SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000075461
Gene: CACNG4 Gene type: protein_coding
Strand: + External links:
Genomic region: chr17:66964707-67033398 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_095800381 chr17:66673102-66735334 Sample_02_0958 Brain H3.3K27M_Tumor_BT245-X0-2-Rx_xenograft 381 22 1808 59 9 100 234 PRKCA,MIR634,CACNG4
SE_02_118000193 chr17:66673231-66732832 Sample_02_1180 Brain GBM09 193 17 1721 54 9 100 212 PRKCA,MIR634,CACNG4
SE_02_070900364 chr17:66673252-66713206 Sample_02_0709 Pancreas hT85_organoid 364 10 1152 31 4 83 165 PRKCA,MIR634,CACNG4
SE_02_097200684 chr17:66705013-66748200 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 684 8 1298 39 11 71 326 PRKCA,MIR634,CACNG4
SE_02_077501261 chr17:66798213-66839393 Sample_02_0775 Pancreas EndoC-BH1_SE 1261 9 1231 29 4 110 1195 PRKCA,CACNG5,MIR634,CACNG4
SE_01_002100743 chr17:66828076-66841266 Sample_01_0021 Skin bipolar-neuron 743 3 387 13 1 24 173 CACNG5,MIR634,CACNG4
SE_02_108200743 chr17:66828918-66862657 Sample_02_1082 Retina retina 743 11 996 41 7 58 173 CACNG5,MIR634,CACNG4
SE_02_054200047 chr17:66898532-67068991 Sample_02_0542 Brain Kelly_ResJQ1 47 61 5140 187 18 450 1593 CACNG4,CACNG1,CACNG5
SE_02_115100014 chr17:66902624-67059741 Sample_02_1151 Mammary gland MCF-7_UNTR 14 67 4718 166 18 446 1593 CACNG4,CACNG1,CACNG5
SE_02_110300141 chr17:66903650-67066138 Sample_02_1103 Brain NB-1643 141 56 4907 168 18 446 1593 CACNG4,CACNG1,CACNG5
SE_02_031200080 chr17:66903680-67028016 Sample_02_0312 Neuroblastoma SK-N-BE_2-C 80 15 3720 131 10 358 364 CACNG4,CACNG5,CACNG1
SE_02_110000032 chr17:66903834-67089129 Sample_02_1100 Brain COG-N-415 32 75 5475 195 18 520 2325 HELZ,CACNG4,CACNG1,CACNG5
SE_02_149900048 chr17:66904370-67000299 Sample_02_1499 Brain BE_2_-C 48 25 2833 119 8 290 166 CACNG4,CACNG5,CACNG1
SE_02_030000119 chr17:66919357-66988386 Sample_02_0300 Neuroblastoma CLB-PE 119 13 2013 98 4 241 166 CACNG4,CACNG5
SE_02_031400635 chr17:66919420-66958943 Sample_02_0314 Neuroblastoma SK-N-FI 635 6 1192 67 3 91 0 CACNG5,CACNG4
SE_02_033800169 chr17:66920156-66972645 Sample_02_0338 Neuroblastoma BE2 169 6 1529 84 3 207 166 CACNG4,CACNG5
SE_02_054400095 chr17:66929652-66996936 Sample_02_0544 Brain Kelly_ResVeh 95 25 1995 109 3 243 166 CACNG4,CACNG1
SE_02_108900147 chr17:66930500-66966977 Sample_02_1089 Mammary gland T47D_shCtrl_shRING1B_45min 147 13 1085 74 2 164 166 CACNG4
SE_02_056500023 chr17:66930705-66969779 Sample_02_0565 Mammary gland MCF7L-P_E2_16h 23 14 1136 75 2 186 166 CACNG4
SE_02_056400022 chr17:66930797-66973696 Sample_02_0564 Mammary gland MCF7L-P_E2_1h 22 16 1250 83 2 195 166 CACNG4
SE_02_056800034 chr17:66930864-66973853 Sample_02_0568 Mammary gland MCF7L_E2_4h 34 13 1252 84 2 195 166 CACNG4
SE_02_109300306 chr17:66930865-66959159 Sample_02_1093 Mammary gland T47D_shCtrl_shRING1B_24hr 306 11 870 65 2 73 0 CACNG4
SE_02_021600916 chr17:66930902-66960021 Sample_02_0216 Skin NHEK_scramble 916 5 903 69 2 76 0 CACNG4
SE_02_029700056 chr17:66930916-67023449 Sample_02_0297 Neuroblastoma CLB-CAR 56 12 2755 120 4 313 244 CACNG4,CACNG1
SE_02_125300216 chr17:66930943-66978776 Sample_02_1253 Mammary gland CAMA1 ER+/FGFR1-amplified 216 16 1374 92 3 208 166 CACNG4
SE_02_052700051 chr17:66930947-66969507 Sample_02_0527 Mammary gland MCF7_WT 51 18 1124 74 2 186 166 CACNG4,CACNG1,CACNG5
SE_02_123400308 chr17:66930949-66959290 Sample_02_1234 Mammary gland T47D_Full 308 10 876 66 2 73 0 CACNG4
SE_02_110800039 chr17:66930963-67069033 Sample_02_1108 Brain SK-N-BE_2_-C 39 61 4209 166 13 407 1593 CACNG4,CACNG1
SE_02_029600197 chr17:66931053-66996370 Sample_02_0296 Neuroblastoma CLB-BER-Lud 197 9 1943 108 3 239 166 CACNG4,CACNG1
SE_02_042100455 chr17:66931286-66995706 Sample_02_0421 Brain BE2C_3 455 11 1926 108 3 234 166 CACNG4,CACNG1
SE_02_025100024 chr17:66931316-66996573 Sample_02_0251 Autonomic ganglia SH-SY5Y-MYCN-OFF 24 10 1950 108 3 235 166 CACNG4,CACNG1
SE_02_030600065 chr17:66931379-66997430 Sample_02_0306 Autonomic ganglia SH-SY5Y 65 11 1967 110 3 239 166 CACNG4,CACNG1
SE_02_030800251 chr17:66931723-66973062 Sample_02_0308 Neuroblastoma SJNB1 251 6 1207 82 2 185 166 CACNG4
SE_02_115900131 chr17:66931908-66978775 Sample_02_1159 Mammary gland MCF7 131 16 1348 91 3 202 166 CACNG4,CACNG1,CACNG5
SE_02_085200132 chr17:66931909-66978775 Sample_02_0852 Mammary gland MCF7L-P 132 16 1348 91 3 202 166 CACNG4
SE_02_110200036 chr17:66931916-67069049 Sample_02_1102 Brain LA-N-5 36 68 4182 165 13 402 1593 CACNG4,CACNG1
SE_02_024600113 chr17:66932565-66967260 Sample_02_0246 Mammary gland MCF-7_estradiol 113 5 1035 73 1 168 166 CACNG4
SE_02_108800193 chr17:66932636-66959518 Sample_02_1088 Mammary gland T47D_shCtrl_45min 193 14 837 65 1 68 0 CACNG4
SE_02_062300053 chr17:66932820-66967357 Sample_02_0623 Mammary gland TAMR_E2 53 7 1037 73 1 173 166 CACNG4
SE_02_052600067 chr17:66933097-66969748 Sample_02_0526 Mammary gland MCF7 TRPS1 KO 67 13 1069 73 1 181 166 CACNG4,CACNG1,CACNG5
SE_02_109200330 chr17:66933750-66959412 Sample_02_1092 Mammary gland T47D_shCtrl_24hr 330 8 802 65 1 60 0 CACNG4
SE_02_062400087 chr17:66933783-66967132 Sample_02_0624 Mammary gland TAMR_VEH 87 7 1000 73 1 151 166 CACNG4
SE_02_155600114 chr17:66939401-66988127 Sample_02_1556 Gastrointestinal Stromal GIST-5_KIT e9 114 17 1408 83 2 206 166 CACNG4
SE_02_000200033 chr17:66941155-66970523 Sample_02_0002 Mammary gland MCF-7_10Gygamma_2.5h 33 1 838 57 1 171 166 CACNG4
SE_02_156001425 chr17:66941238-66972810 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 1425 9 902 63 1 173 166 CACNG4
SE_02_009600226 chr17:66941316-66979246 Sample_02_0096 Mammary gland ZR-75-1_1 226 5 1075 74 2 193 166 CACNG4
SE_01_004600070 chr17:66941565-66967397 Sample_01_0046 Mammary gland MCF-7 70 4 755 54 1 161 166 CACNG4
SE_02_036300429 chr17:66941586-66956554 Sample_02_0363 Haematopoietic and lymphoid tissue 697 429 4 467 41 1 49 0 CACNG4
SE_02_157500030 chr17:66941874-66967044 Sample_02_1575 Mammary gland MCF7_Mock 30 10 738 54 1 147 166 CACNG4,CACNG1,CACNG5
SE_02_056300040 chr17:66941907-66980100 Sample_02_0563 Mammary gland MCF7L-P_0h 40 11 1090 74 2 199 166 CACNG4
SE_00_005300442 chr17:66941925-66972493 Sample_00_0053 Embryo trophoblast cell originated from H1 442 11 873 61 1 173 166 CACNG4
SE_02_056600040 chr17:66941952-66977103 Sample_02_0566 Mammary gland MCF7L-P_E2_24h 40 11 982 69 2 182 166 CACNG4
SE_02_157800038 chr17:66941977-66969619 Sample_02_1578 Mammary gland MCF7_DAC+455 38 8 787 54 1 169 166 CACNG4,CACNG1,CACNG5
SE_02_066700018 chr17:66941998-66967480 Sample_02_0667 Mammary gland MCF7_FA 18 10 747 54 1 161 166 CACNG4,CACNG1,CACNG5
SE_02_085300254 chr17:66942009-66967301 Sample_02_0853 Mammary gland MCF7L-TamR 254 8 738 54 1 158 166 CACNG4
SE_02_108600554 chr17:66942015-66958828 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 554 4 515 44 1 56 0 CACNG4
SE_02_157700042 chr17:66942016-66967096 Sample_02_1577 Mammary gland MCF7_DAC 42 12 734 54 1 147 166 CACNG4,CACNG1,CACNG5
SE_02_113200450 chr17:66942021-66959008 Sample_02_1132 Pancreas KLM1 wt 450 10 522 44 1 56 0 CACNG4
SE_02_157600025 chr17:66942281-66967461 Sample_02_1576 Mammary gland MCF7_CPI-455 25 11 734 53 1 161 166 CACNG4,CACNG1,CACNG5
SE_02_096300417 chr17:66943251-66968228 Sample_02_0963 Brain H3.3K27M_Tumor-derived cell-line_G477p6_cells 417 4 726 46 1 161 166 CACNG4
SE_02_076600385 chr17:66943370-66980761 Sample_02_0766 Ovary PEO1 385 14 1068 67 2 201 166 CACNG4
SE_02_143400747 chr17:66943463-66958896 Sample_02_1434 Trophoblast trophoblast stem cells 747 3 475 35 1 54 0 CACNG4
SE_02_143500781 chr17:66943554-66958851 Sample_02_1435 Trophoblast trophoblast stem cells_MSX2_KD 781 5 472 35 1 54 0 CACNG4
SE_02_062700111 chr17:66943640-66962885 Sample_02_0627 Mammary gland WS8_VEH 111 6 605 40 1 65 0 CACNG4
SE_02_107700050 chr17:66943746-66975382 Sample_02_1077 Mammary gland MCF7_TET2KO-E2 50 7 890 53 2 177 166 CACNG4,CACNG1,CACNG5
SE_02_118400405 chr17:66943774-66993463 Sample_02_1184 Brain GBM13 405 20 1456 75 2 213 166 CACNG4
SE_02_117800156 chr17:66943775-66995400 Sample_02_1178 Brain GBM07 156 12 1520 77 2 219 166 CACNG4,CACNG1
SE_02_080100346 chr17:66943832-66953717 Sample_02_0801 Brain 2235 346 4 320 24 1 41 0 CACNG4
SE_02_095800576 chr17:66943868-66996470 Sample_02_0958 Brain H3.3K27M_Tumor_BT245-X0-2-Rx_xenograft 576 17 1556 76 2 220 166 CACNG4,CACNG1
SE_02_095300294 chr17:66943876-66989741 Sample_02_0953 Brain H3.3K27M_1840 294 16 1327 69 2 204 166 CACNG4
SE_02_096700590 chr17:66943916-66986450 Sample_02_0967 Brain H3.3K27M_JN57 590 9 1238 63 2 204 166 CACNG4
SE_02_103200505 chr17:66943957-66980042 Sample_02_1032 Head and neck SCC1 JQ1 505 13 1027 61 2 196 166 CACNG4
SE_02_062600067 chr17:66944009-66966910 Sample_02_0626 Mammary gland WS8_E2 67 5 669 40 1 142 166 CACNG4
SE_02_117900338 chr17:66944060-66995772 Sample_02_1179 Brain GBM08 338 12 1525 74 2 219 166 CACNG4,CACNG1
SE_02_097100045 chr17:66944087-67027455 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 45 29 2511 88 4 297 364 CACNG4,CACNG1
SE_02_077700181 chr17:66944132-66954527 Sample_02_0777 Mammary gland MCF7_TAMR 181 3 322 21 1 45 0 CACNG4
SE_02_103100574 chr17:66944134-66981040 Sample_02_1031 Head and neck SCC1 contol 574 12 1044 60 2 201 166 CACNG4
SE_02_041700216 chr17:66944166-66953310 Sample_02_0417 Embryo H9_Null 216 3 291 21 1 39 0 CACNG4
SE_02_107600312 chr17:66944218-66954598 Sample_02_1076 Mammary gland MCF7_TET2WT-E2 312 6 322 21 1 45 0 CACNG4
SE_02_062500071 chr17:66944228-66967058 Sample_02_0625 Mammary gland WS8_4OHT 71 6 660 39 1 145 166 CACNG4
SE_02_109000407 chr17:66944268-66958829 Sample_02_1090 Mammary gland T47D_shCtrl_8hr 407 4 439 29 1 54 0 CACNG4
SE_02_097900514 chr17:66944352-66986477 Sample_02_0979 Brain JN14-BS1_H3.3K27M 514 15 1217 60 2 204 166 CACNG4
SE_02_077800081 chr17:66944417-66954765 Sample_02_0778 Mammary gland MCF7_FASR 81 3 317 21 1 47 0 CACNG4
SE_02_096200419 chr17:66944739-66995772 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 419 12 1491 73 2 215 166 CACNG4,CACNG1
SE_02_005200043 chr17:66945768-66967054 Sample_02_0052 Mammary gland MCF-7_E2 43 4 605 37 1 134 166 CACNG4
SE_02_005100060 chr17:66945831-66966961 Sample_02_0051 Mammary gland MCF-7_EtOH 60 4 599 37 1 134 166 CACNG4
SE_02_016600599 chr17:66946974-66954727 Sample_02_0166 Mammary gland HCC1954_Parental 599 1 233 18 1 34 0 CACNG4
SE_02_016700453 chr17:66946974-66954727 Sample_02_0167 Mammary gland HCC1954_LCC2 453 1 233 18 1 34 0 CACNG4
SE_02_136000991 chr17:66947096-66955160 Sample_02_1360 Bladder UMUC1_sonic_pSIN-puro_EV 991 4 241 20 1 34 0 CACNG4
SE_01_011300080 chr17:66947180-66958697 Sample_01_0113 Mammary gland MCF-7 80 6 343 26 1 41 0 CACNG4
SE_02_056700286 chr17:66947384-66958801 Sample_02_0567 Mammary gland MCF7L-P_TAMR 286 4 335 26 1 41 0 CACNG4
SE_02_049201008 chr17:66947430-66956373 Sample_02_0492 Pharyng Detroit 562_LPS 1008 5 268 22 1 34 0 CACNG4
SE_02_049100879 chr17:66947526-66958701 Sample_02_0491 Pharyng Detroit 562-Control 879 5 326 25 1 41 0 CACNG4
SE_02_136101092 chr17:66948451-66954578 Sample_02_1361 Bladder UMUC1_sonic_pSIN-puro_WTUTX 1092 4 174 13 1 25 0 CACNG4
SE_02_074800839 chr17:66949313-66954328 Sample_02_0748 Mammary gland HCC1599_WO 839 1 147 9 1 24 0 CACNG4
SE_02_011500149 chr17:66949654-66966932 Sample_02_0115 Mammary gland MCF-7 149 2 476 27 1 119 166 CACNG4
SE_02_032800506 chr17:66950053-66954920 Sample_02_0328 Embryo H9_naive 506 1 133 9 0 18 0 CACNG4
SE_02_007600063 chr17:66950358-66995659 Sample_02_0076 Autonomic ganglia SH-SY5Y_DMSO_3h 63 13 1305 58 1 185 166 CACNG4,CACNG1
SE_02_109100435 chr17:66950524-66958786 Sample_02_1091 Mammary gland T47D_shCtrl_shRING1B_8hr 435 3 229 14 0 18 0 CACNG4
SE_02_049600276 chr17:66950652-66953646 Sample_02_0496 Mammary gland C49R 276 1 86 6 0 5 0 CACNG4
SE_02_020000115 chr17:66950791-66953591 Sample_02_0200 Stomach RERF-GC-1B 115 1 78 6 0 5 0 CACNG4
SE_01_011100030 chr17:66951694-67035273 Sample_01_0111 Brain SK-N-SH 30 32 2482 75 4 300 1019 CACNG4,CACNG1
SE_02_034000033 chr17:66952283-66995736 Sample_02_0340 Brain BE2C_2 33 6 1245 53 1 182 166 CACNG4,CACNG1
SE_02_029800094 chr17:66952351-66996369 Sample_02_0298 Neuroblastoma CLB-GA 94 7 1260 53 1 183 166 CACNG4,CACNG1
SE_02_106300215 chr17:66952605-66989136 Sample_02_1063 Brain CLB-GA-control 215 9 1015 42 1 167 166 CACNG4
SE_02_096100503 chr17:66953160-66967801 Sample_02_0961 Brain H3.3K27M_Tumor-derived cell-line_DIPGVI_c27_cells 503 3 393 18 0 123 166 CACNG4
SE_02_106400233 chr17:66953211-66988990 Sample_02_1064 Brain CLB-GA-Dinaciclib_8h 233 10 999 42 1 167 166 CACNG4
SE_02_095500400 chr17:66953212-66984132 Sample_02_0955 Brain IDH1_2469 400 8 862 39 1 167 166 CACNG4
SE_02_110400026 chr17:66957688-67032831 Sample_02_1104 Brain NB-69 26 28 2248 66 3 283 819 CACNG4,CACNG1
SE_02_150000169 chr17:66958409-66995821 Sample_02_1500 Brain KELLY_untreat 169 14 1088 46 1 165 166 CACNG4,CACNG1
SE_02_077500100 chr17:66958744-66997970 Sample_02_0775 Pancreas EndoC-BH1_SE 100 12 1138 46 1 170 166 CACNG4,CACNG1
SE_02_007500328 chr17:66968688-66988904 Sample_02_0075 Autonomic ganglia kelly_DMSO_3h 328 4 591 24 1 39 0 CACNG4
Genomic distribution of SEs associated with CACNG4
Genome Browser

The strength of the tissue affected by the gene

Expression of CACNG4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)