Sample overview
| Species: | Human |
| Biosample type: | Cell line |
| Tissue type: | Lung |
| Data source: | NCBI GEO/SRA |
| Biosample name: | NCI-H211_no infection |
| Sample ID: | Sample_02_0688 |
| SE ID | SE Region | Size | Rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_068800085 | chr1:1058842-1080539 |
21697 | 85 | 10 | 685 | 486 | 2 | 27 | 1353 | RNF223,C1ORF159,ISG15,AGRN |
| SE_02_068800147 | chr1:10835414-10843728 |
8314 | 147 | 2 | 268 | 6 | 0 | 0 | 0 | CASZ1 |
| SE_02_068800173 | chr1:110330300-110345254 |
14954 | 173 | 9 | 357 | 240 | 3 | 0 | 674 | LOC440600,RBM15,SLC16A4 |
| SE_02_068800061 | chr1:1157475-1168385 |
10910 | 61 | 1 | 441 | 176 | 0 | 41 | 292 | MIR200B,MIR200A,TTLL10,LINC01342,C1ORF159,TNFRSF18,TNFRSF4,MIR429 |
| SE_02_068800176 | chr1:11907780-11910230 |
2450 | 176 | 1 | 278 | 246 | 0 | 0 | 0 | RNU5E-1,KIAA2013,PLOD1,NPPB |
| SE_02_068800103 | chr1:120304642-120356115 |
51473 | 103 | 17 | 339 | 916 | 0 | 151 | 286 | PFN1P2,SEC22B |
| SE_02_068800229 | chr1:120912119-120929332 |
17213 | 229 | 7 | 104 | 365 | 0 | 2 | 72 | LINC00623,PPIAL4A,RNVU1-4 |
| SE_02_068800207 | chr1:145199638-145217112 |
17474 | 207 | 5 | 16 | 28 | 0 | 90 | 265 | LOC103091866 |
| SE_02_068800188 | chr1:146368855-146388556 |
19701 | 188 | 5 | 0 | 364 | 0 | 0 | 0 | RNVU1-18,NUDT4P1 |
| SE_02_068800190 | chr1:148441923-148461089 |
19166 | 190 | 12 | 66 | 71 | 0 | 111 | 581 | LINC01138,LOC100132057,PPIAL4G,RNVU1-3 |
| SE_02_068800125 | chr1:149162341-149213534 |
51193 | 125 | 20 | 389 | 437 | 0 | 115 | 541 | LOC653513,NBPF9 |
| SE_02_068800121 | chr1:149606064-149637813 |
31749 | 121 | 9 | 9 | 212 | 0 | 176 | 724 | LINC00869,PPIAL4C |
| SE_02_068800214 | chr1:149884154-149889160 |
5006 | 214 | 1 | 126 | 42 | 0 | 66 | 509 | HIST2H2AB,HIST2H2AC,HIST2H2BE,BOLA1,MTMR11,HIST2H2AA3,HIST2H2BC,HIST2H3A,SV2A,HIST2H2AA4,SF3B4,HIST2H3C |
| SE_02_068800210 | chr1:150560076-150580582 |
20506 | 210 | 6 | 544 | 971 | 4 | 87 | 915 | ADAMTSL4,MCL1,ADAMTSL4-AS1,ENSA,FALEC,MIR4257 |
| SE_02_068800076 | chr1:15832839-15852892 |
20053 | 76 | 5 | 557 | 540 | 4 | 85 | 732 | FLJ37453,SPEN,UQCRHL |
| SE_02_068800082 | chr1:16638459-16667924 |
29465 | 82 | 7 | 306 | 55 | 0 | 17 | 1304 | MST1P2,RNVU1-18,FAM231C,CROCCP2,NBPF1 |
| SE_02_068800165 | chr1:16739460-16741876 |
2416 | 165 | 1 | 1 | 0 | 0 | 0 | 94 | RNVU1-18,MST1L,ESPNP,FAM231A |
| SE_02_068800050 | chr1:16895234-16914973 |
19739 | 50 | 5 | 742 | 696 | 0 | 2 | 64 | RNVU1-18,CROCC |
| SE_02_068800120 | chr1:182337369-182396870 |
59501 | 120 | 16 | 1636 | 775 | 2 | 0 | 1284 | GLUL,LINC00272,LINC01344,TEDDM1 |
| SE_02_068800236 | chr1:192314140-192326614 |
12474 | 236 | 10 | 289 | 28 | 1 | 70 | 20 | RGS21 |
| SE_02_068800016 | chr1:192625679-192649773 |
24094 | 16 | 9 | 639 | 77 | 11 | 70 | 138 | RGS13,RGS1 |
| SE_02_068800086 | chr1:193018657-193084040 |
65383 | 86 | 18 | 1371 | 199 | 3 | 162 | 965 | TROVE2,UCHL5,GLRX2,CDC73 |
| SE_02_068800115 | chr1:193178478-193196124 |
17646 | 115 | 6 | 429 | 101 | 3 | 170 | 284 | CDC73,B3GALT2,MIR1278 |
| SE_02_068800054 | chr1:202007752-202119075 |
111323 | 54 | 35 | 3072 | 434 | 6 | 189 | 1553 | ELF3,PTPRVP,MIR6740,GPR37L1,ARL8A,PTPN7,RNPEP |
| SE_02_068800191 | chr1:204398363-204423239 |
24876 | 191 | 4 | 574 | 67 | 4 | 89 | 825 | PPP1R15B,PIK3C2B,PLEKHA6,LINC00628 |
| SE_02_068800180 | chr1:204475418-204508233 |
32815 | 180 | 8 | 862 | 269 | 6 | 53 | 370 | PIK3C2B,MDM4 |
| SE_02_068800046 | chr1:207747778-207756820 |
9042 | 46 | 2 | 214 | 68 | 0 | 12 | 160 | CD46,MIR29C,MIR29B2 |
| SE_02_068800171 | chr1:213982570-214003887 |
21317 | 171 | 6 | 483 | 74 | 4 | 357 | 497 | PROX1-AS1,PROX1 |
| SE_02_068800187 | chr1:225766566-225780071 |
13505 | 187 | 5 | 384 | 143 | 1 | 62 | 127 | SRP9,EPHX1 |
| SE_02_068800208 | chr1:226061131-226065313 |
4182 | 208 | 2 | 109 | 16 | 0 | 92 | 208 | H3F3AP4,H3F3A |
| SE_02_068800164 | chr1:228486196-228492034 |
5838 | 164 | 2 | 174 | 70 | 0 | 37 | 522 | RNF187,BTNL10,HIST3H2BB,MIR4666A,HIST3H2A |
| SE_02_068800139 | chr1:234599275-234613451 |
14176 | 139 | 2 | 392 | 67 | 2 | 0 | 780 | IRF2BP2,LOC101927787,LINC00184 |
| SE_02_068800047 | chr1:244833274-244837938 |
4664 | 47 | 1 | 118 | 30 | 0 | 15 | 213 | COX20,HNRNPU,HNRNPU-AS1 |
| SE_02_068800118 | chr1:244861133-244866022 |
4889 | 118 | 2 | 141 | 8 | 0 | 98 | 374 | HNRNPU,COX20,HNRNPU-AS1 |
| SE_02_068800060 | chr1:244968822-244972925 |
4103 | 60 | 2 | 134 | 138 | 1 | 4 | 254 | LOC101928068,EFCAB2 |
| SE_02_068800123 | chr1:26692050-26708147 |
16097 | 123 | 5 | 373 | 153 | 1 | 347 | 600 | ARID1A |
| SE_02_068800172 | chr1:45682720-45689362 |
6642 | 172 | 2 | 167 | 374 | 0 | 45 | 266 | TMEM69,GPBP1L1,RPS15AP10 |
| SE_02_068800196 | chr1:46300809-46306278 |
5469 | 196 | 4 | 116 | 85 | 0 | 75 | 218 | UQCRH,LRRC41,NSUN4 |
| SE_02_068800250 | chr1:62435092-62439808 |
4716 | 250 | 3 | 169 | 237 | 7 | 38 | 341 | USP1 |
| SE_02_068800209 | chr1:6445852-6451432 |
5580 | 209 | 1 | 159 | 82 | 0 | 89 | 427 | ESPN,PLEKHG5,MIR4252,TNFRSF25,HES2 |
| SE_02_068800257 | chr1:76476377-76511801 |
35424 | 257 | 12 | 988 | 31 | 1 | 72 | 0 | ST6GALNAC3,ST6GALNAC5 |
| SE_02_068800170 | chr1:77976087-77980700 |
4613 | 170 | 2 | 137 | 35 | 0 | 0 | 119 | FUBP1,DNAJB4 |
| SE_02_068800018 | chr1_KI270713v1_random:3695-31027 |
27332 | 18 | 6 | 0 | 0 | 0 | 0 | 0 | RNU1-1 |
| SE_02_068800199 | chr10:34627647-34670597 |
42950 | 199 | 14 | 1213 | 288 | 0 | 37 | 0 | PARD3 |
| SE_02_068800231 | chr11:11840903-11845780 |
4877 | 231 | 3 | 119 | 36 | 0 | 40 | 295 | USP47 |
| SE_02_068800051 | chr11:120236427-120261548 |
25121 | 51 | 12 | 719 | 65 | 2 | 152 | 905 | POU2F3,LOC649133,OAF |
| SE_02_068800160 | chr11:123060184-123064803 |
4619 | 160 | 1 | 206 | 38 | 2 | 55 | 359 | HSPA8,SNORD14E,LOC341056,SNORD14C,SNORD14D |
| SE_02_068800033 | chr11:12316376-12332040 |
15664 | 33 | 8 | 431 | 26 | 0 | 89 | 195 | MICALCL,PARVA |
| SE_02_068800128 | chr11:2251183-2273378 |
22195 | 128 | 10 | 709 | 167 | 2 | 79 | 638 | ASCL2,TSPAN32,C11ORF21 |
| SE_02_068800230 | chr11:34044777-34054806 |
10029 | 230 | 2 | 311 | 101 | 1 | 63 | 445 | CAPRIN1 |
| SE_02_068800256 | chr11:47765201-47768976 |
3775 | 256 | 1 | 114 | 226 | 0 | 20 | 219 | FNBP4,AGBL2 |
| SE_02_068800065 | chr11:65416231-65427386 |
11155 | 65 | 6 | 328 | 154 | 2 | 41 | 718 | NEAT1,SLC25A45,FRMD8,MIR612 |
| SE_02_068800022 | chr11:65476354-65510820 |
34466 | 22 | 14 | 1001 | 1311 | 4 | 44 | 963 | MALAT1,SCYL1,LTBP3,MIR612 |
| SE_02_068800081 | chr11:69270983-69312720 |
41737 | 81 | 15 | 1377 | 216 | 2 | 114 | 665 | MYEOV |
| SE_02_068800213 | chr11:69325707-69339674 |
13967 | 213 | 8 | 415 | 78 | 1 | 11 | 0 | MYEOV |
| SE_02_068800068 | chr11:73033672-73076533 |
42861 | 68 | 18 | 1017 | 140 | 1 | 42 | 0 | FCHSD2 |
| SE_02_068800154 | chr11:73778745-73785033 |
6288 | 154 | 4 | 140 | 117 | 0 | 27 | 0 | RAB6A,MRPL48 |
| SE_02_068800126 | chr11:79847707-79872875 |
25168 | 126 | 9 | 856 | 0 | 2 | 55 | 0 | TENM4 |
| SE_02_068800011 | chr11:79931582-79949355 |
17773 | 11 | 5 | 499 | 1 | 0 | 76 | 0 | TENM4 |
| SE_02_068800025 | chr11:80139714-80155561 |
15847 | 25 | 6 | 457 | 1 | 3 | 53 | 0 | LOC101928944 |
| SE_02_068800174 | chr11:83155751-83160853 |
5102 | 174 | 2 | 130 | 20 | 0 | 120 | 207 | PCF11,ANKRD42 |
| SE_02_068800221 | chr11:85661145-85665926 |
4781 | 221 | 2 | 96 | 25 | 0 | 111 | 515 | CREBZF,TMEM126B,TMEM126A,CCDC89,DLG2 |
| SE_02_068800228 | chr11:86239464-86246487 |
7023 | 228 | 3 | 193 | 83 | 0 | 45 | 183 | EED,MIR6755 |
| SE_02_068800194 | chr11:92222679-92240786 |
18107 | 194 | 6 | 477 | 16 | 1 | 88 | 0 | FAT3 |
| SE_02_068800064 | chr11:92477568-92510713 |
33145 | 64 | 19 | 880 | 8 | 0 | 148 | 0 | FAT3 |
| SE_02_068800026 | chr11:92524668-92613964 |
89296 | 26 | 28 | 2701 | 142 | 6 | 296 | 40 | FAT3 |
| SE_02_068800204 | chr11:93737683-93742724 |
5041 | 204 | 3 | 134 | 106 | 1 | 8 | 298 | TAF1D,C11ORF54,SNORA8,SNORD5,SNORD6,SNORA25,SCARNA9,MIR1304,SNORA32,SNORA40,SNORA18,MED17,SNORA1 |
| SE_02_068800077 | chr11:95788276-95792010 |
3734 | 77 | 1 | 150 | 84 | 1 | 40 | 384 | CEP57,FAM76B |
| SE_02_068800035 | chr11:95914012-95935203 |
21191 | 35 | 7 | 508 | 167 | 3 | 47 | 241 | MTMR2 |
| SE_02_068800241 | chr12:104285784-104289943 |
4159 | 241 | 1 | 114 | 26 | 0 | 13 | 237 | TXNRD1,EID3 |
| SE_02_068800023 | chr12:106773536-106822940 |
49404 | 23 | 21 | 1229 | 358 | 1 | 178 | 360 | RIC8B,LOC100287944 |
| SE_02_068800252 | chr12:10798821-10808655 |
9834 | 252 | 1 | 291 | 212 | 2 | 0 | 210 | TAS2R7,TAS2R8,TAS2R9,PRR4,LOC101928162,TAS2R10 |
| SE_02_068800240 | chr12:11179282-11189729 |
10447 | 240 | 1 | 221 | 958 | 0 | 0 | 108 | TAS2R42,SMIM10L1,TAS2R30,PRH1-PRR4,PRH1 |
| SE_02_068800249 | chr12:111834702-111845361 |
10659 | 249 | 2 | 298 | 544 | 4 | 15 | 506 | MAPKAPK5,MAPKAPK5-AS1,MIR6761 |
| SE_02_068800003 | chr12:114662433-114704425 |
41992 | 3 | 8 | 1105 | 53 | 5 | 354 | 1265 | TBX3 |
| SE_02_068800093 | chr12:114900505-114926588 |
26083 | 93 | 6 | 743 | 50 | 24 | 77 | 0 | TBX3 |
| SE_02_068800067 | chr12:121796585-121812072 |
15487 | 67 | 7 | 418 | 253 | 0 | 218 | 1742 | SETD1B,LINC01089,RHOF,HPD |
| SE_02_068800122 | chr12:12716312-12726775 |
10463 | 122 | 1 | 311 | 64 | 2 | 154 | 598 | CDKN1B,APOLD1,MIR613,GPR19 |
| SE_02_068800203 | chr12:14383946-14404875 |
20929 | 203 | 9 | 456 | 46 | 4 | 67 | 31 | ATF7IP |
| SE_02_068800127 | chr12:24845987-24854567 |
8580 | 127 | 3 | 237 | 34 | 1 | 4 | 51 | BCAT1 |
| SE_02_068800225 | chr12:24937637-24949921 |
12284 | 225 | 4 | 345 | 53 | 5 | 0 | 162 | BCAT1,C12ORF77 |
| SE_02_068800006 | chr12:25050774-25101123 |
50349 | 6 | 14 | 1371 | 793 | 11 | 64 | 571 | LRMP |
| SE_02_068800235 | chr12:26100897-26123315 |
22418 | 235 | 5 | 573 | 42 | 2 | 77 | 475 | BHLHE41,RASSF8 |
| SE_02_068800075 | chr12:45723690-45733652 |
9962 | 75 | 3 | 212 | 14 | 0 | 99 | 547 | ARID2,LINC00938 |
| SE_02_068800101 | chr12:54277167-54283407 |
6240 | 101 | 4 | 206 | 20 | 0 | 88 | 410 | CBX5,HNRNPA1,COPZ1,NFE2,MIR3198-2 |
| SE_02_068800178 | chr12:6953251-6965317 |
12066 | 178 | 2 | 428 | 128 | 3 | 135 | 1283 | MIR200C,PTPN6,MIR141,ENO2,SCARNA12,PHB2,RNU7-1,LRRC23,C12ORF57,ATN1,EMG1 |
| SE_02_068800181 | chr12:92133662-92148178 |
14516 | 181 | 6 | 346 | 36 | 2 | 132 | 672 | C12ORF79,BTG1 |
| SE_02_068800092 | chr12_GL877876v1_alt:19-32181 |
32162 | 92 | 16 | 0 | 0 | 0 | 0 | 0 | TAS2R9,TAS2R7,TAS2R8,TAS2R10,TAS2R45 |
| SE_02_068800094 | chr12_KI270904v1_alt:11-32102 |
32091 | 94 | 14 | 0 | 0 | 0 | 0 | 0 | TAS2R9,TAS2R7,TAS2R8,TAS2R10 |
| SE_02_068800029 | chr12_KI270904v1_alt:351710-395710 |
44000 | 29 | 19 | 0 | 0 | 0 | 0 | 0 | SMIM10L1,TAS2R42,PRH1,PRH1-PRR4 |
| SE_02_068800019 | chr13:105015444-105039114 |
23670 | 19 | 10 | 694 | 0 | 0 | 75 | 0 | DAOA |
| SE_02_068800032 | chr14:34545660-34557497 |
11837 | 32 | 3 | 228 | 84 | 0 | 3 | 0 | RNVU1-18,EAPP |
| SE_02_068800255 | chr14:34872312-34876054 |
3742 | 255 | 2 | 84 | 109 | 1 | 19 | 318 | BAZ1A |
| SE_02_068800038 | chr14:55687979-55712813 |
24834 | 38 | 7 | 626 | 309 | 13 | 16 | 0 | RPL13AP3 |
| SE_02_068800107 | chr14:56117388-56148848 |
31460 | 107 | 19 | 891 | 172 | 7 | 130 | 235 | PELI2 |
| SE_02_068800184 | chr14:56579099-56590726 |
11627 | 184 | 7 | 332 | 29 | 2 | 0 | 263 | TMEM260 |
| SE_02_068800220 | chr14:56606670-56613303 |
6633 | 220 | 5 | 206 | 18 | 3 | 33 | 137 | TMEM260 |
| SE_02_068800106 | chr14:68789222-68796617 |
7395 | 106 | 3 | 293 | 19 | 3 | 164 | 825 | ZFP36L1 |
| SE_02_068800007 | chr14:79517685-79712664 |
194979 | 7 | 76 | 5473 | 104 | 28 | 670 | 165 | NRXN3 |
| SE_02_068800116 | chr14:81218784-81222323 |
3539 | 116 | 1 | 86 | 26 | 0 | 102 | 354 | GTF2A1,SNORA79 |
| SE_02_068800141 | chr14:91507810-91511519 |
3709 | 141 | 1 | 116 | 12 | 0 | 39 | 355 | PPP4R3A |
| SE_02_068800104 | chr14:95645862-95680529 |
34667 | 104 | 11 | 1066 | 258 | 2 | 10 | 1456 | TCL6,TCL1B,TCL1A |
| SE_02_068800144 | chr15:42269014-42281830 |
12816 | 144 | 5 | 380 | 282 | 2 | 32 | 411 | TMEM87A,GANC |
| SE_02_068800108 | chr15:80383523-80416048 |
32525 | 108 | 12 | 902 | 242 | 2 | 111 | 178 | ARNT2,LINC00927 |
| SE_02_068800089 | chr15:92807753-92833255 |
25502 | 89 | 6 | 787 | 47 | 0 | 46 | 0 | LINC01578,ASB9P1 |
| SE_02_068800056 | chr15:92899770-92918378 |
18608 | 56 | 3 | 531 | 48 | 0 | 136 | 299 | CHD2,MIR3175,LINC01578 |
| SE_02_068800185 | chr15:98851872-98867868 |
15996 | 185 | 3 | 453 | 18 | 1 | 89 | 0 | IGF1R,MIR4714 |
| SE_02_068800110 | chr16:47438058-47467257 |
29199 | 110 | 8 | 717 | 115 | 1 | 78 | 465 | PHKB,ITFG1 |
| SE_02_068800091 | chr16:72424015-72432232 |
8217 | 91 | 2 | 190 | 57 | 0 | 160 | 490 | LINC01572 |
| SE_02_068800095 | chr16:72913272-72962049 |
48777 | 95 | 24 | 1630 | 168 | 4 | 399 | 761 | ZFHX3 |
| SE_02_068800055 | chr16:73016143-73071907 |
55764 | 55 | 13 | 1524 | 113 | 6 | 620 | 430 | ZFHX3,HCCAT5 |
| SE_02_068800049 | chr17:39194813-39210113 |
15300 | 49 | 4 | 468 | 140 | 2 | 117 | 706 | RPL19,CACNB1,PLXDC1,ARL5C,STAC2 |
| SE_02_068800212 | chr17:39453643-39465464 |
11821 | 212 | 3 | 290 | 218 | 1 | 48 | 371 | CDK12,MED1 |
| SE_02_068800001 | chr17:43231390-43323823 |
92433 | 1 | 50 | 530 | 1619 | 0 | 8 | 359 | RNU2-1,TMEM106A,LINC00854 |
| SE_02_068800031 | chr17:43358736-43370793 |
12057 | 31 | 4 | 499 | 1782 | 3 | 0 | 150 | LINC00910,ARL4D |
| SE_02_068800071 | chr17:45146592-45155726 |
9134 | 71 | 3 | 265 | 134 | 1 | 117 | 797 | HEXIM1,MIR6784,HEXIM2,PLCD3,ACBD4 |
| SE_02_068800098 | chr17:48045951-48069094 |
23143 | 98 | 10 | 603 | 902 | 6 | 323 | 1632 | NFE2L1,SNX11,CBX1,COPZ2,MIR152 |
| SE_02_068800195 | chr17:58004872-58008637 |
3765 | 195 | 2 | 107 | 17 | 0 | 133 | 343 | SRSF1,VEZF1,CUEDC1 |
| SE_02_068800254 | chr17:58412215-58417605 |
5390 | 254 | 2 | 98 | 82 | 1 | 64 | 239 | RNF43 |
| SE_02_068800079 | chr17:59617427-59627433 |
10006 | 79 | 4 | 242 | 211 | 0 | 73 | 205 | CLTC |
| SE_02_068800027 | chr17:59829139-59860777 |
31638 | 27 | 11 | 743 | 503 | 2 | 115 | 358 | TUBD1,MIR21,VMP1,RPS6KB1 |
| SE_02_068800021 | chr17:62965386-62976427 |
11041 | 21 | 4 | 250 | 76 | 0 | 121 | 0 | TANC2,MIR633 |
| SE_02_068800146 | chr17:63771595-63780820 |
9225 | 146 | 2 | 289 | 827 | 0 | 41 | 368 | DDX42,CCDC47,PSMC5,STRADA,FTSJ3 |
| SE_02_068800244 | chr17:63834854-63850869 |
16015 | 244 | 6 | 356 | 1737 | 4 | 111 | 749 | SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3 |
| SE_02_068800113 | chr17:64503744-64508565 |
4821 | 113 | 2 | 235 | 83 | 3 | 71 | 433 | DDX5,CEP95,POLG2,MIR5047,MIR3064 |
| SE_02_068800186 | chr17:72120933-72183665 |
62732 | 186 | 19 | 1781 | 115 | 5 | 413 | 801 | SOX9,LOC101928205,SOX9-AS1 |
| SE_02_068800097 | chr17:77095738-77106345 |
10607 | 97 | 1 | 317 | 59 | 0 | 5 | 43 | SEC14L1,SCARNA16,MIR6516 |
| SE_02_068800014 | chr17:77126605-77217343 |
90738 | 14 | 24 | 2799 | 458 | 18 | 189 | 1768 | SEC14L1,MIR6516,SCARNA16 |
| SE_02_068800138 | chr17:81509705-81520757 |
11052 | 138 | 4 | 533 | 357 | 1 | 116 | 635 | ACTG1,FSCN2,FAAP100,NPLOC4 |
| SE_02_068800175 | chr18:26649995-26660046 |
10051 | 175 | 2 | 292 | 199 | 2 | 97 | 70 | KCTD1,PCAT18 |
| SE_02_068800234 | chr18:55892537-55895198 |
2661 | 234 | 2 | 79 | 12 | 0 | 8 | 0 | LINC01416 |
| SE_02_068800143 | chr18:57915641-57947594 |
31953 | 143 | 11 | 917 | 98 | 0 | 71 | 0 | NEDD4L |
| SE_02_068800215 | chr18:58838044-58874102 |
36058 | 215 | 7 | 894 | 28 | 5 | 198 | 563 | ZNF532 |
| SE_02_068800044 | chr18:63067614-63076409 |
8795 | 44 | 3 | 276 | 21 | 2 | 19 | 0 | BCL2 |
| SE_02_068800039 | chr18:63130243-63182927 |
52684 | 39 | 26 | 1392 | 38 | 8 | 211 | 0 | BCL2 |
| SE_02_068800201 | chr18:63313219-63323109 |
9890 | 201 | 5 | 219 | 38 | 0 | 82 | 319 | BCL2,KDSR |
| SE_02_068800211 | chr19:18279235-18292265 |
13030 | 211 | 2 | 339 | 305 | 1 | 99 | 707 | MIR3188,JUND,PDE4C,LSM4,PGPEP1,LOC729966,KIAA1683 |
| SE_02_068800111 | chr19:41262436-41267425 |
4989 | 111 | 2 | 107 | 29 | 0 | 64 | 511 | HNRNPUL1,AXL,CCDC97 |
| SE_02_068800045 | chr19:44577185-44615883 |
38698 | 45 | 15 | 1126 | 423 | 3 | 0 | 104 | IGSF23,MIR4531,CEACAM22P,CEACAM20,PVR |
| SE_02_068800192 | chr19:46600310-46604222 |
3912 | 192 | 2 | 95 | 17 | 0 | 56 | 454 | PPP5D1,CALM3,PTGIR,GNG8 |
| SE_02_068800034 | chr19:47095087-47114814 |
19727 | 34 | 4 | 563 | 36 | 1 | 167 | 324 | ZC3H4,TMEM160,SAE1 |
| SE_02_068800232 | chr2:130341832-130348734 |
6902 | 232 | 1 | 239 | 124 | 1 | 52 | 672 | CCDC115,IMP4,PTPN18 |
| SE_02_068800197 | chr2:177210725-177214784 |
4059 | 197 | 1 | 144 | 15 | 0 | 54 | 155 | HNRNPA3,MIR4444-2,MIR4444-1,MIR3128,NFE2L2 |
| SE_02_068800130 | chr2:189770569-189799167 |
28598 | 130 | 8 | 726 | 434 | 4 | 21 | 570 | PMS1,ORMDL1,OSGEPL1,OSGEPL1-AS1 |
| SE_02_068800145 | chr2:200861379-200865420 |
4041 | 145 | 1 | 121 | 47 | 0 | 6 | 229 | CLK1,RNU6-31P,PPIL3,BZW1,NIF3L1,LOC101927795 |
| SE_02_068800057 | chr2:204144386-204153532 |
9146 | 57 | 1 | 241 | 0 | 1 | 38 | 0 | ICOS |
| SE_02_068800048 | chr2:204224547-204241194 |
16647 | 48 | 7 | 424 | 12 | 0 | 162 | 0 | ICOS |
| SE_02_068800012 | chr2:204324743-204380683 |
55940 | 12 | 9 | 1578 | 7 | 4 | 349 | 0 | PARD3B |
| SE_02_068800084 | chr2:204543176-204576927 |
33751 | 84 | 8 | 907 | 2 | 1 | 114 | 201 | PARD3B |
| SE_02_068800114 | chr2:207163233-207167697 |
4464 | 114 | 2 | 120 | 27 | 0 | 109 | 382 | KLF7,MIR7845 |
| SE_02_068800074 | chr2:231705154-231711752 |
6598 | 74 | 1 | 274 | 67 | 1 | 117 | 748 | PTMA,MIR1244-2 |
| SE_02_068800223 | chr2:241313992-241318522 |
4530 | 223 | 1 | 0 | 205 | 0 | 31 | 493 | SEPT2,HDLBP,FARP2 |
| SE_02_068800066 | chr2:38346799-38378532 |
31733 | 66 | 5 | 1116 | 240 | 6 | 76 | 247 | ATL2 |
| SE_02_068800040 | chr2:38432104-38484412 |
52308 | 40 | 15 | 1669 | 541 | 2 | 101 | 0 | LOC101929596 |
| SE_02_068800216 | chr2:47327775-47347405 |
19630 | 216 | 3 | 680 | 72 | 0 | 12 | 65 | BCYRN1,LOC101927043,MIR559,EPCAM |
| SE_02_068800135 | chr2:55615360-55620167 |
4807 | 135 | 2 | 155 | 231 | 2 | 26 | 344 | PPP4R3B |
| SE_02_068800119 | chr2:69724575-69791361 |
66786 | 119 | 24 | 1817 | 1216 | 4 | 43 | 540 | ANXA4,GMCL1 |
| SE_02_068800083 | chr2:70070970-70090328 |
19358 | 83 | 3 | 624 | 267 | 0 | 130 | 800 | PCBP1-AS1,PCBP1,LOC100133985 |
| SE_02_068800131 | chr2:85536515-85542754 |
6239 | 131 | 5 | 210 | 197 | 1 | 90 | 742 | PARTICL,MAT2A,VAMP8,GGCX,VAMP5 |
| SE_02_068800217 | chr2:88015454-88025526 |
10072 | 217 | 4 | 361 | 103 | 2 | 0 | 0 | KRCC1,RGPD1,SMYD1 |
| SE_02_068800168 | chr20:1465417-1503739 |
38322 | 168 | 11 | 1146 | 486 | 3 | 19 | 1137 | SIRPB2,NSFL1C |
| SE_02_068800153 | chr20:17965050-17976533 |
11483 | 153 | 3 | 354 | 375 | 1 | 50 | 500 | SNX5,MGME1,SNORD17 |
