SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000108604
Gene: SMARCD2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr17:63832081-63843065 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_056300084 chr17:63829260-63842977 Sample_02_0563 Mammary gland MCF7L-P_0h 84 5 336 34 5 200 1684 PSMC5,SMARCD2,CSH2,GH2,TCAM1P,FTSJ3
SE_02_076500263 chr17:63829809-63849294 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 263 6 434 56 7 214 1678 PSMC5,SMARCD2,CSH2,CSH1,GH2,TCAM1P,FTSJ3
SE_02_046500398 chr17:63829829-63852844 Sample_02_0465 Adipose subcutaneous adipocytes 398 10 523 69 8 216 1677 PSMC5,SMARCD2,CSH2,CSH1,GH2,TCAM1P,FTSJ3
SE_02_118100312 chr17:63829999-63843893 Sample_02_1181 Brain GBM10 312 3 319 33 4 205 1645 PSMC5,SMARCD2,CSH2,GH2,TCAM1P,FTSJ3
SE_02_046600648 chr17:63830005-63849622 Sample_02_0466 Adipose visceral adipocytes 648 12 432 55 7 210 1642 PSMC5,SMARCD2,CSH2,CSH1,GH2,TCAM1P,FTSJ3
SE_02_039601985 chr17:63830281-63850151 Sample_02_0396 Skin NHEK-D 1985 5 444 59 7 205 1598 PSMC5,SMARCD2,CSH2,CSH1,TCAM1P,FTSJ3,GH2
SE_02_104200637 chr17:63830801-63849644 Sample_02_1042 Peripheral blood CD4+ cells_CTCL1137 637 6 419 57 7 199 1511 PSMC5,SMARCD2,CSH2,CSH1,GH2,TCAM1P,FTSJ3
SE_02_056400098 chr17:63830919-63842946 Sample_02_0564 Mammary gland MCF7L-P_E2_1h 98 4 286 30 3 176 1419 PSMC5,SMARCD2,CSH2,GH2,TCAM1P,FTSJ3
SE_02_109000325 chr17:63832178-63842880 Sample_02_1090 Mammary gland T47D_shCtrl_8hr 325 4 257 25 2 150 1178 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_02_112800356 chr17:63832626-63849298 Sample_02_1128 Adipose visceral adipose_CTL_HCTR10 356 6 375 49 5 157 1174 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3
SE_02_115100177 chr17:63832825-63850125 Sample_02_1151 Mammary gland MCF-7_UNTR 177 5 386 51 4 155 1144 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3
SE_02_085600367 chr17:63833155-63843597 Sample_02_0856 Glioblastoma Glioblastoma neurosphere cell_HF-3016 367 3 242 25 1 138 1077 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_02_085200325 chr17:63833303-63843778 Sample_02_0852 Mammary gland MCF7L-P 325 2 237 25 1 136 1043 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_02_115900324 chr17:63833303-63843778 Sample_02_1159 Mammary gland MCF7 324 2 237 25 1 136 1043 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_02_076400386 chr17:63833435-63844156 Sample_02_0764 Prostate LNCaP_DHT_DMSO_6h 386 3 243 26 1 134 1024 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_02_006300982 chr17:63834144-63843806 Sample_02_0063 Skin Keratinocytes 982 2 218 25 1 119 892 SMARCD2,PSMC5,CSH2,GH2,FTSJ3,TCAM1P
SE_02_120200483 chr17:63834173-63849576 Sample_02_1202 Brain GBM38 483 6 331 47 4 123 888 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3
SE_02_056800101 chr17:63834271-63842932 Sample_02_0568 Mammary gland MCF7L_E2_4h 101 4 202 23 1 102 796 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_02_062500162 chr17:63834286-63843892 Sample_02_0625 Mammary gland WS8_4OHT 162 2 217 25 1 113 868 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_02_095600375 chr17:63834305-63842921 Sample_02_0956 Brain IDH1_2658 375 2 201 23 1 99 780 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_02_040400408 chr17:63834330-63843987 Sample_02_0404 Mammary gland ZR-75-1_2 408 2 216 25 1 112 855 SMARCD2,PSMC5,CSH2,GH2,FTSJ3,TCAM1P
SE_02_108700351 chr17:63834332-63842966 Sample_02_1087 Mammary gland T47D_shCtrl_shRING1B_0 351 3 202 23 1 101 790 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_02_056600087 chr17:63834367-63842965 Sample_02_0566 Mammary gland MCF7L-P_E2_24h 87 2 201 23 1 100 783 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_02_109200487 chr17:63834389-63842941 Sample_02_1092 Mammary gland T47D_shCtrl_24hr 487 3 200 23 1 99 771 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_02_117300995 chr17:63834395-63849187 Sample_02_1173 Brain GBM01 995 5 320 46 4 112 843 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3
SE_02_077800120 chr17:63834400-63842850 Sample_02_0778 Mammary gland MCF7_FASR 120 2 198 23 1 98 743 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_02_128001338 chr17:63834406-63849232 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 1338 4 321 46 4 114 843 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3
SE_02_109300486 chr17:63834412-63842950 Sample_02_1093 Mammary gland T47D_shCtrl_shRING1B_24hr 486 4 200 23 1 99 770 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_01_010701285 chr17:63834416-63849341 Sample_01_0107 Esophagus esophagus squamous epithelium 1285 6 325 47 4 116 839 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3
SE_02_066700171 chr17:63834456-63843007 Sample_02_0667 Mammary gland MCF7_FA 171 2 201 23 1 104 769 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_02_120300735 chr17:63834458-63849304 Sample_02_1203 Brain NB1 735 5 322 47 4 116 824 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3
SE_02_056500075 chr17:63834485-63842870 Sample_02_0565 Mammary gland MCF7L-P_E2_16h 75 3 198 23 1 97 724 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_02_062600195 chr17:63834489-63844001 Sample_02_0626 Mammary gland WS8_E2 195 3 215 25 1 111 819 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_02_108600291 chr17:63834508-63842948 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 291 3 199 23 1 97 746 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_02_062700160 chr17:63834539-63843821 Sample_02_0627 Mammary gland WS8_VEH 160 2 213 25 1 108 811 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_02_080900413 chr17:63834573-63842993 Sample_02_0809 Mammary gland T47D Serum 413 2 200 23 1 97 736 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_02_109100283 chr17:63834586-63842892 Sample_02_1091 Mammary gland T47D_shCtrl_shRING1B_8hr 283 2 197 23 1 94 708 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_02_062400346 chr17:63834595-63844094 Sample_02_0624 Mammary gland TAMR_VEH 346 2 215 26 1 107 792 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_02_119300760 chr17:63834598-63843994 Sample_02_1193 Brain GBM27 760 3 212 25 1 107 792 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_02_157800313 chr17:63834601-63849182 Sample_02_1578 Mammary gland MCF7_DAC+455 313 5 316 46 4 107 792 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3
SE_02_056700223 chr17:63834606-63842820 Sample_02_0567 Mammary gland MCF7L-P_TAMR 223 4 195 23 1 93 685 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_02_121300879 chr17:63834645-63849213 Sample_02_1213 Brain GBM31 879 5 315 46 4 107 781 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3
SE_00_005500943 chr17:63834649-63849253 Sample_00_0055 Spleen spleen 34y 943 7 316 46 4 111 780 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3,RP11-51F16.8,DDX42
SE_02_119600766 chr17:63834667-63849176 Sample_02_1196 Brain GBM32 766 4 314 46 4 107 776 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3
SE_02_119700639 chr17:63834705-63849266 Sample_02_1197 Brain GBM33 639 5 316 47 4 111 766 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3
SE_02_066400459 chr17:63834805-63843080 Sample_02_0664 Prostate LNCaP_DMSO 459 3 195 23 1 100 712 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_02_068800244 chr17:63834854-63850869 Sample_02_0688 Lung NCI-H211_no infection 244 6 356 57 4 111 749 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3
SE_02_112900552 chr17:63834991-63849220 Sample_02_1129 Adipose visceral adipose_CTL_HCTR13 552 5 305 45 4 106 720 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3
SE_02_119801035 chr17:63835057-63842883 Sample_02_1198 Brain GBM34 1035 3 182 21 0 92 627 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_02_120400841 chr17:63835196-63849539 Sample_02_1204 Brain NB2 841 3 302 44 3 111 720 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3
SE_02_148001023 chr17:63835207-63842927 Sample_02_1480 Bone MHH-ES-1 1023 2 175 20 0 93 638 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_01_010101411 chr17:63835346-63849291 Sample_01_0101 Pancreas pancreas_54y 1411 3 297 44 3 110 702 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3
SE_02_062300385 chr17:63835399-63844102 Sample_02_0623 Mammary gland TAMR_E2 385 2 193 23 0 106 690 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_02_088901352 chr17:63836466-63844480 Sample_02_0889 Heart left ventricle_LV1183 1352 1 173 19 0 96 632 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_02_009600200 chr17:63836629-63844130 Sample_02_0096 Mammary gland ZR-75-1_1 200 1 162 17 0 96 632 SMARCD2,PSMC5,CSH2,GH2,FTSJ3,TCAM1P
SE_02_000200307 chr17:63836646-63844407 Sample_02_0002 Mammary gland MCF-7_10Gygamma_2.5h 307 1 168 18 0 96 632 SMARCD2,PSMC5,CSH2,GH2,FTSJ3,TCAM1P
SE_02_061100016 chr17:63836774-63844192 Sample_02_0611 Liposarcoma DDLPS_T1 16 1 163 17 0 96 628 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_00_004600976 chr17:63836816-63849195 Sample_00_0046 Heart right ventricle_34y 976 6 260 37 3 96 624 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3
SE_02_011500179 chr17:63836846-63843903 Sample_02_0115 Mammary gland MCF-7 179 1 153 16 0 96 616 SMARCD2,PSMC5,CSH2,GH2,FTSJ3,TCAM1P,CCDC47,DDX42,PSC5,SARCD2,STRADA
SE_02_097100644 chr17:63836872-63849424 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 644 3 264 38 3 100 606 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3
SE_02_118700845 chr17:63836978-63849222 Sample_02_1187 Brain GBM16 845 3 256 37 3 94 590 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3
SE_02_140700505 chr17:63837123-63843038 Sample_02_1407 Prostate LNCaP_R1881 4h 505 1 136 14 0 88 523 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_02_101300659 chr17:63837243-63849098 Sample_02_1013 Brain Lateral temporal lobe_6T_AD 659 5 252 37 3 90 543 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3
SE_02_067300390 chr17:63837256-63842900 Sample_02_0673 Prostate LNCAP_FA 390 1 133 14 0 77 452 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_01_002200104 chr17:63837276-63843913 Sample_01_0022 Prostate C4-2B 104 3 146 16 0 90 537 SMARCD2,PSMC5,CSH2,GH2,FTSJ3,TCAM1P
SE_02_121100695 chr17:63837355-63843540 Sample_02_1211 Brain GBM21 695 2 140 16 0 90 519 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_02_103501579 chr17:63837423-63849556 Sample_02_1035 Mammary gland HCC70_Vehicle 1579 5 256 38 3 95 511 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3
SE_02_112500308 chr17:63837570-63849098 Sample_02_1125 Adipose visceral adipose_CS_VC06 308 4 248 37 3 81 476 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3
SE_02_066100661 chr17:63837571-63842732 Sample_02_0661 Mammary gland MCF10DCIS-TetTCF7 661 3 125 14 0 66 352 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_02_016200369 chr17:63837656-63842777 Sample_02_0162 Prostate C4-2B_vehicle_24h 369 2 125 14 0 62 331 SMARCD2,PSMC5,CSH2,GH2,FTSJ3,TCAM1P
SE_02_103601337 chr17:63837676-63851715 Sample_02_1036 Mammary gland HCC70_XY018 1337 5 310 48 3 82 443 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3
SE_02_142400387 chr17:63837685-63850043 Sample_02_1424 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_4h 387 3 266 41 3 80 441 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3,TACO1,DDX42,CEP95
SE_02_051100711 chr17:63838026-63843015 Sample_02_0511 Prostate LNCaP95_shARv7_ETOH 711 2 118 13 0 58 360 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_02_036200715 chr17:63838045-63849556 Sample_02_0362 Haematopoietic and lymphoid tissue REH 715 2 243 37 3 71 413 SMARCD2,CSH2,CSH1,PSMC5,TCAM1P,FTSJ3,GH2
SE_02_155700195 chr17:63838349-63851040 Sample_02_1557 Gastrointestinal Stromal GIST-6_KIT e11/16 195 6 274 47 3 71 413 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3
SE_02_146001335 chr17:63838672-63849684 Sample_02_1460 Blood Mutz-3 1335 3 228 39 3 62 355 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3
SE_02_077501913 chr17:63838693-63851026 Sample_02_0775 Pancreas EndoC-BH1_SE 1913 4 264 47 3 62 348 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3
SE_02_113000806 chr17:63839082-63850869 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 806 3 252 45 3 53 300 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3,TACO1,DDX42,CEP95
SE_01_011200463 chr17:63839187-63842923 Sample_01_0112 Embryonic kidney HEK293_encode 463 2 85 11 0 34 218 SMARCD2,CSH2,PSMC5,GH2,TCAM1P,FTSJ3
SE_02_111400313 chr17:63839380-63849319 Sample_02_1114 Embryonic kidney HEK293 313 4 203 35 3 50 300 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3,DDX42
SE_02_111600548 chr17:63839440-63853007 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 548 4 293 48 4 50 300 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3,TACO1,DDX42,CEP95
SE_04_000101093 chr17:63839509-63853038 Sample_04_0001 Blood heat shocked K562 1093 4 293 48 4 49 300 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3,TACO1,DDX42,CEP95
SE_02_109900684 chr17:63839647-63852826 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 684 6 284 46 4 48 300 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3,TACO1,DDX42,CEP95
SE_02_054501090 chr17:63840944-63851302 Sample_02_0545 Bone marrow K562 WT 1090 2 214 36 3 43 300 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3,TACO1,DDX42,CEP95
Genomic distribution of SEs associated with SMARCD2
Genome Browser

The strength of the tissue affected by the gene

Expression of SMARCD2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)