Sample overview


Search result

SE ID SE Region Size Rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_149500214 chr1:110507709-110522986 15277 214 6 427 15 3 68 345 KCNA10,CYMP,LOC440602,KCNA2
SE_02_149500167 chr1:110627327-110647138 19811 167 6 503 33 3 71 67 KCNA2,KCNA3
SE_02_149500177 chr1:116496292-116509734 13442 177 10 341 16 0 8 0 LOC101929023
SE_02_149500244 chr1:145007986-145017771 9785 244 9 32 3 0 24 0 SRGAP2B
SE_02_149500250 chr1:150610704-150621972 11268 250 6 279 23 1 14 3 ADAMTSL4-AS1,MCL1,ENSA
SE_02_149500135 chr1:152034249-152048563 14314 135 4 285 33 0 34 277 S100A11,LOC100131107,TCHHL1,NBPF18P,S100A10
SE_02_149500229 chr1:157141718-157154930 13212 229 6 309 14 1 68 0 ETV3L,CYCSP52,ETV3
SE_02_149500219 chr1:15948935-15966810 17875 219 7 448 38 2 10 0 ZBTB17,C1ORF64
SE_02_149500225 chr1:160732489-160744016 11527 225 5 331 19 0 14 58 SLAMF7,CD48
SE_02_149500248 chr1:181124991-181135881 10890 248 4 310 41 2 52 0 IER5,LOC101928973,MR1
SE_02_149500019 chr1:204408897-204435286 26389 19 10 655 47 3 128 1651 PPP1R15B,PIK3C2B,PLEKHA6,LINC00628
SE_02_149500105 chr1:209720980-209747676 26696 105 10 669 57 3 33 169 HSD11B1,TRAF3IP3,C1ORF74,G0S2
SE_02_149500181 chr1:212667719-212683325 15606 181 8 423 44 4 15 0 BATF3,FAM71A
SE_02_149500155 chr1:221774888-221796080 21192 155 9 680 16 3 49 0 DUSP10,LOC101929771
SE_02_149500129 chr1:226626878-226643205 16327 129 7 486 25 3 40 998 ITPKB,ITPKB-IT1
SE_02_149500081 chr1:226661568-226680676 19108 81 7 530 25 2 72 0 ITPKB,ITPKB-IT1
SE_02_149500073 chr1:234599896-234620451 20555 73 5 572 40 2 0 780 IRF2BP2,LOC101927787,LINC00184
SE_02_149500002 chr1:234954595-235017319 62724 2 28 1912 68 7 213 308 LOC101927851
SE_02_149500158 chr1:235073080-235083763 10683 158 10 117 14 0 11 0 SNORA14B,LINC01348,TOMM20
SE_02_149500223 chr1:235892479-235917427 24948 223 8 714 62 3 40 0 MIR1537,LYST
SE_02_149500112 chr1:241533245-241552598 19353 112 7 605 62 5 9 130 KMO,FH
SE_02_149500137 chr1:26275818-26289143 13325 137 4 411 54 0 103 1681 CEP85,UBXN11,SH3BGRL3,CD52
SE_02_149500169 chr1:26574261-26584160 9899 169 7 272 17 0 17 175 RPS6KA1,MIR1976,DHDDS
SE_02_149500118 chr1:27863506-27886321 22815 118 11 666 52 1 50 922 THEMIS2,SCARNA1,PPP1R8,SMPDL3B,RPA2
SE_02_149500088 chr1:32980271-32993629 13358 88 12 332 25 0 35 113 RNF19B,AK2
SE_02_149500078 chr1:67723407-67750648 27241 78 8 713 42 6 57 0 GNG12,GADD45A
SE_02_149500147 chr1:93692781-93706250 13469 147 8 333 16 0 56 56 BCAR3
SE_02_149500033 chr10:11176243-11210677 34434 33 15 1163 14 7 81 0 CELF2
SE_02_149500014 chr10:17213307-17232319 19012 14 12 542 36 2 100 538 VIM-AS1,VIM,TRDMT1
SE_02_149500150 chr10:30529354-30557045 27691 150 6 937 38 6 19 0 LYZL2
SE_02_149500157 chr10:3803670-3812346 8676 157 7 294 1 2 77 0 KLF6
SE_02_149500012 chr10:3850453-3903307 52854 12 19 1784 67 9 126 0 KLF6
SE_02_149500113 chr10:4119858-4133136 13278 113 6 430 0 0 0 0 LOC101927964
SE_02_149500152 chr10:62613761-62638642 24881 152 10 734 36 6 99 60 ZNF365,EGR2,ADO
SE_02_149500025 chr10:69045077-69074684 29607 25 23 819 66 0 30 0 SRGN,VPS26A,DDX21,DDX50
SE_02_149500060 chr10:71358321-71379258 20937 60 14 596 51 4 25 321 SLC29A3,CDH23
SE_02_149500062 chr10:7184401-7207213 22812 62 10 730 16 3 48 253 SFMBT2
SE_02_149500196 chr10:71845881-71861283 15402 196 5 430 39 3 12 145 PSAP,CDH23
SE_02_149500193 chr10:78972823-78978577 5754 193 6 133 5 0 72 0 ZMIZ1-AS1,ZMIZ1
SE_02_149500045 chr10:80476978-80504317 27339 45 15 748 54 4 40 67 TSPAN14,LOC102723703,SH2D4B,LOC101929574
SE_02_149500200 chr10:89232370-89245087 12717 200 9 334 25 3 16 0 LIPA,CH25H
SE_02_149500040 chr11:102579625-102603560 23935 40 12 710 78 0 22 118 MMP20,MMP7
SE_02_149500017 chr11:117979316-118013008 33692 17 12 989 70 9 80 1397 IL10RA,TMPRSS13
SE_02_149500246 chr11:1849591-1856194 6603 246 4 313 29 1 16 143 LSP1,TNNI2,MIR4298,SYT8,LINC01150,MIR7847
SE_02_149500191 chr11:35139241-35145072 5831 191 5 197 16 1 19 69 CD44,LOC100507144,PDHX
SE_02_149500005 chr11:35272129-35314460 42331 5 22 1250 145 3 186 436 SLC1A2
SE_02_149500048 chr11:35336335-35364692 28357 48 8 862 69 12 53 0 SLC1A2
SE_02_149500133 chr11:47388935-47395748 6813 133 6 197 21 1 109 0 SPI1,SLC39A13,MIR4487,MYBPC3,PSMC3,DDB2,CELF1,RAPSN,KBTBD4
SE_02_149500141 chr11:47507206-47516784 9578 141 9 227 18 1 10 0 CELF1,PTPMT1
SE_02_149500070 chr11:48007322-48032565 25243 70 10 588 28 2 64 0 PTPRJ
SE_02_149500041 chr11:61955343-61973377 18034 41 8 480 42 17 106 1788 FTH1,BEST1,RAB3IL1
SE_02_149500221 chr11:62541206-62556246 15040 221 8 358 26 1 165 185 AHNAK,EEF1G,TUT1,MTA2,MIR6747,METTL12,C11orf98,B3GAT3,INTS5,BSCL2,EML3,GANAB
SE_02_149500042 chr11:65417106-65426857 9751 42 9 285 10 2 35 647 NEAT1,SLC25A45,FRMD8,MIR612,SLC22A20,EHBP1L1,LTBP3,CAPN1,FAU,MAP3K11,POLA2,MRPL49,DPF2,SSSCA1,CDC42EP2,SCYL1,TIGD3,FAM89B
SE_02_149500015 chr11:65490835-65506395 15560 15 8 499 22 3 34 933 MALAT1,SCYL1,MIR612,EHBP1L1,LTBP3,SLC25A45,FAM89B
SE_02_149500145 chr11:65811231-65818154 6923 145 7 198 34 5 35 0 MUS81,SNX32,OVOL1-AS1,OVOL1,CFL1,AP5B1,C11orf68,FOSL1,CTSW,DRAP1,CCDC85B,PACS1,RNASEH2C
SE_02_149500198 chr11:75337835-75349986 12151 198 10 304 15 0 66 0 ARRB1,RPS3,MIR326
SE_02_149500184 chr12:111397363-111408098 10735 184 5 245 17 0 67 212 SH2B3,FAM109A
SE_02_149500108 chr12:11649850-11656660 6810 108 3 196 2 0 72 101 ETV6
SE_02_149500006 chr12:11731263-11768288 37025 6 20 1060 25 7 156 93 ETV6
SE_02_149500031 chr12:11827357-11841385 14028 31 13 383 6 1 48 69 ETV6,BCL2L14
SE_02_149500011 chr12:121781451-121802897 21446 11 13 647 59 4 111 1615 RHOF,TMEM120B,LINC01089,SETD1B
SE_02_149500051 chr12:14957341-14983476 26135 51 10 762 97 5 55 294 ARHGDIB,PDE6H,LINC01489,ERP27
SE_02_149500187 chr12:26114082-26132801 18719 187 5 448 20 3 164 740 BHLHE41
SE_02_149500208 chr12:49663173-49674269 11096 208 3 268 17 2 61 211 FMNL3,PRPF40B
SE_02_149500128 chr12:64612221-64626916 14695 128 6 392 22 3 36 37 MIR548C,RASSF3,MIR548Z,TBK1
SE_02_149500170 chr12:92538619-92554843 16224 170 8 505 34 0 62 0 CLLU1OS
SE_02_149500116 chr13:28030720-28043809 13089 116 10 382 49 0 25 203 FLT3,URAD
SE_02_149500056 chr13:46163970-46180502 16532 56 11 470 26 5 38 59 LCP1,LRRC63
SE_02_149500238 chr14:105068783-105088174 19391 238 5 605 37 0 1 0 CDCA4,LOC102723354,GPR132,NUDT14
SE_02_149500154 chr14:21255471-21268275 12804 154 6 343 10 1 64 141 HNRNPC,RPGRIP1,LINC00641
SE_02_149500138 chr14:35284799-35297129 12330 138 6 332 50 2 44 125 PSMA6
SE_02_149500110 chr14:50032066-50046185 14119 110 7 406 16 0 32 527 LINC01599,LINC01588
SE_02_149500215 chr14:55098040-55118745 20705 215 7 492 59 9 10 0 LGALS3,MAPK1IP1L,GCH1,WDHD1,SOCS4
SE_02_149500195 chr14:68894437-68912318 17881 195 8 540 59 2 43 424 ACTN1
SE_02_149500146 chr14:89275996-89304667 28671 146 6 855 4 5 71 68 FOXN3
SE_02_149500142 chr15:45444827-45458061 13234 142 13 380 57 1 24 68 SPATA5L1,C15ORF48,MIR147B
SE_02_149500053 chr15:51180442-51202773 22331 53 11 616 73 3 15 0 MIR4713
SE_02_149500254 chr15:59168790-59178149 9359 254 6 342 27 4 25 244 MYO1E,MIR2116,LDHAL6B,CCNB2
SE_02_149500164 chr15:63480095-63502214 22119 164 7 559 54 1 58 0 USP3
SE_02_149500092 chr15:64881883-64898023 16140 92 10 415 78 1 32 0 ANKDD1A,PLEKHO2,SPG21,PIF1
SE_02_149500185 chr15:72226983-72238051 11068 185 3 255 26 0 47 386 PKM,GRAMD2,PARP6
SE_02_149500090 chr15:78063608-78082193 18585 90 10 499 54 1 63 204 TBC1D2B,SH2D7,CIB2
SE_02_149500035 chr15:79965541-79990877 25336 35 12 730 66 5 19 118 BCL2A1,ST20-MTHFS,ST20-AS1,ST20
SE_02_149500241 chr15:89812670-89828287 15617 241 7 435 40 3 8 135 ANPEP,MESP2,MIR5094
SE_02_149500144 chr15:91938643-91948077 9434 144 11 331 5 0 19 0 SLCO3A1
SE_02_149500134 chr15:92801567-92820374 18807 134 9 598 19 0 22 0 ASB9P1
SE_02_149500044 chr15:99400391-99433392 33001 44 11 1155 63 6 49 0 MEF2A
SE_02_149500121 chr16:11349372-11371153 21781 121 10 894 102 8 36 138 RMI2,MIR548H2
SE_02_149500233 chr16:11612842-11641411 28569 233 9 966 67 3 4 0 SNN,LITAF,GSPT1,RSL1D1,TXNDC11,RMI2
SE_02_149500183 chr16:12529085-12548025 18940 183 7 1914 101 4 19 0 SNX29,MIR4718,CPPED1
SE_02_149500093 chr16:20897624-20912144 14520 93 5 327 28 0 74 458 LYRM1,DCUN1D3
SE_02_149500117 chr16:31869814-31878234 8420 117 4 188 3 0 0 212 ZNF267
SE_02_149500104 chr16:48601701-48624165 22464 104 6 538 26 1 42 208 N4BP1,SIAH1
SE_02_149500020 chr16:57338651-57360914 22263 20 10 625 75 1 20 190 CCL22,CX3CL1,CCL17,PLLP,COQ9,CIAPIN1,CCDC102A
SE_02_149500122 chr16:84597410-84614871 17461 122 8 707 25 5 13 0 COTL1,KLHL36
SE_02_149500188 chr16:85856371-85883222 26851 188 6 1005 29 3 11 0 MIR6774,IRF8
SE_02_149500235 chr17:1572275-1589960 17685 235 9 681 33 0 51 1028 SLC43A2,PITPNA
SE_02_149500072 chr17:2392906-2408030 15124 72 8 428 26 1 213 719 LOC284009,MNT
SE_02_149500085 chr17:43266813-43300922 34109 85 13 0 0 0 0 0 RNU2-1,LINC00854
SE_02_149500168 chr17:45224908-45230870 5962 168 6 172 12 0 47 106 FMNL1,MAP3K14-AS1,SPATA32,DCAKD,ACBD4,MAP3K14,HEXIM1,NMT1,PLCD3
SE_02_149500239 chr17:4722863-4736733 13870 239 7 448 59 2 32 601 CXCL16,MED11,PELP1,VMO1,TM4SF5,LOC101559451,ARRB2,ZMYND15
SE_02_149500213 chr17:59425991-59437675 11684 213 9 278 22 2 41 0 LINC01476,MIR4729
SE_02_149500180 chr17:59837305-59848815 11510 180 3 264 19 0 83 260 MIR21,VMP1,RPS6KB1,TUBD1
SE_02_149500139 chr17:68228441-68238316 9875 139 8 296 78 0 11 0 ARSG,LOC440461,AMZ2
SE_02_149500148 chr17:74511359-74524688 13329 148 7 462 55 2 13 558 CD300LB,CD300A,CD300C
SE_02_149500220 chr17:75295394-75326675 31281 220 6 898 114 8 71 642 GRB2,LOC100287042,MRPS7,MIF4GD,SLC25A19,GGA3,KIAA0195,NUP85,TSEN54
SE_02_149500038 chr17:78316038-78357428 41390 38 11 1295 12 1 195 130 SOCS3,LOC100996291,LOC101928674,PGS1
SE_02_149500119 chr17:7834247-7845262 11015 119 11 276 15 1 298 223 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,ALOX15B,WRAP53,TRAPPC1,ATP1B2,KCNAB3,TNFSF12-TNFSF13
SE_02_149500242 chr17:78772145-78780485 8340 242 7 235 13 0 14 0 CYTH1,USP36
SE_02_149500027 chr17:8910385-8935894 25509 27 12 694 23 0 24 159 PIK3R5,PIK3R6
SE_02_149500127 chr17:8953442-8968538 15096 127 7 424 21 1 50 140 PIK3R5
SE_02_149500216 chr17_KI270861v1_alt:2331-20517 18186 216 11 0 0 0 0 0 SLC43A2
SE_02_149500058 chr18:13562135-13586822 24687 58 10 799 30 1 54 0 LDLRAD4,MIR4526,RNMT
SE_02_149500206 chr18:74971625-74995533 23908 206 8 675 38 0 67 0 ZNF407,ZADH2
SE_02_149500143 chr18:77054365-77068807 14442 143 11 463 28 1 5 40 MBP
SE_02_149500076 chr19:12782624-12794296 11672 76 4 262 17 0 271 517 JUNB,MIR5684,BEST2,RTBDN,ASNA1,HOOK2,RNASEH2A,PRDX2,C19ORF43,MAST1,GCDH,TNPO2,DHPS,RAD23A,DNASE2,NFIX,WDR83OS,ZNF490,C19orf43,FBXW9,WDR83,GADD45GIP1,DAND5
SE_02_149500074 chr19:13838640-13862335 23695 74 14 643 44 1 174 0 NANOS3,C19ORF57,LOC284454,MIR23A,ZSWIM4,MIR27A,MIR24-2,MIR181D,MIR181C,CC2D1A
SE_02_149500109 chr19:2082240-2094389 12149 109 9 379 11 0 2 108 MOB3A,IZUMO4,MKNK2
SE_02_149500052 chr19:3552545-3570762 18217 52 11 647 43 2 1 236 MFSD12,HMG20B,TBXA2R,GIPC3,C19ORF71,FZR1,CACTIN-AS1
SE_02_149500224 chr19:35904555-35914989 10434 224 5 305 36 0 21 377 TYROBP,APLP1,KIRREL2,NFKBID,HCST,LRFN3,SYNE4,SDHAF1,LOC101927572,ALKBH6,NPHS1,POLR2I,IGFLR1,ARHGAP33,PSENEN
SE_02_149500218 chr19:44741583-44754260 12677 218 5 302 22 5 107 353 BCL3,MIR8085,CEACAM16,CBLC
SE_02_149500050 chr19:51122139-51139364 17225 50 6 567 26 2 27 849 SIGLEC9,KLK14,CTU1,SIGLEC7,LOC101928517,SIGLEC17P
SE_02_149500102 chr19:51421297-51443285 21988 102 11 618 46 0 0 0 LOC100129083,NKG7,LIM2,SIGLEC8,SIGLEC10,CEACAM18,C19ORF84
SE_02_149500003 chr19:51784088-51829956 45868 3 28 1251 149 7 0 368 FPR3,FPR2,FPR1,ZNF577,HAS1,ZNF432,ZNF350,ZNF649,ZNF613
SE_02_149500204 chr2:105864968-105875119 10151 204 7 321 9 1 22 0 NCK2
SE_02_149500171 chr2:108590012-108595930 5918 171 7 151 14 0 5 0 LIMS1,RANBP2
SE_02_149500189 chr2:111403203-111417043 13840 189 8 206 8 0 17 0 MIR4435-2HG
SE_02_149500016 chr2:111429746-111464807 35061 16 19 591 21 1 166 10 MIR4435-2HG
SE_02_149500086 chr2:112691368-112712983 21615 86 9 652 78 3 47 0 SLC20A1,FLJ42351
SE_02_149500028 chr2:113103160-113125165 22005 28 21 653 91 7 36 303 IL1RN,IL1F10,IL36RN,PSD4
SE_02_149500132 chr2:142865526-142875570 10044 132 11 247 12 0 5 0 KYNU
SE_02_149500217 chr2:144659480-144671696 12216 217 6 269 5 0 77 61 TEX41
SE_02_149500205 chr2:147628151-147637255 9104 205 7 219 9 2 33 0 ACVR2A
SE_02_149500253 chr2:160206231-160210646 4415 253 6 123 9 0 17 0 ITGB6
SE_02_149500039 chr2:191638220-191680281 42061 39 9 1168 82 3 77 318 NABP1,LOC105747689
SE_02_149500149 chr2:201118630-201127745 9115 149 6 195 16 1 21 94 CFLAR,CFLAR-AS1,FAM126B,NDUFB3
SE_02_149500089 chr2:203787515-203812597 25082 89 10 616 15 3 57 0 CTLA4
SE_02_149500079 chr2:205698350-205714984 16634 79 11 439 11 0 148 0 NRP2
SE_02_149500211 chr2:207142828-207164245 21417 211 7 573 33 2 151 0 KLF7,MIR2355,MIR7845
SE_02_149500077 chr2:216002209-216012295 10086 77 9 289 29 1 25 0 MREG,XRCC5,TMEM169
SE_02_149500160 chr2:218731880-218746116 14236 160 8 357 48 0 48 613 TTLL4,CYP27A1
SE_02_149500151 chr2:231161625-231182733 21108 151 7 521 46 1 44 234 PSMD1,ARMC9,HTR2B
SE_02_149500057 chr2:42096977-42133097 36120 57 12 1222 89 3 98 0 PKDCC,EML4,LOC102723824
SE_02_149500207 chr2:57429594-57445173 15579 207 11 502 0 2 7 0 VRK2
SE_02_149500186 chr2:60514876-60529971 15095 186 8 401 10 1 109 439 BCL11A
SE_02_149500245 chr2:68732420-68743547 11127 245 6 298 19 0 37 90 ARHGAP25,ANTXR1
SE_02_149500007 chr2:87485354-87540674 55320 7 31 1056 49 0 229 80 LINC00152
SE_02_149500082 chr20:10469809-10492923 23114 82 10 633 74 1 85 0 SLX4IP,MKKS
SE_02_149500067 chr20:19934094-19947852 13758 67 9 403 14 4 80 68 RIN2
SE_02_149500227 chr20:25308638-25325584 16946 227 7 469 50 2 52 412 ABHD12,PYGB,GINS1
SE_02_149500100 chr20:50496734-50514308 17574 100 7 425 29 1 41 140 PTPN1
SE_02_149500159 chr20:5065153-5090245 25092 159 10 739 128 0 30 161 CDS2,PCNA-AS1,PCNA,TMEM230,RASSF2
SE_02_149500026 chr20:53578511-53595957 17446 26 8 430 5 1 98 456 ZNF217,LOC101927770
SE_02_149500055 chr20:53906675-53939959 33284 55 12 888 16 5 37 0 SUMO1P1
SE_02_149500120 chr20:56418717-56443243 24526 120 7 642 33 6 29 152 CASS4,CSTF1,AURKA,RTFDC1
SE_02_149500099 chr21:33361793-33384176 22383 99 12 602 47 2 4 0 IFNAR1,IFNGR2
SE_02_149500222 chr21:43767978-43778825 10847 222 7 426 42 0 5 392 CSTB,PDXK,RRP1,AATBC
SE_02_149500064 chr21:44133739-44185644 51905 64 15 1805 133 1 26 713 C21ORF33,ICOSLG,C21orf2,C21orf33,PWP2,LRRC3
SE_02_149500049 chr21:5076591-5122448 45857 49 19 13 8 0 0 0 C21ORF33,PWP2
SE_02_149500209 chr22:17237255-17245688 8433 209 7 300 9 1 0 0 CECR1,CECR3
SE_02_149500087 chr22:17767414-17782464 15050 87 9 489 18 4 5 395 LINC00528,BID,MIR3198-1
SE_02_149500115 chr22:30305856-30325082 19226 115 7 422 35 0 101 0 TBC1D10A,OSM,CCDC157,GATSL3,SF3A1
SE_02_149500174 chr22:38205373-38219045 13672 174 10 351 25 1 76 637 MAFF,PLA2G6
SE_02_149500131 chr22:39255163-39277330 22167 131 7 723 77 4 33 0 RNU86,RPL3,SNORD83B,PDGFB,SNORD43,SNORD83A
SE_02_149500226 chr3:10189278-10205338 16060 226 9 500 41 0 14 88 IRAK2,TATDN2,VHL
SE_02_149500024 chr3:105351231-105369647 18416 24 9 464 31 0 108 264 ALCAM
SE_02_149500069 chr3:11274284-11290704 16420 69 9 419 22 1 1 0 ATG7,HRH1
SE_02_149500022 chr3:119554840-119589682 34842 22 14 1063 182 10 62 889 ADPRH,CD80,PLA1A,TIMMDC1
SE_02_149500247 chr3:119626679-119639502 12823 247 6 388 53 1 35 173 PLA1A,ADPRH,COX17,POPDC2
SE_02_149500251 chr3:120641378-120649803 8425 251 7 228 20 3 56 241 HGD,NDUFB4
SE_02_149500029 chr3:127749825-127776846 27021 29 14 875 58 8 28 0 MGLL
SE_02_149500106 chr3:12999099-13016217 17118 106 9 466 25 5 51 0 IQSEC1
SE_02_149500173 chr3:14424592-14435061 10469 173 9 325 19 1 43 0 SLC6A6
SE_02_149500153 chr3:16360533-16378857 18324 153 5 582 69 2 57 188 RFTN1,OXNAD1
SE_02_149500126 chr3:16508929-16523363 14434 126 6 393 49 0 52 173 RFTN1,LINC00690
SE_02_149500036 chr3:172130149-172153148 22999 36 18 588 3 3 75 33 FNDC3B
SE_02_149500210 chr3:177589334-177600175 10841 210 9 288 14 2 10 0 LINC00578
SE_02_149500203 chr3:183144914-183160041 15127 203 8 445 56 9 16 208 LAMP3,MCCC1
SE_02_149500095 chr3:187738474-187745362 6888 95 5 467 10 3 114 11 BCL6,RTP2,LOC100131635
SE_02_149500043 chr3:188270212-188299775 29563 43 14 843 41 10 170 0 LPP
SE_02_149500061 chr3:188384942-188401595 16653 61 12 467 4 9 63 0 LPP
SE_02_149500136 chr3:188421548-188439939 18391 136 10 460 0 1 7 0 LPP,LPP-AS1
SE_02_149500243 chr3:32484724-32501066 16342 243 5 412 30 4 8 59 CMTM6,MIR548AY
SE_02_149500096 chr3:4976725-4987291 10566 96 6 285 9 3 248 671 BHLHE40-AS1,BHLHE40
SE_02_149500030 chr3:5124546-5145972 21426 30 16 684 46 0 6 0 ARL8B,EDEM1
SE_02_149500192 chr3:69082244-69095611 13367 192 5 309 17 1 50 124 ARL6IP5,TMF1,UBA3,MIR3136,LMOD3,EOGT
SE_02_149500114 chr4:158796487-158823074 26587 114 12 569 25 1 52 0 FNIP2,ETFDH,PPID
SE_02_149500046 chr4:168711508-168741719 30211 46 12 865 29 4 92 75 PALLD
SE_02_149500236 chr4:184848927-184860808 11881 236 7 417 40 0 15 177 MIR3945,ACSL1,SLED1,LINC01093,LOC731424
SE_02_149500234 chr4:3384948-3389503 4555 234 5 147 13 0 16 224 RGS12
SE_02_149500071 chr4:38071653-38084511 12858 71 15 340 23 2 9 0 TBC1D1
SE_02_149500010 chr4:49709098-49712007 2909 10 2 0 0 0 0 0 CWH43,OCIAD2
SE_02_149500018 chr4:81490317-81513793 23476 18 16 597 14 5 86 0 RASGEF1B
SE_02_149500097 chr5:132414904-132440412 25508 97 9 612 66 9 55 107 C5ORF56,SLC22A5,LOC553103,MIR3936
SE_02_149500032 chr5:139649570-139671503 21933 32 15 489 18 0 341 0 CXXC5
SE_02_149500008 chr5:151056155-151096918 40763 8 14 1230 144 16 165 890 TNIP1,GPX3,ANXA6
SE_02_149500034 chr5:172773783-172807821 34038 34 13 1080 46 3 82 0 DUSP1,LOC101928093,ERGIC1
SE_02_149500059 chr5:172869416-172887889 18473 59 10 519 15 1 22 507 ERGIC1
SE_02_149500037 chr5:180812482-180829110 16628 37 10 512 64 0 5 79 HEIH,ZFP62,MGAT1,LINC00847,OR2Y1
SE_02_149500124 chr5:36678983-36690434 11451 124 8 331 24 1 74 489 SLC1A3
SE_02_149500163 chr5:392881-424747 31866 163 10 1139 187 3 49 424 AHRR,EXOC3-AS1,PP7080,EXOC3,LOC100288152
SE_02_149500252 chr5:40485660-40492082 6422 252 7 150 10 4 21 0 PTGER4
SE_02_149500212 chr5:68419314-68435695 16381 212 7 418 6 1 61 0 PIK3R1
SE_02_149500066 chr5:72465186-72477525 12339 66 13 321 17 4 25 0 ZNF366
SE_02_149500075 chr5:72503167-72520073 16906 75 5 496 38 4 94 65 ZNF366,LOC102503427,MRPS27
SE_02_149500080 chr5:78526004-78541769 15765 80 11 418 23 0 55 0 LHFPL2,SCAMP1
SE_02_149500068 chr6:113630109-113647122 17013 68 14 425 19 1 59 0 LOC101927686
SE_02_149500249 chr6:113854691-113860037 5346 249 2 114 4 0 143 308 MARCKS,FLJ34503,LINC01268
SE_02_149500237 chr6:129672169-129687785 15616 237 8 427 14 2 46 0 ARHGAP18
SE_02_149500065 chr6:134372435-134400053 27618 65 11 701 5 1 47 0 LINC01010
SE_02_149500123 chr6:134718186-134733774 15588 123 9 435 20 0 45 0 LOC101928304
SE_02_149500230 chr6:137224396-137237884 13488 230 8 400 1 1 27 0 IFNGR1
SE_02_149500156 chr6:137869766-137875161 5395 156 4 114 5 4 0 138 TNFAIP3,LOC100130476
SE_02_149500098 chr6:137891924-137911659 19735 98 7 507 22 2 0 0 LOC100130476,TNFAIP3
SE_02_149500009 chr6:14091220-14124734 33514 9 18 973 81 1 106 272 CD83
SE_02_149500178 chr6:159690596-159702559 11963 178 3 296 41 2 24 423 SOD2,WTAP
SE_02_149500054 chr6:16683498-16713904 30406 54 15 839 13 11 63 0 ATXN1
SE_02_149500091 chr6:18388584-18415086 26502 91 9 724 82 2 57 65 RNF144B
SE_02_149500101 chr6:2846630-2859197 12567 101 7 429 40 0 3 245 MIR4645,SERPINB9P1,SERPINB9,SERPINB1,LOC101927730
SE_02_149500130 chr6:71332421-71347633 15212 130 7 364 52 0 56 0 OGFRL1,MIR30C2
SE_02_149500182 chr7:128933466-128940523 7057 182 5 201 32 7 35 260 IRF5,KCP
SE_02_149500175 chr7:151791980-151806852 14872 175 9 552 23 0 19 39 PRKAG2
SE_02_149500111 chr7:30168316-30186132 17816 111 10 493 52 5 48 0 MTURN
