Sample overview


Search result

SE ID SE Region Size Rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_140400127 chr1:112954139-112959277 5138 127 1 129 10 0 40 534 SLC16A1,SLC16A1-AS1,AKR7A2P1
SE_02_140400191 chr1:144546422-144568720 22298 191 6 2 54 0 0 0 SRGAP2-AS1,NBPF15
SE_02_140400239 chr1:146369142-146387604 18462 239 4 0 61 0 0 0 RNVU1-18,NUDT4P1
SE_02_140400105 chr1:150561058-150580582 19524 105 5 516 52 4 85 725 MCL1,ADAMTSL4-AS1,ADAMTSL4,ENSA,FALEC,MIR4257
SE_02_140400233 chr1:150971334-150979538 8204 233 3 180 28 2 29 257 CERS2,SETDB1,ANXA9,PRUNE,FAM63A
SE_02_140400139 chr1:154218684-154222255 3571 139 1 88 8 1 109 432 C1ORF43,UBAP2L,TPM3,C1ORF189,MIR190B
SE_02_140400162 chr1:154999096-155017685 18589 162 4 395 19 1 614 1431 ZBTB7B,CKS1B,PBXIP1,SHC1,DCST2,PYGO2,LENEP,ADAM15,EFNA4,LOC100505666,MIR4258,FLAD1,DCST1
SE_02_140400247 chr1:156498836-156506046 7210 247 4 177 10 1 110 240 MEF2D
SE_02_140400066 chr1:156746131-156752599 6468 66 1 161 11 0 67 385 HDGF,CRABP2,RRNAD1,ISG20L2,PRCC,MRPL24
SE_02_140400039 chr1:15831045-15853475 22430 39 8 607 66 4 86 732 FLJ37453,SPEN,UQCRHL
SE_02_140400049 chr1:161440062-161471066 31004 49 6 165 18 0 0 2545 FCGR2A
SE_02_140400093 chr1:16895505-16914801 19296 93 4 725 83 0 2 64 RNVU1-18,CROCC
SE_02_140400171 chr1:224182116-224185706 3590 171 1 92 4 0 11 165 DEGS1,LOC101927164,LOC101927143
SE_02_140400060 chr1:225650382-225657749 7367 60 2 170 5 0 69 270 ENAH
SE_02_140400084 chr1:226100220-226133881 33661 84 7 813 65 2 18 0 H3F3A,H3F3AP4
SE_02_140400087 chr1:227315172-227319239 4067 87 1 122 24 0 46 213 CDC42BPA
SE_02_140400116 chr1:228645634-228649263 3629 116 1 145 13 0 0 0 DUSP5P1,RHOU,MIR7641-2,RNA5S1,RNA5S2,RNA5S3,RNA5S4,RNA5S5,RNA5S6,RNA5S9,RNA5S10,RNA5S15
SE_02_140400182 chr1:231335013-231340439 5426 182 2 123 2 0 66 612 SPRTN,EXOC8
SE_02_140400178 chr1:231418707-231423184 4477 178 3 122 10 0 15 557 EGLN1
SE_02_140400146 chr1:23342361-23347436 5075 146 2 130 6 0 66 146 HNRNPR,ZNF436-AS1,ZNF436
SE_02_140400018 chr1:234599370-234619462 20092 18 4 565 40 2 0 780 IRF2BP2,LOC101927787,LINC00184
SE_02_140400019 chr1:244860852-244881869 21017 19 4 579 14 1 105 407 HNRNPU,COX20,HNRNPU-AS1
SE_02_140400061 chr1:26691816-26698672 6856 61 4 135 10 1 309 600 ARID1A
SE_02_140400037 chr1:28504567-28510658 6091 37 1 225 19 0 0 397 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_140400092 chr1:31063106-31071316 8210 92 3 204 12 1 26 155 PUM1
SE_02_140400123 chr1:31925300-31955444 30144 123 5 812 31 2 0 226 PTP4A2
SE_02_140400172 chr1:32649114-32652599 3485 172 1 79 8 0 31 296 RBBP4,ZBTB8OS
SE_02_140400059 chr1:46300849-46308504 7655 59 3 164 10 0 77 218 UQCRH,LRRC41,NSUN4
SE_02_140400047 chr1:50967753-50980703 12950 47 5 278 11 1 171 656 CDKN2C,FAF1
SE_02_140400242 chr1:61079612-61084423 4811 242 2 97 0 0 85 294 NFIA
SE_02_140400102 chr1:62436479-62439833 3354 102 1 111 7 5 31 274 USP1
SE_02_140400113 chr1:6600417-6616014 15597 113 5 444 18 1 155 550 PHF13,KLHL21,THAP3,NOL9,ZBTB48,TAS1R1
SE_02_140400058 chr1:67428323-67441807 13484 58 2 392 11 1 81 171 SERBP1
SE_02_140400153 chr1:77676162-77688085 11923 153 3 244 18 0 34 218 ZZZ3
SE_02_140400080 chr1:77976603-77980508 3905 80 1 117 7 0 0 119 FUBP1,DNAJB4
SE_02_140400115 chr1:8873515-8880658 7143 115 5 200 4 0 16 387 ENO1,ENO1-AS1,MIR6728
SE_02_140400124 chr1:935224-945830 10606 124 5 557 31 1 0 1614 SAMD11,NOC2L,PLEKHN1,PERM1,KLHL17,LOC100130417
SE_02_140400038 chr1:996233-1002433 6200 38 2 232 19 0 3 449 HES4,PLEKHN1,NOC2L,PERM1,AGRN,ISG15,KLHL17
SE_02_140400216 chr1_GL383519v1_alt:45921-82992 37071 216 10 0 0 0 0 0 GBA,HCN3,CLK2,SCAMP3,FAM189B
SE_02_140400208 chr1_KI270713v1_random:20943-22642 1699 208 2 0 0 0 0 0 RNU1-1
SE_02_140400199 chr1_KI270765v1_alt:57720-79797 22077 199 6 0 0 0 0 0
SE_02_140400184 chr10:100996489-101027398 30909 184 6 936 73 14 330 3954 PDZD7,LZTS2,SEMA4G,SFXN3,MIR608,KAZALD1,C10ORF2,MRPL43
SE_02_140400096 chr10:101059867-101067996 8129 96 2 232 6 0 78 1212 KAZALD1,SFXN3,PDZD7
SE_02_140400204 chr10:101815291-101831531 16240 204 4 374 26 0 88 1439 KCNIP2,MGEA5,KCNIP2-AS1,FGF8,NPM3
SE_02_140400071 chr10:102627570-102651213 23643 71 6 548 54 2 271 960 SUFU,TRIM8
SE_02_140400100 chr10:112950316-112958173 7857 100 4 195 9 0 175 364 TCF7L2
SE_02_140400114 chr10:125157966-125162871 4905 114 1 82 2 0 140 427 CTBP2
SE_02_140400078 chr10:132387399-132453863 66464 78 8 2368 145 3 157 1348 C10ORF91,PWWP2B
SE_02_140400118 chr10:21516472-21529376 12904 118 4 228 4 0 339 722 SKIDA1,MLLT10,CASC10,MIR1915
SE_02_140400085 chr10:43399272-43421289 22017 85 3 643 74 0 36 346 HNRNPF,ZNF487,FXYD4
SE_02_140400148 chr10:68327996-68334046 6050 148 3 152 14 0 29 240 PBLD,HNRNPH3
SE_02_140400181 chr10:72243792-72273748 29956 181 8 804 90 0 131 3 DDIT4,ASCC1,ANAPC16
SE_02_140400021 chr10:75397017-75408329 11312 21 2 325 9 0 275 1351 ZNF503-AS2,ZNF503,LOC101929234,C10ORF11
SE_02_140400131 chr10:97406771-97428896 22125 131 4 583 59 1 0 540 PGAM1,ZDHHC16,RRP12,EXOSC1
SE_02_140400163 chr11:125164790-125170634 5844 163 1 139 5 0 96 33 PKNOX2,PKNOX2-AS1
SE_02_140400195 chr11:34050846-34054391 3545 195 1 127 7 0 61 445 CAPRIN1
SE_02_140400223 chr11:59536662-59566337 29675 223 9 802 53 1 3 506 OR4D9,OSBP,MIR3162,OR4D11
SE_02_140400206 chr11:62599475-62603281 3806 206 1 93 14 0 52 727 MTA2,EML3,ROM1,TUT1,GANAB,EEF1G,MIR6747,B3GAT3
SE_02_140400150 chr11:62856038-62862602 6564 150 3 167 9 0 3 92 SLC3A2,SNORD29,SNHG1,RNU2-2P,SNORD27,SNORD30,SNORD26,SNORD31,WDR74,SNORD22,SNORD28,STX5,SNORD25
SE_02_140400095 chr11:65416937-65436283 19346 95 4 534 21 2 41 1597 NEAT1,SLC25A45,FRMD8,MIR612
SE_02_140400024 chr11:65470357-65502115 31758 24 15 921 108 4 25 538 MALAT1,SCYL1,NEAT1,MIR612
SE_02_140400225 chr11:65856844-65861675 4831 225 1 136 15 1 75 629 CFL1,MUS81,SNX32,CCDC85B,CTSW,EFEMP2,FIBP,FOSL1
SE_02_140400135 chr11:693247-696976 3729 135 1 94 12 0 26 355 TMEM80,DEAF1,EPS8L2
SE_02_140400149 chr11:8681689-8684731 3042 149 1 129 9 1 28 362 SNORA45A,RPL27A,TRIM66,SNORA45B
SE_02_140400203 chr12:111597266-111600887 3621 203 1 79 8 1 0 633 ATXN2
SE_02_140400030 chr12:121797391-121811983 14592 30 3 378 20 0 213 1579 SETD1B,LINC01089,RHOF,HPD
SE_02_140400220 chr12:124917430-124940642 23212 220 8 794 20 3 2 448 UBC,MIR5188,DHX37
SE_02_140400029 chr12:12714443-12735046 20603 29 7 531 43 2 178 598 CDKN1B,APOLD1,MIR613,GPR19
SE_02_140400235 chr12:49057697-49061843 4146 235 2 68 1 0 142 0 DHH,LMBR1L,PRKAG1,RHEBL1,KMT2D
SE_02_140400213 chr12:54278590-54282515 3925 213 1 139 2 0 70 302 CBX5,HNRNPA1,COPZ1,NFE2,MIR3198-2
SE_02_140400031 chr12:56678197-56690499 12302 31 5 412 22 0 49 291 PTGES3,NACA,BAZ2A,ATP5B,SNORD59B,SNORD59A
SE_02_140400168 chr13:50118532-50130918 12386 168 3 258 19 1 132 153 DLEU1,DLEU2,ST13P4
SE_02_140400151 chr13:71864016-71868016 4000 151 1 91 3 0 65 347 DACH1
SE_02_140400164 chr13:74128272-74136445 8173 164 3 185 6 0 174 197 KLF12
SE_02_140400130 chr13:80338661-80343407 4746 130 3 106 1 0 87 353 SPRY2
SE_02_140400144 chr13:87670629-87674686 4057 144 1 112 1 0 92 335 SLITRK5,MIR4500HG
SE_02_140400056 chr13:91346898-91350516 3618 56 1 76 3 0 106 226 MIR17HG,MIR92A1,MIR19B1,MIR20A,MIR19A,MIR17,GPC5,MIR18A
SE_02_140400141 chr13:93226268-93229528 3260 141 1 107 3 1 53 220 GPC6
SE_02_140400238 chr13:94548431-94550573 2142 238 1 81 5 0 0 67 TGDS
SE_02_140400006 chr13:99967735-99992293 24558 6 6 601 6 3 494 1343 ZIC2,ZIC5,LOC101927437,LINC00554
SE_02_140400117 chr14:28759162-28771002 11840 117 4 229 1 0 353 541 FOXG1-AS1,FOXG1,LINC01551
SE_02_140400111 chr14:34546066-34557216 11150 111 5 226 20 0 3 0 RNVU1-18,EAPP
SE_02_140400134 chr14:60647282-60658416 11134 134 3 262 9 2 242 275 SIX1,SALRNA1
SE_02_140400237 chr14:60721185-60724304 3119 237 1 80 0 0 129 309 SIX4,MNAT1
SE_02_140400125 chr14:68791818-68796461 4643 125 1 225 3 3 91 495 ZFP36L1
SE_02_140400249 chr15:40068940-40103563 34623 249 12 1089 124 8 195 765 BMF,SRP14,SRP14-AS1
SE_02_140400196 chr15:40458321-40466194 7873 196 4 230 7 1 103 926 BAHD1,CHST14
SE_02_140400176 chr15:68270914-68282542 11628 176 3 293 28 0 68 294 FEM1B,CLN6
SE_02_140400040 chr15:68817131-68822027 4896 40 1 115 1 0 100 138 ANP32A,MIR4312,ANP32A-IT1
SE_02_140400250 chr15:76336739-76347610 10871 250 2 284 29 0 166 1077 ISL2,ETFA
SE_02_140400041 chr15:92803954-92833455 29501 41 6 906 18 0 46 0 LINC01578,ASB9P1
SE_02_140400022 chr15:96330766-96361776 31010 22 9 734 2 0 705 1127 NR2F2,MIR1469,NR2F2-AS1
SE_02_140400248 chr16:1609900-1615476 5576 248 2 164 12 1 37 444 CRAMP1,IFT140
SE_02_140400083 chr16:1961883-1966243 4360 83 1 228 40 0 50 661 SNHG9,RPS2,NDUFB10,SNORA78,SNORA64,SNORA10,HS3ST6,GFER,RPL3L,SYNGR3,RNF151,MSRB1,TBL3,NOXO1,ZNF598
SE_02_140400205 chr16:21512642-21521728 9086 205 4 284 12 0 0 538 SLC7A5P2,SMG1P3,MIR3680-1
SE_02_140400198 chr16:24538625-24543117 4492 198 2 114 4 0 82 391 RBBP6
SE_02_140400174 chr16:28807331-28825226 17895 174 3 406 43 16 83 570 ATXN2L,SH2B1,TUFM,MIR4721
SE_02_140400043 chr16:29806524-29811187 4663 43 1 196 3 1 166 1176 MAZ,KIF22,MVP,PRRT2,PAGR1,ZG16
SE_02_140400129 chr16:30063581-30068901 5320 129 2 144 3 0 71 828 ALDOA,C16ORF92,FAM57B,PPP4C,YPEL3,DOC2A,TBX6,GDPD3
SE_02_140400212 chr16:30775060-30778797 3737 212 2 106 8 0 12 386 ZNF629,RNF40,C16ORF93,PHKG2,TMEM265
SE_02_140400110 chr16:3149381-3191994 42613 110 12 1776 170 5 4 1489 CASP16P,ZNF200,ZNF205,OR1F1,OR1F2P,ZNF213,ZNF213-AS1,ZNF205-AS1
SE_02_140400207 chr16:67552499-67567140 14641 207 4 330 27 0 105 192 CTCF,FAM65A,LOC100505942
SE_02_140400217 chr16:70522969-70525842 2873 217 1 90 12 0 15 169 COG4,SF3B3,SNORD111,SNORD111B
SE_02_140400159 chr16:87851524-87869437 17913 159 5 807 33 0 60 264 SLC7A5,MIR6775
SE_02_140400074 chr16:89559286-89566160 6874 74 4 329 44 2 36 1007 SNORD68,RPL13,CPNE7,DPEP1
SE_02_140400068 chr17:16202335-16230424 28089 68 9 709 47 1 60 289 PIGL,NCOR1
SE_02_140400231 chr17:18181847-18187135 5288 231 1 128 11 1 108 403 ALKBH5,LLGL1
SE_02_140400175 chr17:28716832-28722240 5408 175 1 151 6 0 73 652 RPL23A,RAB34,NARR,SNORD42B,SNORD4B,TLCD1,PROCA1,SNORD42A,SNORD4A,TRAF4,NEK8
SE_02_140400221 chr17:41810574-41814312 3738 221 1 94 7 0 57 708 FKBP10,P3H4,JUP,NT5C3B,KLHL10
SE_02_140400005 chr17:43231310-43252634 21324 5 8 0 0 0 0 0 RNU2-1,TMEM106A,LINC00854
SE_02_140400002 chr17:43265760-43301638 35878 2 16 0 0 0 0 0 RNU2-1,LINC00854
SE_02_140400086 chr17:44200363-44222882 22519 86 4 580 42 3 346 2502 UBTF,MIR6782,ASB16,TMUB2,SLC4A1,ATXN7L3,ASB16-AS1
SE_02_140400099 chr17:48609819-48615679 5860 99 1 157 7 0 238 738 HOXB8,HOXB7,HOXB3,HOXB-AS3,HOXB9,MIR10A,HOXB6,HOXB4,HOXB5,MIR196A1
SE_02_140400108 chr17:48624305-48627570 3265 108 1 94 7 1 109 237 HOXB9,HOXB3,HOXB-AS3,HOXB7,MIR10A,HOXB6,HOXB4,HOXB8,HOXB5,MIR196A1
SE_02_140400046 chr17:48992514-49001188 8674 46 4 202 12 1 152 305 IGF2BP1,SNF8,GIP
SE_02_140400173 chr17:76734531-76738606 4075 173 1 118 13 1 136 681 MFSD11,MIR636,SRSF2,MXRA7,METTL23,JMJD6
SE_02_140400132 chr17:7833987-7845288 11301 132 6 284 15 1 299 234 KDM6B,CYB5D1,CHD3,TMEM88,NAA38
SE_02_140400229 chr17:80453734-80455755 2021 229 1 73 1 0 0 0 LOC100294362,NPTX1,MIR4730,ENDOV
SE_02_140400023 chr17:81386766-81404066 17300 23 8 572 44 1 279 274 BAHCC1,MIR4740,LOC100130370,MIR3186
SE_02_140400070 chr17:81510228-81515635 5407 70 2 319 31 1 89 578 ACTG1,FSCN2,FAAP100
SE_02_140400157 chr17:81701210-81704585 3375 157 1 137 14 0 8 490 HGS,MRPL12,PDE6G,OXLD1,SLC25A10,ARL16,CCDC137,MIR6786
SE_02_140400050 chr17:81867058-81872786 5728 50 1 199 10 0 50 1056 ARHGDIA,ANAPC11,FAM195B,ALYREF,PCYT2,NPB,PPP1R27,SIRT7,P4HB
SE_02_140400167 chr17:82517596-82549413 31817 167 12 1001 78 0 46 283 FOXK2
SE_02_140400107 chr18:32091438-32094785 3347 107 1 93 8 0 13 376 RNF138
SE_02_140400122 chr19:10652650-10660274 7624 122 5 263 23 1 38 415 ILF3,ILF3-AS1,SLC44A2,QTRT1
SE_02_140400211 chr19:1249864-1253743 3879 211 1 162 4 1 62 457 MIDN,C19ORF24,CIRBP,CIRBP-AS1,ATP5D,STK11,CBARP,EFNA2
SE_02_140400201 chr19:1272737-1276769 4032 201 1 144 6 0 19 571 CIRBP,C19ORF24,CIRBP-AS1,ATP5D,CBARP,MIDN,EFNA2
SE_02_140400098 chr19:13140839-13168082 27243 98 5 701 47 1 116 1367 NACC1,IER2,STX10,LYL1,TRMT1
SE_02_140400154 chr19:1407581-1416259 8678 154 3 290 14 3 6 131 DAZAP1,GAMT,NDUFS7,APC2,RPS15
SE_02_140400077 chr19:1435344-1445153 9809 77 4 323 12 1 19 484 RPS15,DAZAP1,GAMT,APC2,PCSK4,REEP6,C19ORF25
SE_02_140400214 chr19:1587949-1592827 4878 214 3 147 5 0 27 134 MBD3,UQCR11,MEX3D
SE_02_140400170 chr19:18278133-18318479 40346 170 6 1219 110 6 133 1364 LSM4,MIR3188,JUND,PDE4C,PGPEP1,LOC729966,KIAA1683
SE_02_140400062 chr19:2035425-2065178 29753 62 7 1070 49 2 111 2093 MKNK2,IZUMO4,MOB3A,BTBD2
SE_02_140400112 chr19:2269465-2274551 5086 112 2 223 10 0 35 589 OAZ1,SF3A2,PLEKHJ1,C19ORF35,MIR1227,MIR6789,AMH,JSRP1,MIR4321,LINGO3
SE_02_140400189 chr19:3983315-3985591 2276 189 1 143 6 0 28 249 EEF2,MIR637,SNORD37,PIAS4,DAPK3
SE_02_140400215 chr19:46785022-46788578 3556 215 1 88 9 0 26 379 SLC1A5,SNAR-E,FKRP,STRN4
SE_02_140400065 chr19:47109461-47114836 5375 65 2 157 3 0 140 324 ZC3H4,SAE1
SE_02_140400241 chr19:47598341-47610597 12256 241 4 321 12 0 67 123 GLTSCR1,ZNF541
SE_02_140400145 chr19:48617271-48635490 18219 145 4 520 38 2 149 2663 SPHK2,RPL18,DBP,CA11,SEC1P,SPACA4,NTN5,SULT2B1,FAM83E
SE_02_140400227 chr19:49487464-49490709 3245 227 1 149 11 2 14 270 RPL13A,SNORD33,SNORD32A,FLT3LG,PIH1D1,MIR150,SNORD35B,FCGRT,RCN3,SNORD34,ALDH16A1,RPS11,SNORD35A,SLC17A7
SE_02_140400192 chr19:49493956-49497311 3355 192 1 98 14 1 4 146 RPS11,FLT3LG,RPL13A,PIH1D1,MIR150,SNORD35B,FCGRT,RCN3,SNORD33,SNORD34,SNORD32A,SNORD35A,ALDH16A1
SE_02_140400158 chr19:55653006-55657038 4032 158 1 123 6 0 46 411 CCDC106,U2AF2,ZNF580,EPN1,ZNF581,ZNF865,ZNF784
SE_02_140400072 chr19:5686530-5698905 12375 72 8 574 27 1 53 1684 HSD11B1L,RPL36,LONP1,C19ORF70,CATSPERD
SE_02_140400224 chr19:5717869-5721525 3656 224 1 129 4 0 38 300 LONP1,CATSPERD,C19ORF70,RPL36,HSD11B1L
SE_02_140400082 chr19:779040-802099 23059 82 6 994 62 0 51 250 PTBP1,LPPR3,AZU1,PRTN3,MISP,MIR3187,MIR4745
SE_02_140400226 chr2:10119875-10123919 4044 226 2 105 6 0 11 356 RRM2,C2ORF48,CYS1
SE_02_140400245 chr2:130180097-130183950 3853 245 1 145 10 0 7 598 SMPD4,MZT2B,CCDC74B,TUBA3E
SE_02_140400197 chr2:156331888-156343297 11409 197 2 212 4 1 248 534 NR4A2
SE_02_140400017 chr2:172082589-172102826 20237 17 2 486 12 0 541 1390 DLX1,DLX2,DLX2-AS1
SE_02_140400067 chr2:176094408-176110234 15826 67 6 415 24 0 187 1029 HOXD12,HOXD13,HOXD11,HOXD8,HOXD4,EVX2,HOXD9,HOXD-AS2,HOXD10,MIR10B
SE_02_140400179 chr2:199455322-199460841 5519 179 1 92 1 0 154 867 SATB2,SATB2-AS1
SE_02_140400234 chr2:200861937-200865623 3686 234 1 113 5 0 5 192 CLK1,RNU6-31P,PPIL3,BZW1,NIF3L1,LOC101927795
SE_02_140400228 chr2:202374509-202388090 13581 228 4 310 20 0 100 381 BMPR2
SE_02_140400244 chr2:231661891-231687973 26082 244 9 799 16 3 76 0 PTMA,MIR1244-2
SE_02_140400026 chr2:231705777-231712488 6711 26 2 276 14 1 123 853 PTMA,MIR1244-2
SE_02_140400079 chr2:43218014-43227952 9938 79 3 340 14 0 192 1032 LINC01126,ZFP36L2
SE_02_140400183 chr2:60548955-60556936 7981 183 4 162 1 0 274 93 BCL11A
SE_02_140400209 chr2:61534904-61551040 16136 209 4 431 42 2 119 428 XPO1
SE_02_140400042 chr2:70103481-70143602 40121 42 15 1086 112 1 50 273 LOC100133985,PCBP1,PCBP1-AS1,C2ORF42
SE_02_140400073 chr20:17964627-17970541 5914 73 1 207 25 0 46 431 SNX5,MGME1,SNORD17
SE_02_140400202 chr20:2101178-2104231 3053 202 1 93 5 0 66 433 STK35
SE_02_140400137 chr20:2468590-2470931 2341 137 1 83 9 0 4 105 SNRPB,ZNF343,SNORD119
SE_02_140400136 chr20:47354855-47361619 6764 136 2 170 1 4 77 160 ZMYND8,LOC100131496
SE_02_140400251 chr20:58888389-58893407 5018 251 1 114 9 0 0 478 GNAS,LOC101927932,GNAS-AS1
SE_02_140400094 chr21:37365407-37370642 5235 94 2 154 11 1 24 159 DYRK1A
SE_02_140400008 chr21:8219443-8249902 30459 8 8 0 0 0 0 0 RNA28S5,MIR6724-1,LOC100507412,MIR3687-1,MIR3648-1,RNA5-8S5,RNA18S5
SE_02_140400012 chr21:8387741-8420372 32631 12 10 0 0 0 0 0 RNA5-8S5,RNA28S5,LOC100507412,MIR6724-1,RNA18S5,RNA45S5
SE_02_140400013 chr21:8446240-8471414 25174 13 9 0 0 0 0 0 RNA45S5
SE_02_140400138 chr22:19940843-19947875 7032 138 2 213 42 1 8 172 TXNRD2,COMT,MIR4761
SE_02_140400177 chr22:20078735-20082392 3657 177 1 110 15 0 22 161 DGCR8,RANBP1,ZDHHC8,MIR185,MIR3618,MIR1306,TANGO2,MIR6816,TRMT2A
SE_02_140400044 chr22:29266433-29270507 4074 44 2 145 4 0 26 314 RHBDD3,EWSR1,RASL10A,GAS2L1
SE_02_140400161 chr22:37559971-37563697 3726 161 1 88 10 0 13 182 CDC42EP1,GGA1,LGALS2,CARD10
SE_02_140400032 chr22:38314706-38320174 5468 32 1 146 5 1 52 290 CSNK1E,LOC400927-CSNK1E,TMEM184B
SE_02_140400133 chr22:38393675-38413022 19347 133 4 533 44 0 0 375 LOC400927-CSNK1E,LOC400927,KCNJ4
SE_02_140400036 chr22:38504009-38507612 3603 36 1 107 7 0 33 201 DDX17,KDELR3,KCNJ4
SE_02_140400057 chr22:39316654-39321295 4641 57 1 194 26 0 36 548 RNU86,RPL3,SNORD43,SNORD83B,SYNGR1,SNORD83A
SE_02_140400051 chr22:39519025-39535316 16291 51 5 547 31 0 86 962 ATF4,RPS19BP1,CACNA1I,MIEF1,MGAT3-AS1,MGAT3
SE_02_140400106 chr22:41443843-41449108 5265 106 3 121 10 0 39 274 TOB2,ACO2,PHF5A
SE_02_140400185 chr22:49959617-49972036 12419 185 3 416 16 1 85 881 MIR6821,PIM3,IL17REL,CRELD2,ALG12
SE_02_140400009 chr22_KI270733v1_random:135676-175493 39817 9 8 0 0 0 0 0 MIR3687-1,RNA5-8S5,RNA18S5
SE_02_140400186 chr3:129181193-129185297 4104 186 2 111 4 0 46 139 CNBP,ISY1-RAB43
SE_02_140400180 chr3:136741328-136752490 11162 180 3 274 24 0 77 140 STAG1
SE_02_140400120 chr3:9395399-9403510 8111 120 4 242 15 0 203 537 SETD5,THUMPD3-AS1,THUMPD3
SE_02_140400152 chr4:102824721-102829437 4716 152 1 139 12 0 84 450 LOC105377348,UBE2D3,CISD2,LOC102723704
SE_02_140400230 chr4:82371735-82374167 2432 230 1 83 2 0 47 213 HNRNPD
SE_02_140400246 chr5:134002702-134006352 3650 246 1 76 4 0 28 268 VDAC1,C5ORF15
SE_02_140400190 chr5:137752168-137755481 3313 190 1 92 5 0 72 434 HNRNPA0,NPY6R,KLHL3
SE_02_140400128 chr5:154753769-154761902 8133 128 4 179 13 0 60 517 LARP1
SE_02_140400081 chr5:173299467-173330978 31511 81 5 886 3 2 196 1329 STC2,MIR8056
SE_02_140400090 chr5:179621344-179635089 13745 90 2 432 44 2 35 465 HNRNPH1,LOC101928445,C5ORF60,CBY3
SE_02_140400219 chr5:179811577-179821864 10287 219 3 313 16 0 51 498 SQSTM1,LTC4S,MGAT4B,C5ORF45,MIR1229
SE_02_140400121 chr5:181159717-181191712 31995 121 9 1051 118 1 3 622 LOC102577426,TRIM7,TRIM41,OR2V1,MIR4638,OR2V2
SE_02_140400025 chr5:181241637-181249253 7616 25 1 260 38 0 29 282 GNB2L1,SNORD96A,CTC-338M12.4,SNORD95,TRIM7,LOC102577426,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_140400010 chr5:394176-415907 21731 10 4 710 108 3 33 47 AHRR,EXOC3-AS1,EXOC3
SE_02_140400155 chr5:57171285-57188677 17392 155 6 579 17 1 86 270 GPBP1
SE_02_140400194 chr5:88660555-88691114 30559 194 5 661 19 4 588 892 LINC00461,MIR9-2
SE_02_140400069 chr5:93579280-93604786 25506 69 7 471 13 1 653 1079 NR2F1,NR2F1-AS1,MIR2277
SE_02_140400028 chr6:10403280-10427057 23777 28 6 617 15 1 268 1230 TFAP2A,TFAP2A-AS1,MIR5689,LINC00518
SE_02_140400165 chr6:108557268-108562810 5542 165 2 138 6 1 150 519 FOXO3
SE_02_140400240 chr6:110874819-110877580 2761 240 1 80 2 0 35 96 AMD1
SE_02_140400088 chr6:113854329-113861016 6687 88 3 154 4 0 164 505 MARCKS,FLJ34503,LINC01268
SE_02_140400222 chr6:142944255-142947929 3674 222 1 90 0 0 189 148 HIVEP2
SE_02_140400188 chr6:151388539-151392691 4152 188 2 121 8 0 11 139 ZBTB2
SE_02_140400063 chr6:156776709-156782847 6138 63 2 114 2 0 53 634 MIR4466,ARID1B
SE_02_140400007 chr6:1597021-1629827 32806 7 4 872 6 1 400 917 GMDS,FOXC1,FOXCUT
SE_02_140400232 chr6:163413168-163416867 3699 232 1 87 2 0 69 534 QKI,CAHM
SE_02_140400193 chr6:17703804-17706993 3189 193 1 82 2 0 40 230 NUP153
SE_02_140400101 chr6:21586932-21598169 11237 101 3 267 2 0 200 765 SOX4
SE_02_140400236 chr6:24719210-24722356 3146 236 2 85 13 1 60 9 C6ORF62
SE_02_140400169 chr6:26304836-26332375 27539 169 12 861 151 31 0 503 HIST1H3G,BTN3A2,HIST1H2BI,HIST1H4H
SE_02_140400200 chr6:27893407-27903618 10211 200 3 312 28 5 12 198 HIST1H2BO,HIST1H2AL,HIST1H3I,HIST1H2AM,HIST1H4L,HIST1H3J,OR2B2,HIST1H1B
SE_02_140400147 chr6:35467553-35470552 2999 147 1 100 12 0 26 414 RPL10A,MIR7111,FANCE,TULP1,TEAD3
SE_02_140400166 chr6:4008118-4023023 14905 166 5 355 45 1 27 174 PRPF4B
SE_02_140400126 chr6:42781158-42784318 3160 126 1 63 5 0 18 93 TBCC,GLTSCR1L
SE_02_140400140 chr6:43769681-43773551 3870 140 1 91 7 2 145 361 VEGFA
SE_02_140400243 chr6:75600370-75604012 3642 243 2 90 4 0 33 271 SENP6
SE_02_140400053 chr7:105003514-105015920 12406 53 4 378 13 0 94 724 KMT2E,KMT2E-AS1,LINC01004
SE_02_140400160 chr7:114082655-114088573 5918 160 2 149 2 0 129 155 FOXP2
SE_02_140400142 chr7:128530262-128533420 3158 142 1 70 18 0 88 0 METTL2B
SE_02_140400156 chr7:139090932-139110165 19233 156 6 486 46 1 37 219 ZC3HAV1,TTC26
SE_02_140400064 chr7:148697946-148704069 6123 64 2 159 10 0 69 283 CUL1
SE_02_140400187 chr7:149125015-149128657 3642 187 1 110 23 0 0 241 ZNF398,ZNF425,ZNF786
SE_02_140400143 chr7:149144406-149149816 5410 143 1 107 13 0 10 299 ZNF398,ZNF282,ZNF425
SE_02_140400052 chr7:151079439-151084000 4561 52 1 116 4 0 108 1114 TMUB1,FASTK,SLC4A2,ASIC3,AGAP3,CDK5
SE_02_140400218 chr7:155456644-155460508 3864 218 1 90 3 0 99 328 EN2
SE_02_140400027 chr7:23467259-23477011 9752 27 3 204 11 0 112 262 IGF2BP3,RPS2P32
SE_02_140400048 chr7:26198311-26203966 5655 48 2 278 5 0 55 397 HNRNPA2B1,CBX3,NFE2L3
SE_02_140400054 chr7:27096144-27117455 21311 54 7 491 48 9 501 1389 HOXA2,HOXA3,HOTAIRM1,HOXA-AS3,HOXA5,HOXA-AS2,HOXA7,HOXA1,HOXA4,HOXA9,HOXA6
SE_02_140400055 chr7:27138796-27143661 4865 55 1 101 9 1 173 373 HOXA-AS3,HOXA5,HOXA10,HOXA11,HOXA10-AS,MIR196B,HOXA-AS2,HOXA7,HOXA1,HOXA2,HOXA3,HOXA4,HOXA9,HOTAIRM1,HOXA6,HOXA10-HOXA9,HOXA11-AS
SE_02_140400015 chr7:27143987-27153437 9450 15 1 227 22 2 164 657 HOXA-AS3,HOXA6,HOXA10,HOXA11,HOXA10-AS,MIR196B,HOTTIP,HOXA-AS2,HOXA7,HOXA3,HOXA1,HOXA2,HOXA5,HOXA4,HOXA9,HOTAIRM1,HOXA10-HOXA9,HOXA11-AS,HOXA13
SE_02_140400011 chr7:27162937-27178342 15405 11 1 455 18 0 348 1158 MIR196B,HOXA10,HOXA10-HOXA9,HOXA10-AS,HOXA9,HOXA11,HOXA-AS3,HOTTIP,HOXA-AS2,HOXA7,HOXA3,HOXA5,HOXA4,HOXA13,HOXA6,HOXA11-AS
SE_02_140400104 chr7:27182707-27186657 3950 104 1 111 7 2 160 526 HOXA11-AS,HOXA11,HOXA10,HOXA10-AS,HOXA-AS3,HOTTIP,HOXA7,HOXA5,MIR196B,HOXA9,HOXA13,HOXA6,HOXA10-HOXA9
SE_02_140400210 chr7:30593707-30596666 2959 210 1 93 7 0 17 181 GARS,LOC401320
SE_02_140400109 chr7:39946329-39952863 6534 109 2 175 2 1 57 469 CDK13
SE_02_140400014 chr7:5418789-5430065 11276 14 3 339 3 0 244 846 TNRC18
SE_02_140400020 chr8:37693477-37704008 10531 20 5 253 2 0 262 781 ZNF703,LOC102723701,ERLIN2,LOC101929622,LOC728024
SE_02_140400097 chr9:129482057-129500657 18600 97 3 521 30 0 80 419 LINC00963
SE_02_140400075 chr9:131367191-131418507 51316 75 14 1504 77 1 65 146 PRRC2B
SE_02_140400119 chr9:21987026-22006234 19208 119 5 425 20 15 34 660 CDKN2B-AS1,CDKN2A,CDKN2B,CDKN2A-AS1
SE_02_140400089 chr9:70411023-70421345 10322 89 3 245 14 0 263 385 KLF9
SE_02_140400103 chr9:79571971-79574183 2212 103 1 52 1 0 43 284 TLE4
SE_02_140400033 chr9:97982274-97986441 4167 33 1 122 10 0 0 216 ANP32B,HEMGN
SE_02_140400004 chrUn_GL000220v1:104045-156610 52565 4 11 0 0 0 0 0 RNA45S5,RNA5-8S5,LOC100507412,MIR6724-1,RNA28S5,RNA18S5
SE_02_140400252 chrX:101390544-101393077 2533 252 1 57 2 0 11 325 BTK,RPL36A,RPL36A-HNRNPH2,TIMM8A,HNRNPH2,ARMCX4,GLA
SE_02_140400035 chrX:114837998-114841818 3820 35 2 73 3 0 0 0 HTR2C,MIR448
SE_02_140400003 chrX:115725843-115739027 13184 3 9 1 0 0 0 0 PLS3
SE_02_140400001 chrX:115843380-115893178 49798 1 20 221 10 0 0 0 DANT2
SE_02_140400045 chrX:123958793-123964156 5363 45 2 71 1 0 139 377 STAG2,LOC101928402
SE_02_140400076 chrX:153970514-153974214 3700 76 1 59 1 1 79 431 HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP
SE_02_140400091 chrX:24143543-24151132 7589 91 2 108 3 1 109 275 ZFX,ZFX-AS1
SE_02_140400016 chrX:40083544-40110025 26481 16 8 410 1 0 669 173 BCOR
SE_02_140400034 chrX:40145064-40177158 32094 34 11 574 0 0 496 86 BCOR

SE annotation visualization


Information description of sample and annotation

Case ID: Name:GSM4859387
Input ID: Name:GSM4859385
Common SNP: dbSNP
eQTL: GTEx, HaploReg v4.1, PancanQTL
Risk SNP : GWAS Catalog, GWASdb v2.0
TFBS: TFBS Conserved of UCSC
CRISPR/Cas9 target site: CRISPR Targets of UCSC

Software and parameters used

Read Mapping: bowtie(v2.4.4) -p 10 -x -S -U
Peak Calling: macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb