TMEM107,VAMP2,RPL26,CHD3,CNTROB,AURKB,PFAS,C17orf59,CTC1,SLC25A35,TMEM88
Genomic distribution of SEs associated with CHD3
Genome Browser

The strength of the tissue affected by the gene

Expression of CHD3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)