SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_074800675
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: HCC1599_WO
Genomic region: chrX:153970492-153974832
Size: 4340
Super-enhancer rank 675
Number of SE elements: 1
ChIP density(Case|Control): 42703.864|581.994
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: TMEM187 ;
ROSE Overlap HCFC1 ; TMEM187 ;
ROSE Proximal MIR3202-1 ; NAA10 ; IRAK1 ; ARHGAP4 ; MIR718 ; HCFC1-AS1 ; MIR3202-2 ; RENBP ;
ROSE Closest TMEM187 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA AVPR2 ; IRAK1 ; L1CAM ; ARHGAP4 ; RENBP ; LCA10 ; MIR718 ; NAA10 ; TMEM187 ; HCFC1 ; MIR3202-2 ; MIR3202-1 ; HCFC1-AS1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_074800675 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers