SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000206630
Gene: SNORD60 Gene type: snoRNA
Strand: - External links:
Genomic region: chr16:2155023-2155105 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_025200163 chr16:2145413-2160469 Sample_02_0252 Neuroblastoma IMR5-75-shMYCN-MYCN_high 163 1 492 24 0 75 1210 TRAF7,SNORD60,RAB26,CASKIN1,MIR3180-5,MLST8,PKD1
SE_02_031200663 chr16:2145694-2163495 Sample_02_0312 Neuroblastoma SK-N-BE_2-C 663 1 578 27 0 77 1210 TRAF7,SNORD60,RAB26,CASKIN1,MIR3180-5,MLST8,PKD1,C16ORF79
SE_02_028400212 chr16:2146290-2164389 Sample_02_0284 Pelvis patient 119 212 1 639 28 0 84 1332 TRAF7,SNORD60,RAB26,CASKIN1,MIR3180-5,MLST8,PKD1,C16ORF79
SE_02_000200250 chr16:2146488-2158650 Sample_02_0002 Mammary gland MCF-7_10Gygamma_2.5h 250 1 398 13 0 72 1210 TRAF7,SNORD60,RAB26,CASKIN1,MIR3180-5,MLST8,PKD1
SE_02_085200198 chr16:2146513-2158928 Sample_02_0852 Mammary gland MCF7L-P 198 1 416 14 0 72 1210 RAB26,SNHG19,TRAF7,SNORD60,CASKIN1,MIR6511B1,MLST8,MIR3180-5,MIR4516,PKD1,MIR6511B2
SE_02_115900195 chr16:2146513-2158928 Sample_02_1159 Mammary gland MCF7 195 1 416 14 0 72 1210 RAB26,SNHG19,TRAF7,SNORD60,CASKIN1,MIR6511B1,MLST8,MIR3180-5,MIR4516,PKD1,MIR6511B2
SE_02_040400235 chr16:2146739-2157612 Sample_02_0404 Mammary gland ZR-75-1_2 235 1 363 13 0 67 1210 TRAF7,SNORD60,RAB26,CASKIN1,MIR3180-5,MLST8,PKD1
SE_02_016800517 chr16:2147009-2157174 Sample_02_0168 Prostate LNCaP 517 1 331 13 0 65 1210 TRAF7,SNORD60,RAB26,CASKIN1,MIR3180-5,MLST8,PKD1
SE_00_001400645 chr16:2147022-2162820 Sample_00_0014 Heart left ventricle heart-left-ventricle 645 2 518 22 0 69 1210 TRAF7,SNORD60,RAB26,CASKIN1,MIR3180-5,MLST8,PKD1,C16ORF79
SE_02_040300276 chr16:2147227-2158218 Sample_02_0403 Mammary gland T-47D_untreat 276 1 372 13 0 66 1210 TRAF7,SNORD60,RAB26,CASKIN1,MIR3180-5,MLST8,PKD1
SE_00_004200621 chr16:2147242-2160343 Sample_00_0042 Stomach stomach_30y 621 2 443 15 0 69 1210 TRAF7,SNORD60,RAB26,CASKIN1,MIR3180-5,MLST8,PKD1
SE_01_001200151 chr16:2147279-2162119 Sample_01_0012 Lung A549_dexamethasone_1h 151 1 492 21 0 69 1210 TRAF7,SNORD60,RAB26,CASKIN1,MIR3180-5,MLST8,PKD1,C16ORF79
SE_02_017900448 chr16:2147360-2159820 Sample_02_0179 Urinary bladder T24 448 1 426 15 0 69 1210 TRAF7,SNORD60,RAB26,CASKIN1,MIR3180-5,MLST8,PKD1
SE_02_040100422 chr16:2147478-2158439 Sample_02_0401 Mammary gland SUM159PT-T47D 422 1 371 13 0 66 1210 TRAF7,SNORD60,RAB26,CASKIN1,MIR3180-5,MLST8,PKD1
SE_02_030500587 chr16:2147514-2160287 Sample_02_0305 Neuroblastoma SH-EP 587 1 432 15 0 69 1210 TRAF7,SNORD60,RAB26,CASKIN1,MIR3180-5,MLST8,PKD1
SE_02_062600267 chr16:2147538-2157326 Sample_02_0626 Mammary gland WS8_E2 267 1 327 13 0 66 1210 RAB26,SNHG19,TRAF7,SNORD60,CASKIN1,MIR6511B1,MLST8,MIR3180-5,MIR4516,PKD1,MIR6511B2
SE_02_062500287 chr16:2147548-2157562 Sample_02_0625 Mammary gland WS8_4OHT 287 1 334 13 0 66 1210 RAB26,SNHG19,TRAF7,SNORD60,CASKIN1,MIR6511B1,MLST8,MIR3180-5,MIR4516,PKD1,MIR6511B2
SE_02_004200258 chr16:2147549-2160497 Sample_02_0042 Embryo endodermal CyT49_ES_D0 258 1 434 17 0 69 1210 TRAF7,SNORD60,RAB26,CASKIN1,MIR3180-5,MLST8,PKD1
SE_02_062700275 chr16:2147566-2157279 Sample_02_0627 Mammary gland WS8_VEH 275 1 322 13 0 65 1210 RAB26,SNHG19,TRAF7,SNORD60,CASKIN1,MIR6511B1,MLST8,MIR3180-5,MIR4516,PKD1,MIR6511B2
SE_02_003600424 chr16:2147642-2163049 Sample_02_0036 Embryo H7 424 9 511 22 0 70 1210 TRAF7,SNORD60,RAB26,CASKIN1,MIR3180-5,MLST8,PKD1,C16ORF79
SE_02_101600732 chr16:2147695-2156592 Sample_02_1016 Embryo H9_Mesendoderm_24h 732 1 302 13 0 65 1210 RAB26,SNHG19,TRAF7,SNORD60,CASKIN1,MIR6511B1,MLST8,MIR3180-5,MIR4516,PKD1,MIR6511B2
SE_04_000200693 chr16:2147928-2157452 Sample_04_0002 Blood cold shocked K562 693 1 324 13 0 66 1210 RAB26,SNHG19,TRAF7,SNORD60,CASKIN1,MIR6511B1,MLST8,MIR3180-5,MIR4516,PKD1,MIR6511B2
SE_02_032800097 chr16:2148363-2157571 Sample_02_0328 Embryo H9_naive 97 1 315 12 0 65 1090 TRAF7,SNORD60,RAB26,CASKIN1,MIR3180-5,MLST8,PKD1
SE_01_003400228 chr16:2148417-2157450 Sample_01_0034 Colon HCT116 228 1 309 12 0 65 1076 TRAF7,SNORD60,RAB26,CASKIN1,MIR3180-5,MLST8,PKD1
SE_02_066000619 chr16:2148657-2155393 Sample_02_0660 Mammary gland MCF10DCIS 619 1 251 10 0 37 866 RAB26,SNHG19,SNORD60,CASKIN1,MIR6511B1,MIR3180-5,MIR4516,TRAF7,MLST8,PKD1,MIR6511B2
SE_02_102600490 chr16:2148663-2155421 Sample_02_1026 Esophagus KYSE200 490 1 251 10 0 37 863 RAB26,SNHG19,SNORD60,CASKIN1,MIR6511B1,MIR3180-5,MIR4516,TRAF7,MLST8,PKD1,MIR6511B2
SE_02_076400274 chr16:2148669-2155715 Sample_02_0764 Prostate LNCaP_DHT_DMSO_6h 274 1 258 10 0 45 873 RAB26,SNHG19,SNORD60,CASKIN1,MIR6511B1,MIR3180-5,MIR4516,TRAF7,MLST8,PKD1,MIR6511B2
SE_02_102500765 chr16:2148680-2155454 Sample_02_1025 Esophagus KYSE150 765 1 251 10 0 38 852 RAB26,SNHG19,SNORD60,CASKIN1,MIR6511B1,MIR3180-5,MIR4516,TRAF7,MLST8,PKD1,MIR6511B2
SE_02_154100943 chr16:2148684-2155240 Sample_02_1541 Nasopharyngeal HNE1 943 1 240 10 0 37 837 RAB26,SNHG19,SNORD60,CASKIN1,MIR6511B1,MIR3180-5,MIR4516,TRAF7,MLST8,PKD1,MIR6511B2
SE_02_102900387 chr16:2148695-2155831 Sample_02_1029 Colon HCT116 387 1 261 10 0 50 896 RAB26,SNHG19,TRAF7,SNORD60,CASKIN1,MIR6511B1,MLST8,MIR3180-5,MIR4516,PKD1,MIR6511B2
SE_02_035500153 chr16:2148697-2160425 Sample_02_0355 Colon HCT15 153 1 409 15 0 62 969 TRAF7,SNORD60,RAB26,CASKIN1,MIR3180-5,MLST8,PKD1
SE_02_123900178 chr16:2148705-2155360 Sample_02_1239 Skin Waga_virus_positive 178 1 248 10 0 37 840 RAB26,SNHG19,SNORD60,CASKIN1,MIR6511B1,MIR3180-5,MIR4516,TRAF7,MLST8,PKD1,MIR6511B2
SE_02_035200303 chr16:2148709-2155624 Sample_02_0352 Colon HCT116 303 1 253 10 0 42 838 SNORD60,RAB26,CASKIN1,TRAF7,MLST8,PKD1,MIR3180-5
SE_02_066300738 chr16:2148714-2155469 Sample_02_0663 Thyroid TT 738 1 250 10 0 38 837 RAB26,SNHG19,SNORD60,CASKIN1,MIR6511B1,MIR3180-5,MIR4516,TRAF7,MLST8,PKD1,MIR6511B2
SE_02_141900475 chr16:2148755-2155323 Sample_02_1419 Brain hNSC 475 1 243 10 0 35 829 RAB26,SNHG19,SNORD60,CASKIN1,MIR6511B1,MIR3180-5,MIR4516,TRAF7,MLST8,PKD1,MIR6511B2
SE_02_153200600 chr16:2148828-2155413 Sample_02_1532 Mammary gland MCF10A 600 1 250 10 0 34 810 RAB26,SNHG19,SNORD60,CASKIN1,MIR6511B1,MIR3180-5,MIR4516,TRAF7,MLST8,PKD1,MIR6511B2
SE_02_021200055 chr16:2148912-2155809 Sample_02_0212 Burkitts lymphoma of the left maxilla Raji_DMSO 55 1 260 10 0 46 825 TRAF7,SNORD60,RAB26,CASKIN1,MIR3180-5,MLST8,PKD1
SE_02_006800248 chr16:2148918-2158048 Sample_02_0068 Skin A375_DMSO 248 2 330 12 0 55 905 TRAF7,SNORD60,RAB26,CASKIN1,MIR3180-5,MLST8,PKD1
SE_02_147600559 chr16:2148965-2155476 Sample_02_1476 Bone EW-1 559 1 249 10 0 34 771 RAB26,SNHG19,SNORD60,CASKIN1,MIR6511B1,MIR3180-5,MIR4516,TRAF7,MLST8,PKD1,MIR6511B2
SE_02_040500368 chr16:2148975-2155412 Sample_02_0405 Mammary gland ZR-75-30_KO 368 2 248 10 0 32 769 SNORD60,RAB26,CASKIN1,TRAF7,MLST8,PKD1,MIR3180-5
SE_02_157201070 chr16:2149811-2155485 Sample_02_1572 iPSCs FiPSC 1070 1 230 9 0 25 695 RAB26,SNHG19,SNORD60,CASKIN1,MIR6511B1,MIR3180-5,MIR4516,TRAF7,MLST8,PKD1,MIR6511B2
SE_02_157001374 chr16:2149964-2155366 Sample_02_1570 iPSCs EiPSC 1374 1 225 9 0 20 647 RAB26,SNHG19,SNORD60,CASKIN1,MIR6511B1,MIR3180-5,MIR4516,TRAF7,MLST8,PKD1,MIR6511B2
SE_02_069400100 chr16:2150125-2155375 Sample_02_0694 Lung NCI-H82_no infection 100 3 218 9 0 15 610 RAB26,SNHG19,SNORD60,CASKIN1,MIR6511B1,MIR3180-5,MIR4516,TRAF7,MLST8,PKD1,MIR6511B2
SE_02_113100797 chr16:2150172-2155354 Sample_02_1131 Pancreas T3M4 wt 797 1 213 9 0 15 599 RAB26,SNHG19,SNORD60,CASKIN1,MIR6511B1,MIR3180-5,MIR4516,TRAF7,MLST8,PKD1,MIR6511B2
SE_02_113801130 chr16:2150571-2157566 Sample_02_1138 Retinal Pigmented Epithelial RPE1-prometaphase 1130 1 264 10 0 36 712 RAB26,SNHG19,TRAF7,SNORD60,CASKIN1,MIR6511B1,MLST8,MIR3180-5,MIR4516,PKD1,MIR6511B2
SE_02_040600457 chr16:2151344-2155416 Sample_02_0406 Mammary gland ZR-75-30_parental 457 2 174 6 0 13 587 SNORD60,RAB26,CASKIN1,TRAF7,MLST8,PKD1,MIR3180-5
SE_02_135900973 chr16:2151407-2155374 Sample_02_1359 Other IC8-deltaEGF-L1596H_GSI_4h 973 1 169 6 0 13 578 RAB26,SNHG19,SNORD60,CASKIN1,MIR6511B1,MIR3180-5,MIR4516,TRAF7,MLST8,PKD1,MIR6511B2
SE_02_057400553 chr16:2151464-2157461 Sample_02_0574 Blood MOLM-13_sgNeg2 553 1 226 8 0 35 688 RAB26,SNHG19,TRAF7,SNORD60,CASKIN1,MIR6511B1,MLST8,MIR3180-5,MIR4516,PKD1,MIR6511B2
SE_02_055500893 chr16:2151638-2157866 Sample_02_0555 Other HAP1_WT 893 1 232 7 0 34 652 RAB26,SNHG19,TRAF7,SNORD60,CASKIN1,MIR6511B1,MLST8,MIR3180-5,MIR4516,PKD1,MIR6511B2
SE_02_058100547 chr16:2151764-2157481 Sample_02_0581 Blood MOLM13_empty_HG 547 1 212 7 0 30 627 RAB26,SNHG19,TRAF7,SNORD60,CASKIN1,MIR6511B1,MLST8,MIR3180-5,MIR4516,PKD1,MIR6511B2
SE_02_103700387 chr16:2151778-2155393 Sample_02_1037 Pharynx FaDu Control 387 1 154 5 0 8 491 RAB26,SNHG19,SNORD60,CASKIN1,MIR6511B1,MIR3180-5,MIR4516,TRAF7,MLST8,PKD1,MIR6511B2
SE_02_057700523 chr16:2151868-2157446 Sample_02_0577 Blood MOLM13_empty 523 1 208 7 0 30 603 RAB26,SNHG19,TRAF7,SNORD60,CASKIN1,MIR6511B1,MLST8,MIR3180-5,MIR4516,PKD1,MIR6511B2
SE_02_058200540 chr16:2151871-2157407 Sample_02_0582 Blood MOLM13_SIK3TQ_HG 540 1 208 7 0 30 603 RAB26,SNHG19,TRAF7,SNORD60,CASKIN1,MIR6511B1,MLST8,MIR3180-5,MIR4516,PKD1,MIR6511B2
SE_02_066100650 chr16:2151899-2155340 Sample_02_0661 Mammary gland MCF10DCIS-TetTCF7 650 1 147 5 0 8 473 RAB26,SNHG19,SNORD60,CASKIN1,MIR6511B1,MIR3180-5,MIR4516,TRAF7,MLST8,PKD1,MIR6511B2
SE_02_070200274 chr16:2152249-2155324 Sample_02_0702 Bone David_TC71 274 2 128 4 0 6 420 RAB26,SNHG19,SNORD60,CASKIN1,MIR6511B1,MIR3180-5,MIR4516,TRAF7,MLST8,PKD1,MIR6511B2
SE_02_132200642 chr16:2152263-2155499 Sample_02_1322 Connective Tissue HT1080_WT 642 1 135 4 0 10 420 RAB26,SNHG19,SNORD60,CASKIN1,MIR6511B1,MIR3180-5,MIR4516,TRAF7,MLST8,PKD1,MIR6511B2
SE_02_137200541 chr16:2152265-2155369 Sample_02_1372 Pancreas PSN1-untreated 541 1 134 4 0 6 420 RAB26,SNHG19,SNORD60,CASKIN1,MIR6511B1,MIR3180-5,MIR4516,TRAF7,MLST8,PKD1,MIR6511B2
SE_02_044800830 chr16:2152364-2155380 Sample_02_0448 Bone MNNG 830 1 129 4 0 6 420 RAB26,SNHG19,SNORD60,CASKIN1,MIR6511B1,MIR3180-5,MIR4516,TRAF7,MLST8,PKD1,MIR6511B2
SE_02_130500537 chr16:2152465-2155322 Sample_02_1305 Pancreas Gemcitabine resistant L3.6pl 537 1 117 4 0 6 420 RAB26,SNHG19,SNORD60,CASKIN1,MIR6511B1,MIR3180-5,MIR4516,TRAF7,MLST8,PKD1,MIR6511B2
SE_02_005000148 chr16:2152507-2155574 Sample_02_0050 Skin BJ 148 1 123 4 0 10 420 SNORD60,RAB26,CASKIN1,TRAF7,MLST8,PKD1,MIR3180-5
SE_02_111400272 chr16:2152609-2155380 Sample_02_1114 Embryonic kidney HEK293 272 1 120 4 0 6 420 RAB26,SNHG19,SNORD60,CASKIN1,MIR6511B1,MIR3180-5,MIR4516,TRAF7,MLST8,PKD1,MIR6511B2
SE_02_132001367 chr16:2152631-2155361 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 1367 1 118 4 0 6 419 RAB26,SNHG19,SNORD60,CASKIN1,MIR6511B1,MIR3180-5,MIR4516,TRAF7,MLST8,PKD1,MIR6511B2
SE_02_071201474 chr16:2152709-2155445 Sample_02_0712 Pancreas BxPC3_sgNEG 1474 1 117 4 0 7 411 RAB26,SNHG19,SNORD60,CASKIN1,MIR6511B1,MIR3180-5,MIR4516,TRAF7,MLST8,PKD1,MIR6511B2
SE_02_043700562 chr16:2152753-2154628 Sample_02_0437 Bone 143B 562 1 88 3 0 4 326 RAB26,CASKIN1,MIR6511B1,MIR3180-5,MIR4516,TRAF7,SNORD60,PKD1,MIR6511B2,SNHG19
Genomic distribution of SEs associated with SNORD60
Genome Browser

The strength of the tissue affected by the gene

Expression of SNORD60

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)