SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000164951
Gene: PDP1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr8:93857807-93926068 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_042700003 chr8:93801919-93961790 Sample_02_0427 Colon HCT116_shPAF1 3 10 4453 253 11 386 1011 PDP1,TMEM67
SE_02_042600004 chr8:93802287-93962229 Sample_02_0426 Colon HCT116_NONT 4 8 4460 253 12 388 1011 PDP1,TMEM67
SE_02_025900004 chr8:93817973-93962144 Sample_02_0259 Lung NCI-H1299_EGFP-NEO_reporter_cells_SAHA 4 14 4071 246 12 359 746 PDP1,TMEM67
SE_01_003400002 chr8:93818722-93944851 Sample_01_0034 Colon HCT116 2 14 3526 201 11 335 733 PDP1,TMEM67
SE_02_035200003 chr8:93819218-93961945 Sample_02_0352 Colon HCT116 3 25 4036 245 11 353 733 PDP1,TMEM67
SE_02_042200030 chr8:93819352-93886921 Sample_02_0422 Lung NCI-H1299_EGFP-NEO_reporter_cells_DACSB 30 6 1944 86 3 85 0 PDP1
SE_02_014100005 chr8:93820422-93939479 Sample_02_0141 Colon HCT116_Heterozygous_ARID1A-KO 5 13 3336 191 9 335 733 PDP1
SE_02_007400024 chr8:93821262-93919067 Sample_02_0074 Other 90-8TL_PDJQ 24 14 2806 150 8 211 377 PDP1
SE_02_011600124 chr8:93821287-93886985 Sample_02_0116 Mammary gland MDA-MB-231_untreat 124 7 1914 86 3 85 0 PDP1
SE_02_007300022 chr8:93821724-93946177 Sample_02_0073 Other 90-8TL_DMSO 22 21 3501 201 11 335 733 PDP1
SE_02_000900072 chr8:93835147-93883326 Sample_02_0009 Kidney 786-O_wtVHL 72 14 1359 68 2 80 0 PDP1
SE_02_005300002 chr8:93836074-93975063 Sample_02_0053 Colon DKO1 2 21 3931 252 12 357 733 PDP1
SE_02_014300003 chr8:93836357-93939775 Sample_02_0143 Colon HCT116_Parental 3 12 2857 176 9 334 733 PDP1
SE_02_001100757 chr8:93836694-93881758 Sample_02_0011 Kidney A-498_wtVHL 757 11 1268 58 1 80 0 PDP1
SE_02_017300760 chr8:93836846-93847492 Sample_02_0173 Lung IMR-90_senescent 760 4 268 10 0 40 0 PDP1
SE_02_014200010 chr8:93836896-93921688 Sample_02_0142 Colon HCT116_Homozygous_ARID1A-KO 10 10 2375 136 8 224 377 PDP1
SE_01_001901023 chr8:93837044-93858611 Sample_01_0019 Brain and spinal cord astrocyte 1023 4 594 35 0 58 0 PDP1
SE_02_008800657 chr8:93837055-93905208 Sample_02_0088 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_SGA_cycle_0 657 10 1940 110 8 139 0 PDP1
SE_01_006900544 chr8:93837131-93906267 Sample_01_0069 Adrenal gland adrenal-gland 544 11 1967 113 8 139 0 PDP1
SE_02_042300105 chr8:93837310-93906674 Sample_02_0423 Skin A375 105 16 1973 113 8 139 0 PDP1
SE_02_011000521 chr8:93862433-93961925 Sample_02_0110 Ovaries IOE11 521 12 2810 181 11 288 733 PDP1
SE_02_043300053 chr8:93867210-93939855 Sample_02_0433 Lung NCI-H1299_EGFP-NEO_reporter_cells_DAC 53 12 2005 124 9 268 733 PDP1
SE_02_019700014 chr8:93867739-93886185 Sample_02_0197 Stomach SNU1750 14 12 551 13 3 18 0 PDP1
SE_02_026000016 chr8:93868113-93944896 Sample_02_0260 Lung NCI-H1299_EGFP-NEO_reporter_cells_SB939 16 20 2123 132 11 266 733 PDP1
SE_02_025800030 chr8:93868888-93944717 Sample_02_0258 Lung NCI-H1299_EGFP-NEO_reporter_cells_DMSO 30 14 2088 131 11 266 733 PDP1
SE_02_026700372 chr8:93869011-93883351 Sample_02_0267 Kidney 786-O 372 5 396 10 2 12 0 PDP1
SE_02_001300205 chr8:93869025-93881889 Sample_02_0013 Kidney 786-O_HIF2A 205 4 359 7 1 12 0 PDP1
SE_02_001200224 chr8:93869049-93881358 Sample_02_0012 Kidney 786-O_non-targeting 224 3 338 6 1 12 0 PDP1
SE_02_017700708 chr8:93869161-93886059 Sample_02_0177 Urinary bladder J82 708 3 492 13 3 16 0 PDP1
SE_02_027000520 chr8:93870601-93886355 Sample_02_0270 Kidney PCS-400 520 7 460 12 3 16 0 PDP1
SE_02_031700383 chr8:93871596-93945061 Sample_02_0317 Neuroblastoma GICAN 383 7 2012 131 11 266 733 PDP1
SE_02_000500013 chr8:93871783-93962387 Sample_02_0005 Cervical cervical-cancer_KDM5C 13 8 2548 177 12 285 733 PDP1
SE_02_015100689 chr8:93871874-93886488 Sample_02_0151 Mammary gland MDA-MB-231_TA1del 689 3 425 15 3 16 0 PDP1
SE_02_030101237 chr8:93872110-93921803 Sample_02_0301 Neuroblastoma GIMEN 1237 8 1382 84 8 159 377 PDP1
SE_02_011100052 chr8:93872136-93944920 Sample_02_0111 Ovaries IOE4 52 11 1995 131 11 266 733 PDP1
SE_02_016600159 chr8:93872175-93882513 Sample_02_0166 Mammary gland HCC1954_Parental 159 1 285 6 1 12 0 PDP1
SE_02_016700090 chr8:93872175-93882513 Sample_02_0167 Mammary gland HCC1954_LCC2 90 1 285 6 1 12 0 PDP1
SE_02_018501040 chr8:93872253-93883916 Sample_02_0185 Skin UACC257 1040 4 322 9 3 12 0 PDP1
SE_02_010700740 chr8:93872345-93919140 Sample_02_0107 Endometrium EEC16 740 7 1316 81 8 142 377 PDP1
SE_02_000600070 chr8:93872621-93880690 Sample_02_0006 Cervical cervical-cancer_parental 70 5 213 4 1 12 0 PDP1
SE_01_005900184 chr8:93872777-93905476 Sample_01_0059 Lung PC-9 184 4 932 59 8 73 0 PDP1
SE_02_019600223 chr8:93873174-93880562 Sample_02_0196 Stomach NCC59 223 3 197 4 1 12 0 PDP1
SE_02_020100115 chr8:93873174-93880624 Sample_02_0201 Stomach MKN7 115 3 197 4 1 12 0 PDP1
SE_02_040600397 chr8:93873220-93882260 Sample_02_0406 Mammary gland ZR-75-30_parental 397 6 250 5 1 12 0 PDP1
SE_02_018200657 chr8:93873294-93906008 Sample_02_0182 melanoma LOX-IMVI 657 9 934 59 8 73 0 PDP1
SE_02_018800111 chr8:93873515-93881809 Sample_02_0188 Stomach MKN1 111 6 231 5 1 12 0 PDP1
SE_02_000700052 chr8:93874170-93886268 Sample_02_0007 Cervical cervical-cancer_vector 52 5 357 10 3 16 0 PDP1
SE_00_000300160 chr8:93896489-93945002 Sample_00_0003 Adrenal gland adrenal-gland_97d 160 6 1300 85 4 245 733 PDP1
SE_02_051700740 chr8:93896974-93939334 Sample_02_0517 Esophagus TE5 740 19 1121 74 2 245 733 PDP1,MIR378D2
SE_02_050600739 chr8:93896974-93939335 Sample_02_0506 Esophagus TE5_1 739 18 1121 74 2 245 733 PDP1,MIR378D2
SE_02_152400167 chr8:93897330-93961073 Sample_02_1524 Lung H3122 DMSO 167 21 1768 127 4 261 733 PDP1,MIR378D2
SE_02_089100360 chr8:93897608-93944776 Sample_02_0891 Heart left ventricle_LV1202 360 25 1270 82 4 245 733 PDP1,MIR378D2
SE_02_089700320 chr8:93897646-93944928 Sample_02_0897 Heart left ventricle_LV1325 320 17 1267 82 4 245 733 PDP1,MIR378D2
SE_02_089500184 chr8:93897663-93944709 Sample_02_0895 Heart left ventricle_LV1259 184 14 1264 81 4 245 733 PDP1,MIR378D2
SE_01_009800395 chr8:93897699-93944890 Sample_01_0098 Heart left ventricle_51y 395 16 1264 82 4 245 733 PDP1,MIR378D2
SE_02_089600504 chr8:93897818-93944844 Sample_02_0896 Heart left ventricle_LV1294 504 17 1259 82 4 245 733 PDP1,MIR378D2
SE_02_089800366 chr8:93897821-93944847 Sample_02_0898 Heart left ventricle_LV1356 366 16 1259 82 4 245 733 PDP1,MIR378D2
SE_02_089000393 chr8:93897825-93944754 Sample_02_0890 Heart left ventricle_LV1200 393 14 1258 82 4 245 733 PDP1,MIR378D2
SE_02_091900420 chr8:93897851-93944785 Sample_02_0919 Heart left ventricle_DCM_LV1532 420 15 1258 82 4 245 733 PDP1,MIR378D2
SE_02_090700393 chr8:93897858-93945312 Sample_02_0907 Heart left ventricle_DCM_LV1223 393 19 1269 82 4 245 733 PDP1,MIR378D2
SE_02_089200430 chr8:93897883-93944683 Sample_02_0892 Heart left ventricle_LV1215 430 18 1256 81 4 245 733 PDP1,MIR378D2
SE_02_090500366 chr8:93897883-93944859 Sample_02_0905 Heart left ventricle_DCM_LV1033 366 12 1258 82 4 245 733 PDP1,MIR378D2
SE_02_089400243 chr8:93897894-93944732 Sample_02_0894 Heart left ventricle_LV1248 243 14 1257 82 4 244 733 PDP1,MIR378D2
SE_00_002100221 chr8:93897899-93944618 Sample_00_0021 Lung lung_3y 221 12 1254 81 4 244 733 PDP1
SE_02_090200381 chr8:93897908-93944899 Sample_02_0902 Heart left ventricle_LV1558 381 13 1258 82 4 244 733 PDP1,MIR378D2
SE_02_091000403 chr8:93897929-93944937 Sample_02_0910 Heart left ventricle_DCM_LV1275 403 21 1256 81 4 244 733 PDP1,MIR378D2
SE_02_091200466 chr8:93897990-93944895 Sample_02_0912 Heart left ventricle_DCM_LV1300 466 20 1254 81 4 243 733 PDP1,MIR378D2
SE_02_097200144 chr8:93898105-93944464 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 144 14 1243 79 4 243 733 PDP1,MIR378D2
SE_02_090600466 chr8:93898105-93945292 Sample_02_0906 Heart left ventricle_DCM_LV1072 466 20 1260 81 4 243 733 PDP1,MIR378D2
SE_00_003300176 chr8:93898114-93944594 Sample_00_0033 Psoas muscle psoas-muscle_3y 176 14 1246 80 4 243 733 PDP1
SE_02_091700389 chr8:93898115-93944881 Sample_02_0917 Heart left ventricle_DCM_LV1433 389 16 1252 81 4 243 733 PDP1,MIR378D2
SE_02_091100384 chr8:93898141-93944807 Sample_02_0911 Heart left ventricle_DCM_LV1290 384 20 1250 81 4 243 733 PDP1,MIR378D2
SE_02_090300410 chr8:93898141-93944872 Sample_02_0903 Heart left ventricle_DCM_LV1009 410 19 1251 81 4 243 733 PDP1,MIR378D2
SE_02_090000546 chr8:93898148-93944769 Sample_02_0900 Heart left ventricle_LV1452 546 16 1250 81 4 243 733 PDP1,MIR378D2
SE_00_005200335 chr8:93898161-93944518 Sample_00_0052 Heart left ventricle 3y 335 23 1242 78 4 243 733 PDP1,MIR378D2
SE_02_090800685 chr8:93898179-93944736 Sample_02_0908 Heart left ventricle_DCM_LV1262 685 23 1249 80 4 243 733 PDP1,MIR378D2
SE_02_096300147 chr8:93898189-93944613 Sample_02_0963 Brain H3.3K27M_Tumor-derived cell-line_G477p6_cells 147 10 1246 79 4 243 733 PDP1,MIR378D2
SE_02_091300531 chr8:93898212-93944819 Sample_02_0913 Heart left ventricle_DCM_LV1304 531 23 1248 80 4 243 733 PDP1,MIR378D2
SE_02_091800357 chr8:93898233-93944822 Sample_02_0918 Heart left ventricle_DCM_LV1437 357 17 1248 80 4 243 733 PDP1,MIR378D2
SE_02_061600119 chr8:93898239-93961734 Sample_02_0616 Liposarcoma liposarcoma cells_LP6 119 20 1768 125 4 259 733 PDP1,MIR378D2
SE_02_090900433 chr8:93898371-93944876 Sample_02_0909 Heart left ventricle_DCM_LV1264 433 16 1246 80 4 243 733 PDP1,MIR378D2
SE_02_036700594 chr8:93901289-93944654 Sample_02_0367 Skeletal muscle NS129 594 10 1151 78 4 229 733 PDP1
SE_02_016600037 chr8:93901520-93961896 Sample_02_0166 Mammary gland HCC1954_Parental 37 7 1670 124 4 246 733 PDP1
SE_02_016700174 chr8:93901520-93961896 Sample_02_0167 Mammary gland HCC1954_LCC2 174 7 1670 124 4 246 733 PDP1
SE_02_076900336 chr8:93902046-93939289 Sample_02_0769 Ovary HEYA8 336 13 964 70 2 224 733 PDP1,MIR378D2
SE_02_042200072 chr8:93902706-93944833 Sample_02_0422 Lung NCI-H1299_EGFP-NEO_reporter_cells_DACSB 72 6 1116 78 4 222 733 PDP1
SE_02_077100241 chr8:93903065-93961042 Sample_02_0771 Ovary OVCA429_shGRHL2 241 27 1595 122 4 225 733 PDP1,MIR378D2
SE_02_051500153 chr8:93903254-93944103 Sample_02_0515 Esophagus KYSE140 153 17 1081 74 4 208 733 PDP1,MIR378D2
SE_02_079800276 chr8:93903908-93944574 Sample_02_0798 Brain 1919 276 13 1072 72 3 208 733 PDP1,MIR378D2
SE_02_072100196 chr8:93904361-93939702 Sample_02_0721 Pancreas HPAFII_TP63dN_DOX 196 16 916 64 1 207 733 PDP1,MIR378D2
SE_02_151100194 chr8:93904806-93961053 Sample_02_1511 Lung H3122_untreated 194 20 1552 117 3 211 733 PDP1,MIR378D2
SE_02_125800735 chr8:93905055-93938698 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 735 8 863 62 1 192 733 PDP1,MIR378D2
SE_02_058400588 chr8:93916814-93938786 Sample_02_0584 Lung H1299 WT 588 6 530 39 1 165 634 PDP1,MIR378D2
SE_02_125300574 chr8:93921079-93969883 Sample_02_1253 Mammary gland CAMA1 ER+/FGFR1-amplified 574 10 1377 103 4 135 356 PDP1,MIR378D2
SE_02_103601227 chr8:93926136-93972138 Sample_02_1036 Mammary gland HCC70_XY018 1227 20 1348 104 4 42 9 PDP1,MIR378D2
SE_02_103501061 chr8:93926180-93970855 Sample_02_1035 Mammary gland HCC70_Vehicle 1061 21 1296 101 4 42 6 PDP1,MIR378D2
SE_01_005800857 chr8:93926594-93939636 Sample_01_0058 Prostate PC-3 857 2 348 35 1 23 0 PDP1
SE_01_005900465 chr8:93926686-93944942 Sample_01_0059 Lung PC-9 465 3 500 42 3 23 0 PDP1
SE_02_067200196 chr8:93926941-93961171 Sample_02_0672 Endometrium endometrium cancer_DSG 196 8 978 86 3 39 0 PDP1,MIR378D2
SE_01_006800249 chr8:93927030-93936990 Sample_01_0068 Prostate: derived from metastatic site: vertebral metastasis VCaP 249 2 237 19 1 19 0 PDP1
SE_02_025700623 chr8:93927103-93961327 Sample_02_0257 Endometrioid endometrioid_adenocarcinoma_TumorA 623 5 982 86 3 38 0 PDP1
SE_02_132300351 chr8:93927333-93957415 Sample_02_1323 Colon DLD1_WT 351 6 870 82 3 28 0 PDP1,MIR378D2
SE_02_072000408 chr8:93927433-93938584 Sample_02_0720 Pancreas AsPC1_TP63dN_DOX 408 4 277 30 1 19 0 PDP1,MIR378D2
SE_02_067400192 chr8:93927490-93960410 Sample_02_0674 Endometrium E1_FA 192 10 950 85 3 32 0 PDP1,MIR378D2
SE_02_081700720 chr8:93927558-93952952 Sample_02_0817 Ovary Epithelial ovarian cancer 720 8 716 72 3 21 0 PDP1,MIR378D2
SE_02_000600127 chr8:93927576-93936570 Sample_02_0006 Cervical cervical-cancer_parental 127 4 211 16 1 17 0 PDP1
SE_02_135900645 chr8:93927678-93945278 Sample_02_1359 Other IC8-deltaEGF-L1596H_GSI_4h 645 10 473 42 3 20 0 PDP1,MIR378D2
SE_02_044600507 chr8:93928947-93992249 Sample_02_0446 Bone osteosarcoma tumor P2 507 14 1803 117 6 92 0 PDP1,MIR378D2
SE_02_156801098 chr8:93929260-93945981 Sample_02_1568 Heart Cardiac progenitor cells 1098 6 460 41 3 20 0 PDP1,MIR378D2
SE_02_001300431 chr8:93930936-93944558 Sample_02_0013 Kidney 786-O_HIF2A 431 5 385 37 3 13 0 PDP1
SE_02_135800779 chr8:93931569-93944922 Sample_02_1358 Other IC8-deltaEGF-L1596H_GSI_2h 779 10 375 38 3 12 0 PDP1,MIR378D2
SE_02_043000552 chr8:93931880-93939418 Sample_02_0430 Kidney 12364284 552 4 208 29 1 11 0 PDP1
SE_02_007400382 chr8:93933931-93961337 Sample_02_0074 Other 90-8TL_PDJQ 382 8 818 78 3 27 0 PDP1
SE_02_118100884 chr8:93976692-93992267 Sample_02_1181 Brain GBM10 884 5 413 10 2 48 0 PDP1
SE_01_006600240 chr8:93979273-94060529 Sample_01_0066 Smooth muscle smooth-muscle-cell 240 11 2245 127 5 138 0 PDP1
SE_02_154300361 chr8:93985759-93998811 Sample_02_1543 Gastrointestinal Stromal GIST-48 361 7 321 9 0 34 0 PDP1
SE_02_154800553 chr8:93986578-94024693 Sample_02_1548 Gastrointestinal Stromal GIST-226 553 10 1018 40 2 68 0 PDP1
SE_02_017300720 chr8:93987150-94044768 Sample_02_0173 Lung IMR-90_senescent 720 12 1566 71 4 103 0 PDP1
SE_02_064502151 chr8:93990097-93992172 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 2151 1 33 0 0 9 0 PDP1
SE_02_127500647 chr8:93991476-94036628 Sample_02_1275 Prostate PC3_Vorinostat 647 12 1233 54 3 63 0 PDP1
SE_02_086900979 chr8:94009454-94039840 Sample_02_0869 Fibroblast VH10_NO_UV 979 18 848 35 3 51 0 PDP1
SE_02_150600020 chr8:94011205-94083880 Sample_02_1506 Brain SHEP with tetracycline inducible MYC_DOX_6HR 20 33 2031 138 5 118 0 PDP1
SE_02_150500015 chr8:94011382-94083867 Sample_02_1505 Brain SHEP with tetracycline inducible MYC_DOX_2HR 15 29 2025 137 4 117 0 PDP1
SE_02_030100998 chr8:94014517-94082029 Sample_02_0301 Neuroblastoma GIMEN 998 9 1876 132 3 105 0 PDP1
SE_02_135600791 chr8:94014956-94060311 Sample_02_1356 Umbilical cord umbilical cord-derived mesenchymal stem cells_Young 791 8 1256 90 2 65 0 PDP1
SE_02_047401463 chr8:94015001-94072058 Sample_02_0474 Fibroblast umbilical cord Fibroblast 1463 10 1593 115 2 89 0 PDP1
SE_02_150400027 chr8:94015625-94079807 Sample_02_1504 Brain SHEP with tetracycline inducible MYCN_0HR 27 25 1793 127 3 105 0 PDP1
SE_02_079900153 chr8:94017813-94045321 Sample_02_0799 Brain MESMN1 153 15 767 43 2 56 0 PDP1
SE_02_016100336 chr8:94017892-94036987 Sample_02_0161 Brain U87 336 5 536 25 1 32 0 PDP1
SE_02_141900252 chr8:94017909-94037622 Sample_02_1419 Brain hNSC 252 7 556 26 1 32 0 PDP1
SE_02_076600258 chr8:94018254-94080524 Sample_02_0766 Ovary PEO1 258 20 1745 127 3 101 0 PDP1
SE_02_007600717 chr8:94018762-94048081 Sample_02_0076 Autonomic ganglia SH-SY5Y_DMSO_3h 717 9 821 45 2 50 0 PDP1
SE_02_115100275 chr8:94032367-94088650 Sample_02_1151 Mammary gland MCF-7_UNTR 275 23 1592 126 4 77 0 PDP1
SE_00_005300202 chr8:94034676-94065888 Sample_00_0053 Embryo trophoblast cell originated from H1 202 8 869 81 2 48 0 PDP1
Genomic distribution of SEs associated with PDP1
Genome Browser

The strength of the tissue affected by the gene

Expression of PDP1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)