SE_02_149500162 chr7:36736298-36750354 14056 162 9 385 30 6 19 0 AOAH
SE_02_149500083 chr7:55531718-55547322 15604 83 9 441 54 1 6 132 VOPP1
SE_02_149500140 chr8:11877304-11897975 20671 140 5 845 106 5 0 0 CTSB,FDFT1
SE_02_149500179 chr8:130276361-130284532 8171 179 9 236 12 3 16 0 ASAP1,ASAP1-IT1
SE_02_149500197 chr8:130437965-130447362 9397 197 4 235 27 2 53 164 ASAP1
SE_02_149500047 chr8:18837344-18854948 17604 47 11 723 32 2 41 0 PSD3
SE_02_149500103 chr8:37880616-37904118 23502 103 11 498 9 0 91 231 RAB11FIP1,BRF2,GOT1L1
SE_02_149500107 chr8:55972517-55991999 19482 107 10 544 45 1 15 0 LYN,SNORD54,RPS20
SE_02_149500202 chr8:71830070-71842466 12396 202 6 370 26 2 7 208 MSC,MSC-AS1
SE_02_149500194 chr8:8917574-8936501 18927 194 6 810 77 1 50 0 MFHAS1,ERI1
SE_02_149500172 chr8:89833822-89845704 11882 172 9 289 23 0 10 0 OSGIN2
SE_02_149500228 chr8:95067366-95088630 21264 228 6 561 74 2 0 492 MIR3150A,MIR3150B,PLEKHF2,NDUFAF6
SE_02_149500190 chr8:96853473-96862126 8653 190 10 224 10 2 17 0 CPQ
SE_02_149500240 chr8:96909293-96926301 17008 240 6 426 8 0 74 0 CPQ
SE_02_149500199 chr8:96978029-96989882 11853 199 4 249 4 0 11 0 LOC101927066,CPQ,TSPYL5
SE_02_149500013 chr9:120920001-120936518 16517 13 14 386 60 8 27 447 TRAF1,PHF19,PSMD5
SE_02_149500084 chr9:125631787-125653382 21595 84 10 475 21 0 160 106 MAPKAP1
SE_02_149500201 chr9:127832453-127838790 6337 201 9 181 11 1 0 41 ENG,FPGS,MIR4672,MIR3960,CDK9,MIR2861,AK1
SE_02_149500004 chr9:131621080-131679047 57967 4 34 1543 135 17 127 905 RAPGEF1,UCK1,POMT1,PRRC2B
SE_02_149500063 chr9:131726804-131735581 8777 63 9 242 25 2 34 0 RAPGEF1
SE_02_149500232 chr9:15296904-15305530 8626 232 8 295 23 2 3 0 TTC39B
SE_02_149500161 chr9:77935572-77954843 19271 161 6 512 30 3 43 0 GNAQ
SE_02_149500165 chr9:87554607-87565916 11309 165 9 391 99 13 5 0 DAPK1
SE_02_149500176 chr9:99430544-99446684 16140 176 5 432 13 0 58 0 NAMA
SE_02_149500231 chr9:99510263-99516685 6422 231 5 161 18 0 43 0 NAMA
SE_02_149500166 chr9:99590099-99596782 6683 166 6 148 1 0 16 47 LOC101928438,NAMA
SE_02_149500021 chrUn_KI270333v1:0-2699 2699 21 1 0 0 0 0 0
SE_02_149500094 chrUn_KI270337v1:17-1115 1098 94 1 0 0 0 0 0
SE_02_149500023 chrUn_KI270466v1:0-1233 1233 23 1 0 0 0 0 0
SE_02_149500001 chrUn_KI270467v1:799-3920 3121 1 3 0 0 0 0 0
SE_02_149500125 chrX:13078828-13092530 13702 125 11 234 11 0 23 0 FAM9C,TLR8

SE annotation visualization


Information description of sample and annotation

Case ID: Name:GSM2081239
Input ID: Name:GSM2081245
Common SNP: dbSNP
eQTL: GTEx, HaploReg v4.1, PancanQTL
Risk SNP : GWAS Catalog, GWASdb v2.0
TFBS: TFBS Conserved of UCSC
CRISPR/Cas9 target site: CRISPR Targets of UCSC

Software and parameters used

Read Mapping: bowtie(v2.4.4) -p 10 -x -S -U
Peak Calling: macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb