SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000177854
Gene: TMEM187 Gene type: protein_coding
Strand: + External links:
Genomic region: chrX:153972754-153983194 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_00_002700715 chrX:153965422-153986345 Sample_00_0027 Blood natural-killer-cell 715 4 437 32 3 118 812 HCFC1,MIR3202-1,TMEM187,MIR3202-2,MIR718,ARHGAP4,NAA10,RENBP,IRAK1
SE_00_003900226 chrX:153965451-153986382 Sample_00_0039 Spleen spleen_3y 226 4 437 32 3 118 812 HCFC1,MIR3202-1,TMEM187,MIR3202-2,MIR718,ARHGAP4,NAA10,RENBP,IRAK1
SE_00_004400580 chrX:153965560-153986530 Sample_00_0044 Cord blood T-cell 580 3 435 31 3 118 812 HCFC1,MIR3202-1,TMEM187,MIR3202-2,MIR718,ARHGAP4,NAA10,RENBP,IRAK1
SE_00_000800426 chrX:153965772-153986635 Sample_00_0008 Blood CD4-positive-alpha-beta-memory-T-cell 426 2 432 31 3 118 812 HCFC1,MIR3202-1,TMEM187,MIR3202-2,MIR718,ARHGAP4,NAA10,RENBP,IRAK1
SE_02_013100888 chrX:153965970-153986364 Sample_02_0131 Lung 1015_PT 888 3 421 30 3 118 812 HCFC1,MIR3202-1,TMEM187,MIR3202-2,MIR718,ARHGAP4,NAA10,RENBP,IRAK1
SE_00_003401093 chrX:153965983-153986081 Sample_00_0034 Right cardiac atrium right-cardiac-atrium 1093 3 415 30 3 118 812 HCFC1,MIR3202-1,TMEM187,MIR3202-2,MIR718,ARHGAP4,NAA10,RENBP,IRAK1
SE_00_002500493 chrX:153966108-153986164 Sample_00_0025 Muscle of leg muscle-of-leg 493 4 416 30 3 118 812 HCFC1,MIR3202-1,TMEM187,MIR3202-2,MIR718,ARHGAP4,NAA10,RENBP,IRAK1
SE_02_001900112 chrX:153966212-153987324 Sample_02_0019 Embryo Neural crest cells 112 5 439 32 3 118 812 HCFC1,MIR3202-1,TMEM187,MIR3202-2,MIR718,ARHGAP4,NAA10,RENBP,IRAK1
SE_00_002200572 chrX:153966274-153986104 Sample_00_0022 Lung lung_30y 572 6 414 30 3 118 812 HCFC1,MIR3202-1,TMEM187,MIR3202-2,MIR718,ARHGAP4,NAA10,RENBP,IRAK1
SE_00_004000162 chrX:153966391-153986128 Sample_00_0040 Spleen spleen_30y 162 4 409 29 3 116 812 HCFC1,MIR3202-1,TMEM187,MIR3202-2,MIR718,ARHGAP4,NAA10,RENBP,IRAK1
SE_00_003500525 chrX:153966633-153986212 Sample_00_0035 Sigmoid colon sigmoid-colon 525 6 407 29 3 116 812 HCFC1,MIR3202-1,TMEM187,MIR3202-2,MIR718,ARHGAP4,NAA10,RENBP,IRAK1
SE_00_000600411 chrX:153966702-153986336 Sample_00_0006 Blood CD14-positive-monocyte 411 2 411 29 3 116 812 HCFC1,MIR3202-1,TMEM187,MIR3202-2,MIR718,ARHGAP4,NAA10,RENBP,IRAK1
SE_00_004200353 chrX:153966934-153986134 Sample_00_0042 Stomach stomach_30y 353 4 402 29 3 116 812 HCFC1,MIR3202-1,TMEM187,MIR3202-2,MIR718,ARHGAP4,NAA10,RENBP,IRAK1
SE_00_001100812 chrX:153967050-153986170 Sample_00_0011 Esophagus esophagus 812 4 400 29 3 116 812 HCFC1,MIR3202-1,TMEM187,MIR3202-2,MIR718,ARHGAP4,NAA10,RENBP,IRAK1
SE_00_001000421 chrX:153967760-153982156 Sample_00_0010 Embryo endodermal-cell 421 3 297 20 2 113 607 HCFC1,MIR3202-1,TMEM187,MIR3202-2,MIR718,ARHGAP4,NAA10,RENBP,IRAK1
SE_02_033300334 chrX:153968338-153975784 Sample_02_0333 Haematopoietic and lymphoid tissue MOLM14_DMSO_10 334 1 147 5 1 110 452 HCFC1,TMEM187,MIR718,ARHGAP4,MIR3202-1,NAA10,RENBP,MIR3202-2,IRAK1
SE_02_009500547 chrX:153968862-153975207 Sample_02_0095 Mammary gland MDA-MB-468 547 1 118 5 1 101 452 HCFC1,TMEM187,MIR718,ARHGAP4,MIR3202-1,NAA10,RENBP,MIR3202-2,IRAK1
SE_02_024200615 chrX:153969036-153975203 Sample_02_0242 Colon V481 615 1 114 3 1 95 452 HCFC1,TMEM187,MIR718,ARHGAP4,MIR3202-1,NAA10,RENBP,MIR3202-2,IRAK1
SE_02_024600145 chrX:153969055-153975230 Sample_02_0246 Mammary gland MCF-7_estradiol 145 1 115 3 1 94 452 HCFC1,TMEM187,MIR718,ARHGAP4,MIR3202-1,NAA10,RENBP,MIR3202-2,IRAK1
SE_02_033000163 chrX:153969145-153974932 Sample_02_0330 Endoderm MHG 163 1 104 3 1 94 452 HCFC1,TMEM187,MIR718,ARHGAP4,MIR3202-1,NAA10,RENBP,MIR3202-2,IRAK1
SE_02_035800579 chrX:153969169-153975074 Sample_02_0358 Colon LS180 579 1 108 3 1 94 452 HCFC1,TMEM187,MIR718,ARHGAP4,MIR3202-1,NAA10,RENBP,MIR3202-2,IRAK1
SE_02_035300713 chrX:153969175-153975143 Sample_02_0353 Colon HT29 713 2 111 3 1 94 452 HCFC1,TMEM187,MIR718,ARHGAP4,MIR3202-1,NAA10,RENBP,MIR3202-2,IRAK1
SE_01_003701208 chrX:153969386-153974602 Sample_01_0037 Liver hepatocyte 1208 1 94 2 1 94 452 HCFC1,TMEM187,MIR718,ARHGAP4,MIR3202-1,NAA10,RENBP,MIR3202-2,IRAK1
SE_02_023700834 chrX:153969655-153975088 Sample_02_0237 Colon V389 834 1 100 2 1 93 452 HCFC1,TMEM187,MIR718,ARHGAP4,MIR3202-1,NAA10,RENBP,MIR3202-2,IRAK1
SE_02_109600690 chrX:153969681-153974751 Sample_02_1096 Blood CD34 Erythroid cells_Don003 690 1 94 2 1 93 452 HCFC1,TMEM187,HCFC1-AS1,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,MIR3202-2,RENBP
SE_02_081900981 chrX:153969723-153975037 Sample_02_0819 Ovary Mucinous ovarian cancer 981 1 96 2 1 93 452 HCFC1,TMEM187,HCFC1-AS1,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,MIR3202-2,RENBP
SE_02_136300438 chrX:153969848-153974832 Sample_02_1363 Blood Hudep2 438 1 92 2 1 93 452 HCFC1,TMEM187,HCFC1-AS1,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,MIR3202-2,RENBP
SE_02_067300618 chrX:153969945-153974013 Sample_02_0673 Prostate LNCAP_FA 618 1 71 1 0 91 452 HCFC1,TMEM187,HCFC1-AS1,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,MIR3202-2,RENBP
SE_02_041800074 chrX:153969968-153974314 Sample_02_0418 Embryo H9_Null+EZH2 74 1 77 1 1 91 452 HCFC1,TMEM187,MIR718,ARHGAP4,MIR3202-1,NAA10,RENBP,MIR3202-2,IRAK1
SE_02_144800404 chrX:153970114-153973894 Sample_02_1448 Adipose SW872_YAP5SA 404 1 63 1 0 90 452 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_02_142800906 chrX:153970135-153973967 Sample_02_1428 Shoulder fibroblast_316 906 1 65 1 0 91 452 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_02_012400955 chrX:153970162-153974047 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 955 1 65 1 0 91 452 HCFC1,TMEM187,MIR718,ARHGAP4,MIR3202-1,NAA10,RENBP,MIR3202-2,IRAK1
SE_02_094500457 chrX:153970214-153973747 Sample_02_0945 Brain SF767 457 1 61 1 0 89 452 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_02_130900706 chrX:153970228-153973717 Sample_02_1309 Artery Pulmonary artery endothelial cells_Control 706 1 60 1 0 84 452 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_02_004200416 chrX:153970284-153974625 Sample_02_0042 Embryo endodermal CyT49_ES_D0 416 1 75 2 1 81 452 HCFC1,TMEM187,MIR718,ARHGAP4,MIR3202-1,NAA10,RENBP,MIR3202-2,IRAK1
SE_00_001600096 chrX:153970399-153973781 Sample_00_0016 Foreskin iPS-DF-19.11 101 1 59 1 0 78 452 HCFC1,TMEM187,MIR718,ARHGAP4,MIR3202-1,NAA10,RENBP,MIR3202-2,IRAK1
SE_01_003300382 chrX:153970411-153973679 Sample_01_0033 Embryo H9 382 1 57 1 0 78 452 HCFC1,TMEM187,MIR718,ARHGAP4,MIR3202-1,NAA10,RENBP,MIR3202-2,IRAK1
SE_02_085600470 chrX:153970426-153974069 Sample_02_0856 Glioblastoma Glioblastoma neurosphere cell_HF-3016 470 1 63 1 0 79 452 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_02_093500494 chrX:153970432-153973783 Sample_02_0935 Retinal Pigmented Epithelial RPE188_Con 494 1 57 1 0 78 452 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_02_147000523 chrX:153970458-153974052 Sample_02_1470 Umbilical Vein H441 523 1 57 1 0 79 448 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_02_024100474 chrX:153970463-153974883 Sample_02_0241 Colon V456 474 1 75 2 1 81 446 HCFC1,TMEM187,MIR718,ARHGAP4,MIR3202-1,NAA10,RENBP,MIR3202-2,IRAK1
SE_01_010101400 chrX:153970475-153974974 Sample_01_0101 Pancreas pancreas_54y 1400 1 76 2 1 81 442 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_02_074400037 chrX:153970489-153974100 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 37 1 57 1 0 79 438 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_02_074800675 chrX:153970492-153974832 Sample_02_0748 Mammary gland HCC1599_WO 675 1 74 2 1 81 438 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_02_046100511 chrX:153970492-153975268 Sample_02_0461 Blood MV-4-11-B cells 511 1 83 2 1 81 438 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_02_138000538 chrX:153970493-153973547 Sample_02_1380 Pancreas Pancreatic_tumor_associated_fibroblasts_CW1_untreated 538 1 48 1 0 78 437 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_02_136600302 chrX:153970494-153973781 Sample_02_1366 Pancreas BxPC3-untreated 302 1 52 1 0 78 436 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_02_004800611 chrX:153970494-153974190 Sample_02_0048 Embryo endodermal CyT49_HE 611 1 60 1 1 79 436 HCFC1,TMEM187,MIR718,ARHGAP4,MIR3202-1,NAA10,RENBP,MIR3202-2,IRAK1
SE_02_068800078 chrX:153970494-153974826 Sample_02_0688 Lung NCI-H211_no infection 78 2 74 2 1 81 436 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_02_079300373 chrX:153970496-153973620 Sample_02_0793 Brain MES20 373 1 49 1 0 78 436 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_01_011200063 chrX:153970498-153974167 Sample_01_0112 Embryonic kidney HEK293_encode 63 1 58 1 1 79 436 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_02_097400223 chrX:153970501-153973730 Sample_02_0974 Brain H3.3K27M-KO_DIPGXIII-C14-nKO-Rx_PARENTAL_cells 223 1 51 1 0 78 434 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_02_093400204 chrX:153970501-153973906 Sample_02_0934 Embryo H7-WT 204 1 54 1 0 78 434 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_02_138300318 chrX:153970501-153974677 Sample_02_1383 Pancreas Pancreatic cancer cells_THZ1 318 1 67 2 1 81 434 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_02_092900921 chrX:153970511-153974686 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 921 2 67 2 1 81 431 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_02_137200274 chrX:153970512-153973934 Sample_02_1372 Pancreas PSN1-untreated 274 1 54 1 0 78 431 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_02_140400076 chrX:153970514-153974214 Sample_02_1404 Embryonic kidney HEK293_siBAHD1_WT 76 1 59 1 1 79 431 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_02_137100617 chrX:153970522-153974107 Sample_02_1371 Pancreas Patu899S-untreated 617 1 56 1 0 79 428 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_02_125400817 chrX:153970523-153973912 Sample_02_1254 Bladder Bladder tumor Basal1 817 1 54 1 0 78 427 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_02_068701347 chrX:153970523-153976066 Sample_02_0687 Lung NCI-H146_no infection 1347 2 91 3 1 81 427 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_02_109400032 chrX:153970525-153973647 Sample_02_1094 Embryo H9_0Dox 32 1 47 1 0 78 426 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_02_103500775 chrX:153970525-153973780 Sample_02_1035 Mammary gland HCC70_Vehicle 775 1 50 1 0 78 426 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_02_136500563 chrX:153970525-153974649 Sample_02_1365 Pancreas AsPC1-untreated 563 1 66 2 1 81 426 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_02_081600852 chrX:153970528-153974911 Sample_02_0816 Ovary Clear cell ovarian cancer 852 1 72 2 1 81 425 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_02_068500261 chrX:153970537-153973819 Sample_02_0685 Lung NCI-H1048_no infection 261 1 50 1 0 78 421 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_02_081700863 chrX:153970553-153975166 Sample_02_0817 Ovary Epithelial ovarian cancer 863 1 79 2 1 81 417 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_02_106900401 chrX:153970561-153975163 Sample_02_1069 Bone marrow Bone marrow aspirate 401 1 79 2 1 81 415 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_02_143200336 chrX:153970565-153974555 Sample_02_1432 Bone A673 STAG2 WT 336 1 63 2 1 81 414 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_00_004900764 chrX:153970596-153974873 Sample_00_0049 Small intestine small intestine 30y 764 1 71 2 1 81 404 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_02_000600140 chrX:153994570-153994796 Sample_02_0006 Cervical cervical-cancer_parental 140 1 17 0 0 0 0 MIR718,HCFC1,MIR3202-2,TMEM187,MIR3202-1,RENBP,IRAK1
Genomic distribution of SEs associated with TMEM187
Genome Browser

The strength of the tissue affected by the gene

Expression of TMEM187

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)