| SE_02_068800140 | chr20:31587506-31613452 |
25946 | 140 | 11 | 806 | 1011 | 4 | 172 | 400 | MIR3193,ID1,COX4I2,MCTS2P,HM13-AS1 |
| SE_02_068800157 | chr20:47349873-47361521 |
11648 | 157 | 2 | 266 | 5 | 3 | 126 | 718 | ZMYND8,LOC100131496 |
| SE_02_068800149 | chr20:47560459-47592891 |
32432 | 149 | 11 | 766 | 88 | 2 | 21 | 43 | NCOA3 |
| SE_02_068800005 | chr20:57381982-57508831 |
126849 | 5 | 57 | 4241 | 570 | 39 | 139 | 1757 | CTCFL,RBM38,RAE1,MTRNR2L3 |
| SE_02_068800158 | chr21:33540498-33544334 |
3836 | 158 | 1 | 149 | 18 | 1 | 40 | 282 | GART,SON,DNAJC28,DONSON,MIR6501 |
| SE_02_068800155 | chr21:36243633-36263564 |
19931 | 155 | 7 | 671 | 139 | 3 | 101 | 756 | DOPEY2,MORC3 |
| SE_02_068800243 | chr21:37365129-37370131 |
5002 | 243 | 3 | 146 | 26 | 1 | 26 | 159 | DYRK1A |
| SE_02_068800156 | chr21:43303584-43327178 |
23594 | 156 | 10 | 847 | 29 | 1 | 10 | 0 | LINC00322,TCONS_00029157 |
| SE_02_068800247 | chr21:43342851-43383333 |
40482 | 247 | 8 | 1616 | 316 | 8 | 49 | 0 | TCONS_00029157,LINC00322 |
| SE_02_068800134 | chr22:29266552-29270987 |
4435 | 134 | 2 | 154 | 27 | 0 | 29 | 314 | RHBDD3,EWSR1,RASL10A,GAS2L1 |
| SE_02_068800010 | chr22:46052479-46083153 |
30674 | 10 | 1 | 848 | 204 | 4 | 265 | 685 | PRR34,PRR34-AS1,MIR3619,LINC00899,LOC730668,MIRLET7BHG,MIRLET7A3,MIR4763,MIRLET7B |
| SE_02_068800198 | chr3:120091294-120096844 |
5550 | 198 | 3 | 159 | 45 | 1 | 113 | 433 | GSK3B |
| SE_02_068800246 | chr3:134483730-134487908 |
4178 | 246 | 1 | 125 | 215 | 0 | 12 | 336 | CEP63,ANAPC13,MIR4788 |
| SE_02_068800245 | chr3:149963581-149972719 |
9138 | 245 | 3 | 272 | 75 | 2 | 149 | 639 | LOC646903,PFN2,TMEM183B |
| SE_02_068800159 | chr3:196995533-197041304 |
45771 | 159 | 18 | 1577 | 370 | 4 | 109 | 2697 | MFI2-AS1,MFI2,PIGZ |
| SE_02_068800030 | chr3:197144565-197186140 |
41575 | 30 | 13 | 1170 | 389 | 0 | 107 | 141 | DLG1 |
| SE_02_068800163 | chr3:20081488-20122530 |
41042 | 163 | 16 | 1070 | 435 | 4 | 44 | 296 | KAT2B,MIR3135A |
| SE_02_068800148 | chr4:55609408-55636904 |
27496 | 148 | 6 | 588 | 596 | 3 | 35 | 191 | NMU,PDCL2 |
| SE_02_068800052 | chr4:73574014-73621072 |
47058 | 52 | 22 | 1329 | 436 | 2 | 106 | 568 | RASSF6 |
| SE_02_068800238 | chr4:90127108-90145651 |
18543 | 238 | 9 | 433 | 28 | 0 | 61 | 160 | CCSER1 |
| SE_02_068800105 | chr5:124736163-124749976 |
13813 | 105 | 4 | 305 | 10 | 2 | 294 | 346 | ZNF608 |
| SE_02_068800042 | chr5:139633693-139711740 |
78047 | 42 | 43 | 1803 | 553 | 7 | 1065 | 572 | CXXC5,LOC101929696 |
| SE_02_068800037 | chr5:39048985-39079798 |
30813 | 37 | 11 | 829 | 202 | 2 | 88 | 198 | RICTOR |
| SE_02_068800069 | chr5:6044019-6072301 |
28282 | 69 | 7 | 769 | 29 | 2 | 42 | 0 | FLJ33360,MED10 |
| SE_02_068800189 | chr6:123801947-123811684 |
9737 | 189 | 5 | 259 | 0 | 0 | 54 | 140 | NKAIN2 |
| SE_02_068800063 | chr6:20559630-20631855 |
72225 | 63 | 19 | 2000 | 140 | 15 | 247 | 81 | CDKAL1 |
| SE_02_068800017 | chr6:21499993-21542678 |
42685 | 17 | 11 | 981 | 81 | 1 | 173 | 0 | LINC00581 |
| SE_02_068800041 | chr6:21583999-21610399 |
26400 | 41 | 8 | 643 | 29 | 1 | 254 | 811 | SOX4 |
| SE_02_068800183 | chr6:24718271-24722321 |
4050 | 183 | 2 | 112 | 70 | 1 | 79 | 93 | C6ORF62 |
| SE_02_068800242 | chr6:26053475-26066678 |
13203 | 242 | 2 | 419 | 422 | 6 | 28 | 178 | HIST1H1C,HFE,HIST1H2AB,HIST1H3C,HIST1H1A,HIST1H3A,HIST1H1T,HIST1H4B,HIST1H2BB,HIST1H4C,HIST1H3B,HIST1H4A |
| SE_02_068800233 | chr6:26118646-26127430 |
8784 | 233 | 5 | 321 | 651 | 13 | 52 | 227 | HIST1H2AC,HIST1H2BC,HFE,HIST1H2BD,HIST1H1E,HIST1H1T,HIST1H4C |
| SE_02_068800205 | chr6:26203123-26207463 |
4340 | 205 | 1 | 176 | 326 | 3 | 0 | 91 | HIST1H4E,HIST1H4G,HIST1H3E,HIST1H2BE,HIST1H4D,HIST1H2BG,HIST1H2BF,HIST1H2AE,HIST1H2BD,HIST1H4F,HIST1H1E,HIST1H1D,HIST1H2BH,HIST1H2AD,HIST1H3F |
| SE_02_068800227 | chr6:27890965-27903707 |
12742 | 227 | 3 | 389 | 771 | 7 | 33 | 317 | HIST1H2BO,HIST1H2AM,HIST1H2AL,HIST1H3I,HIST1H4L,HIST1H3J,OR2B2,HIST1H1B |
| SE_02_068800099 | chr6:3226112-3234130 |
8018 | 99 | 3 | 194 | 33 | 0 | 65 | 413 | TUBB2B,PSMG4,LOC100507194 |
| SE_02_068800102 | chr6:35808602-35857805 |
49203 | 102 | 20 | 1304 | 1141 | 7 | 60 | 753 | LHFPL5,SRPK1,CLPS,CLPSL2,CLPSL1 |
| SE_02_068800193 | chr6:36593145-36598579 |
5434 | 193 | 4 | 197 | 77 | 0 | 33 | 158 | SRSF3,STK38,MIR3925 |
| SE_02_068800167 | chr6:79304827-79314475 |
9648 | 167 | 2 | 335 | 38 | 1 | 4 | 721 | LCAL1 |
| SE_02_068800151 | chr6:93393426-93427211 |
33785 | 151 | 17 | 853 | 72 | 1 | 180 | 325 | EPHA7 |
| SE_02_068800162 | chr7:105010393-105018359 |
7966 | 162 | 4 | 231 | 33 | 0 | 101 | 718 | KMT2E,KMT2E-AS1,LINC01004 |
| SE_02_068800109 | chr7:10934482-10950517 |
16035 | 109 | 3 | 579 | 75 | 0 | 55 | 145 | NDUFA4,PHF14 |
| SE_02_068800219 | chr7:10973303-10984923 |
11620 | 219 | 6 | 345 | 44 | 1 | 75 | 321 | PHF14,NDUFA4 |
| SE_02_068800008 | chr7:11312662-11341899 |
29237 | 8 | 8 | 971 | 62 | 1 | 113 | 0 | PHF14 |
| SE_02_068800177 | chr7:12464740-12497708 |
32968 | 177 | 9 | 1198 | 878 | 2 | 47 | 0 | VWDE |
| SE_02_068800073 | chr7:137654280-137674467 |
20187 | 73 | 10 | 591 | 0 | 2 | 47 | 46 | DGKI |
| SE_02_068800024 | chr7:137714626-137778971 |
64345 | 24 | 18 | 1758 | 76 | 4 | 181 | 0 | DGKI |
| SE_02_068800117 | chr7:139358228-139362555 |
4327 | 117 | 2 | 138 | 116 | 0 | 39 | 227 | C7ORF55-LUC7L2,LUC7L2,C7ORF55 |
| SE_02_068800020 | chr7:141781890-141797457 |
15567 | 20 | 4 | 436 | 1063 | 1 | 8 | 187 | TAS2R5,SSBP1,TAS2R3,WEE2-AS1,TAS2R4,PRSS37 |
| SE_02_068800004 | chr7:141965476-141986108 |
20632 | 4 | 3 | 478 | 155 | 5 | 29 | 159 | TAS2R38,OR9A4,MGAM,CLEC5A |
| SE_02_068800100 | chr7:23463018-23477039 |
14021 | 100 | 4 | 316 | 95 | 1 | 133 | 262 | IGF2BP3,RPS2P32 |
| SE_02_068800169 | chr7:25721629-25744395 |
22766 | 169 | 10 | 717 | 98 | 0 | 134 | 0 | MIR148A |
| SE_02_068800179 | chr7:26196584-26204485 |
7901 | 179 | 4 | 361 | 41 | 0 | 89 | 501 | HNRNPA2B1,CBX3,NFE2L3 |
| SE_02_068800070 | chr7:29189435-29206887 |
17452 | 70 | 15 | 423 | 27 | 1 | 118 | 340 | CHN2,LOC102724484,CPVL |
| SE_02_068800009 | chr7:29224769-29320552 |
95783 | 9 | 50 | 2738 | 324 | 20 | 256 | 42 | CHN2,LOC102724484 |
| SE_02_068800206 | chr7:30593720-30597101 |
3381 | 206 | 1 | 100 | 53 | 0 | 18 | 181 | GARS,LOC401320 |
| SE_02_068800218 | chr7:32879193-32908389 |
29196 | 218 | 7 | 698 | 472 | 2 | 62 | 260 | KBTBD2,RP9P,FKBP9 |
| SE_02_068800152 | chr7:39012858-39017208 |
4350 | 152 | 2 | 111 | 11 | 0 | 4 | 131 | POU6F2,VPS41 |
| SE_02_068800072 | chr7:5419557-5440013 |
20456 | 72 | 4 | 703 | 45 | 0 | 255 | 846 | TNRC18 |
| SE_02_068800137 | chr7:8260294-8265689 |
5395 | 137 | 2 | 184 | 45 | 0 | 42 | 266 | LOC100505938,ICA1 |
| SE_02_068800251 | chr7:90593431-90613653 |
20222 | 251 | 9 | 518 | 237 | 2 | 119 | 229 | CDK14 |
| SE_02_068800132 | chr7:92807632-92837339 |
29707 | 132 | 9 | 630 | 44 | 1 | 204 | 445 | CDK6,LOC101927497 |
| SE_02_068800096 | chr7:93217524-93228020 |
10496 | 96 | 3 | 220 | 31 | 0 | 79 | 154 | HEPACAM2,VPS50 |
| SE_02_068800087 | chr8:100948275-100954345 |
6070 | 87 | 2 | 185 | 30 | 0 | 69 | 706 | YWHAZ |
| SE_02_068800222 | chr8:101096312-101137584 |
41272 | 222 | 11 | 1210 | 50 | 8 | 52 | 0 | FLJ42969 |
| SE_02_068800136 | chr8:101490658-101495481 |
4823 | 136 | 2 | 116 | 20 | 0 | 69 | 116 | GRHL2 |
| SE_02_068800200 | chr8:109131240-109136016 |
4776 | 200 | 2 | 113 | 7 | 0 | 10 | 0 | TRHR |
| SE_02_068800248 | chr8:114585781-114587988 |
2207 | 248 | 1 | 86 | 0 | 0 | 5 | 0 | |
| SE_02_068800237 | chr8:116872215-116875405 |
3190 | 237 | 1 | 88 | 16 | 0 | 30 | 233 | RAD21-AS1,RAD21,MIR3610 |
| SE_02_068800253 | chr8:119207869-119211014 |
3145 | 253 | 1 | 77 | 29 | 1 | 65 | 175 | MAL2 |
| SE_02_068800062 | chr8:123386359-123409294 |
22935 | 62 | 7 | 629 | 92 | 1 | 22 | 518 | ATAD2,WDYHV1,MIR548AA1,MIR548D1 |
| SE_02_068800150 | chr8:124275049-124281002 |
5953 | 150 | 3 | 173 | 42 | 0 | 12 | 0 | LOC101927588 |
| SE_02_068800053 | chr8:124471523-124476948 |
5425 | 53 | 3 | 126 | 48 | 1 | 12 | 319 | RNF139,RNF139-AS1,MIR6844,TRMT12 |
| SE_02_068800028 | chr8:124703466-124728871 |
25405 | 28 | 6 | 784 | 82 | 4 | 187 | 264 | MTSS1 |
| SE_02_068800090 | chr8:125422389-125435548 |
13159 | 90 | 4 | 346 | 4 | 2 | 215 | 568 | TRIB1 |
| SE_02_068800133 | chr8:126553618-126558491 |
4873 | 133 | 1 | 125 | 1 | 0 | 95 | 785 | FAM84B |
| SE_02_068800002 | chr8:126804847-126882614 |
77767 | 2 | 17 | 2202 | 103 | 9 | 163 | 0 | PCAT1 |
| SE_02_068800080 | chr8:127002168-127019346 |
17178 | 80 | 7 | 531 | 8 | 4 | 40 | 128 | PCAT1 |
| SE_02_068800036 | chr8:127734174-127752400 |
18226 | 36 | 2 | 521 | 7 | 2 | 111 | 655 | MYC,MIR1204,CASC11 |
| SE_02_068800112 | chr8:127788811-127826557 |
37746 | 112 | 12 | 1033 | 73 | 4 | 44 | 207 | MIR1204 |
| SE_02_068800202 | chr8:17921682-17925344 |
3662 | 202 | 1 | 190 | 108 | 1 | 24 | 195 | PCM1,FGL1 |
| SE_02_068800015 | chr8:52418089-52471600 |
53511 | 15 | 25 | 1566 | 240 | 2 | 107 | 0 | ST18 |
| SE_02_068800059 | chr8:72534103-72545445 |
11342 | 59 | 3 | 238 | 38 | 3 | 79 | 216 | KCNB2 |
| SE_02_068800058 | chr8:72563558-72648158 |
84600 | 58 | 25 | 2198 | 193 | 3 | 210 | 120 | KCNB2 |
| SE_02_068800088 | chr8:76673668-76688274 |
14606 | 88 | 7 | 332 | 22 | 0 | 337 | 205 | ZFHX4-AS1,ZFHX4 |
| SE_02_068800182 | chr9:1047332-1083711 |
36379 | 182 | 8 | 1530 | 137 | 5 | 132 | 673 | DMRT2,LINC01230 |
| SE_02_068800142 | chr9:120627796-120715654 |
87858 | 142 | 31 | 2159 | 1184 | 5 | 257 | 565 | MEGF9,CDK5RAP2 |
| SE_02_068800224 | chr9:32336362-32350802 |
14440 | 224 | 11 | 388 | 45 | 3 | 50 | 0 | ACO1 |
| SE_02_068800129 | chr9:3524386-3528767 |
4381 | 129 | 1 | 149 | 10 | 0 | 93 | 136 | RFX3 |
| SE_02_068800161 | chr9:70411928-70421549 |
9621 | 161 | 3 | 219 | 37 | 0 | 245 | 385 | KLF9 |
| SE_02_068800166 | chr9:72349307-72366341 |
17034 | 166 | 4 | 434 | 79 | 2 | 131 | 970 | ZFAND5,LINC01504 |
| SE_02_068800043 | chrX:115719101-115738952 |
19851 | 43 | 11 | 43 | 13 | 0 | 0 | 0 | PLS3,PLS3-AS1 |
| SE_02_068800013 | chrX:115843398-115889130 |
45732 | 13 | 21 | 31 | 0 | 0 | 0 | 0 | DANT2 |
| SE_02_068800078 | chrX:153970494-153974826 |
4332 | 78 | 2 | 74 | 81 | 1 | 81 | 436 | HCFC1,TMEM187,MIR3202-1,NAA10,IRAK1,ARHGAP4,MIR718,HCFC1-AS1,MIR3202-2,RENBP |
| SE_02_068800124 | chrX:15491557-15520800 |
29243 | 124 | 9 | 546 | 138 | 0 | 93 | 483 | BMX,PIR,PIR-FIGF |
| SE_02_068800239 | chrX:41083931-41088732 |
4801 | 239 | 1 | 96 | 14 | 0 | 76 | 228 | USP9X |
| SE_02_068800226 | chrX:56763697-56789295 |
25598 | 226 | 7 | 341 | 269 | 1 | 0 | 0 | LINC01420,UQCRBP1 |
SE annotation visualization
Information description of sample and annotation
| Case ID: | Name:GSM3165639 |
| Input ID: | Name:GSM3165640 |
| Common SNP: | dbSNP |
| eQTL: | GTEx, HaploReg v4.1, PancanQTL |
| Risk SNP : | GWAS Catalog, GWASdb v2.0 |
| TFBS: | TFBS Conserved of UCSC |
| CRISPR/Cas9 target site: | CRISPR Targets of UCSC |
Software and parameters used
| Read Mapping: | bowtie(v2.4.4) -p 10 -x -S -U |
| Peak Calling: | macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto |
| Stitching Distance: | 12.5 kb |
| TSS Exclusive Zone: | +/- 2 kb |