SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_094100249
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Brain
Biosample name: T98G
Genomic region: chr17:7833898-7844927
Size: 11029
Super-enhancer rank 249
Number of SE elements: 3
ChIP density(Case|Control): 13420.0872|1302.5249
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: KDM6B ;
ROSE Overlap KDM6B ;
ROSE Proximal CYB5D1 ; CHD3 ; TMEM88 ; NAA38 ;
ROSE Closest KDM6B ;
Lasso CHD3 ; CNTROB ; TP53 ; WRAP53 ; SHBG ; EFNB3 ; EIF4A1 ; KCNAB3 ; TMEM107 ; NAA38 ; SAT2 ; TMEM88 ;
PreSTIGE ;
ABC ;
BETA TMEM88 ; CHD3 ; TRAPPC1 ; CNTROB ; LOC284023 ; SCARNA21 ; NAA38 ; KDM6B ; CYB5D1 ; KCNAB3 ; RPL29P2 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_094100249 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers