Sample overview


Search result

SE ID SE Region Size Rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_005300244 chr1:148968833-148994368 25535 244 4 130 46 0 79 621 PDE4DIP
SE_02_005300214 chr1:149838770-149844738 5968 214 1 47 6 1 55 329 HIST2H2AA4,HIST2H3A,HIST2H2BF,HIST2H4B,HIST2H3D,HIST2H2BE,HIST2H2BC,HIST2H2AB,HIST2H2AC,HIST2H3C,HIST2H2AA3
SE_02_005300227 chr1:149849880-149855041 5161 227 1 24 0 0 54 463 HIST2H2BC,HIST2H3A,HIST2H2AA4,HIST2H2BF,BOLA1,HIST2H4B,HIST2H3D,HIST2H2BE,HIST2H2AB,HIST2H2AC,HIST2H3C,HIST2H2AA3
SE_02_005300171 chr1:156096395-156131150 34755 171 5 836 73 4 248 695 LMNA,ROBLD3,RAB25,SEMA4A,UBQLN4,MEX3A
SE_02_005300272 chr1:156744904-156753014 8110 272 2 205 15 0 81 517 HDGF,C1ORF66,PRCC,ISG20L2,MRPL24,CRABP2
SE_02_005300149 chr1:158001025-158025738 24713 149 7 632 18 4 112 0 KIRREL
SE_02_005300045 chr1:16133645-16190067 56422 45 14 1590 162 4 230 1115 EPHA2,ARHGEF19,C1ORF89
SE_02_005300048 chr1:205257158-205325738 68580 48 18 1872 185 31 348 2202 NUAK2,TMCC2,DSTYK,KLHDC8A
SE_02_005300273 chr1:209363769-209421673 57904 273 12 1643 86 4 277 0 MIR205,LOC642587
SE_02_005300103 chr1:234598382-234633383 35001 103 6 936 68 3 0 927 IRF2BP2,NCRNA00184
SE_02_005300221 chr1:234709254-234732823 23569 221 4 691 51 3 89 673 NCRNA00184
SE_02_005300070 chr1:234954750-235013096 58346 70 9 1807 66 6 213 308 SNORA14B
SE_02_005300158 chr1:31936956-31958353 21397 158 4 575 20 0 0 226 PTP4A2
SE_02_005300258 chr1:39176467-39213712 37245 258 10 916 54 2 92 147 MACF1
SE_02_005300230 chr1:77531770-77542229 10459 230 2 310 26 0 6 92 AK5,ZZZ3
SE_02_005300166 chr1:8115946-8183461 67515 166 10 2135 171 4 91 0 ERRFI1
SE_02_005300035 chr1:94295426-94337825 42399 35 5 1091 46 2 125 0 ARHGAP29
SE_02_005300100 chr1:94526979-94563803 36824 100 9 979 57 4 113 686 F3
SE_02_005300014 chr1:94578795-94674173 95378 14 20 2880 183 12 142 123 F3
SE_02_005300018 chr1:94693820-94808554 114734 18 22 3249 331 3 171 134 SLC44A3
SE_02_005300135 chr10:100002521-100011282 8761 135 1 212 36 0 20 146 DNMBP
SE_02_005300191 chr10:100363518-100375289 11771 191 3 296 30 0 15 295 NCRNA00263,SCD,PKD2L1
SE_02_005300013 chr10:102598863-102661282 62419 13 10 1483 154 24 565 2456 SUFU,TRIM8
SE_02_005300139 chr10:103215017-103243055 28038 139 5 656 59 0 21 0 NT5C2,LOC729020,INA
SE_02_005300156 chr10:110394765-110426941 32176 156 7 925 51 3 79 94 DUSP5
SE_02_005300069 chr10:11856582-11902585 46003 69 7 1638 162 5 0 1052 C10ORF47
SE_02_005300250 chr10:125158233-125163246 5013 250 1 85 3 0 136 427 CTBP2
SE_02_005300262 chr10:21272904-21337887 64983 262 10 1873 52 1 110 0 NEBL
SE_02_005300104 chr10:3739484-3788443 48959 104 8 1531 53 6 336 1178 KLF6
SE_02_005300159 chr10:3803025-3830321 27296 159 7 1043 18 5 103 0 KLF6
SE_02_005300088 chr10:43997371-44030338 32967 88 4 1023 55 6 134 0 LOC283033,C10ORF136
SE_02_005300232 chr10:52308083-52321113 13030 232 3 363 19 0 70 538 DKK1
SE_02_005300184 chr10:52437048-52456238 19190 184 5 502 20 2 15 187 DKK1
SE_02_005300182 chr10:69203712-69233605 29893 182 5 909 155 20 33 432 SUPV3L1,HKDC1,HK1
SE_02_005300077 chr10:72286176-72336545 50369 77 13 1426 99 0 123 739 DNAJB12,DDIT4
SE_02_005300240 chr10:93376195-93410116 33921 240 9 998 82 3 91 786 MYOF
SE_02_005300043 chr10:93423920-93482722 58802 43 16 1707 219 7 148 389 MYOF,CEP55
SE_02_005300186 chr10:99775103-99786916 11813 186 4 253 25 2 3 122 ABCC2,CUTC,COX15
SE_02_005300057 chr10:99905668-99939974 34306 57 5 920 120 0 40 537 NCRNA00093,DNMBP
SE_02_005300058 chr10:99959286-99986117 26831 58 9 706 78 0 37 99 DNMBP,NCRNA00093
SE_02_005300192 chr11:102596850-102606130 9280 192 2 287 50 0 7 0 MMP20,MMP7
SE_02_005300196 chr11:10301838-10309230 7392 196 1 167 14 2 83 530 ADM,SBF2
SE_02_005300130 chr11:10646298-10666981 20683 130 4 614 62 4 78 126 MRVI1
SE_02_005300055 chr11:118887672-118930392 42720 55 8 1149 61 3 737 3118 CXCR5,BCL9L,UPK2,FOXR1
SE_02_005300208 chr11:12159841-12185134 25293 208 7 772 64 3 62 109 MICAL2
SE_02_005300264 chr11:64852897-64871779 18882 264 6 605 54 0 97 818 EHD1,ATG2A,MEN1,MAP4K2,CDC42BPG,MIR192,MIR194-2
SE_02_005300044 chr11:65415125-65431032 15907 44 1 452 17 2 42 1128 NEAT1,FRMD8,SLC25A45,MIR612
SE_02_005300010 chr11:65452372-65511332 58960 10 9 1659 220 5 50 963 MALAT1,NEAT1,MIR612,SCYL1,LTBP3
SE_02_005300201 chr11:65910725-65920623 9898 201 1 278 32 0 159 939 C11ORF68,DRAP1,CCDC85B,CTSW,EFEMP2,SART1,TSGA10IP,FIBP,FOSL1
SE_02_005300041 chr11:69292848-69322333 29485 41 5 917 52 2 77 665 MYEOV
SE_02_005300188 chr11:69327729-69383146 55417 188 12 1667 81 1 28 70 MYEOV
SE_02_005300050 chr11:69415191-69452362 37171 50 6 1263 45 7 60 887 MYEOV
SE_02_005300096 chr11:69635737-69649603 13866 96 1 412 8 2 114 603 CCND1,ORAOV1
SE_02_005300060 chr11:9754126-9864782 110656 60 20 2943 243 16 357 2623 LOC283104,LOC440028,SBF2
SE_02_005300251 chr11:9899150-9909138 9988 251 1 279 51 7 32 0 SBF2,LOC440028
SE_02_005300136 chr12:108804084-108858003 53919 136 9 1515 58 3 90 896 SSH1,DAO
SE_02_005300101 chr12:113192642-113247972 55330 101 9 1404 102 1 105 806 TPCN1,IQCD,DDX54,CCDC42B,C12ORF52
SE_02_005300185 chr12:121798296-121805672 7376 185 1 171 9 0 125 816 LOC338799,SETD1B,RHOF
SE_02_005300207 chr12:124913731-124941158 27427 207 5 986 29 4 15 787 UBC,SCARB1,DHX37
SE_02_005300229 chr12:12800485-12842342 41857 229 8 1283 64 2 77 734 DDX47,APOLD1,MIR613,RPL13AP20,GPRC5A
SE_02_005300161 chr12:12869438-12904643 35205 161 10 1068 57 2 54 383 RPL13AP20,GPRC5A,GPRC5D,MIR614
SE_02_005300200 chr12:46547491-46564332 16841 200 5 378 18 2 30 0 SLC38A2
SE_02_005300195 chr12:52922597-52929012 6415 195 2 180 9 1 28 88 KRT8,KRT18
SE_02_005300067 chr12:62693156-62745817 52661 67 14 1508 20 8 145 174 PPM1H,MIRLET7I
SE_02_005300228 chr12:62783194-62794963 11769 228 2 321 5 2 27 37 PPM1H
SE_02_005300093 chr12:6322849-6373858 51009 93 10 1527 104 18 191 2742 PLEKHG6,SCNN1A,TNFRSF1A,LTBR
SE_02_005300165 chr12:75549713-75594168 44455 165 13 1173 142 2 131 0 KRR1
SE_02_005300033 chr12:75621844-75668498 46654 33 11 1287 126 4 133 0 KRR1
SE_02_005300011 chr12:75684246-75798553 114307 11 25 3235 121 7 237 68 KRR1
SE_02_005300218 chr12:75847584-75895964 48380 218 13 1419 27 7 132 0 PHLDA1
SE_02_005300137 chr12:75932932-75959897 26965 137 9 650 17 2 83 0 PHLDA1
SE_02_005300085 chr12:75975982-76033459 57477 85 11 1611 54 9 203 792 PHLDA1
SE_02_005300047 chr12:89345677-89392343 46666 47 7 1154 113 6 335 485 DUSP6
SE_02_005300248 chr12:89438930-89462359 23429 248 4 586 61 1 62 57 POC1B,GALNT4
SE_02_005300179 chr13:109242295-109275629 33334 179 11 1055 121 5 63 0 IRS2
SE_02_005300256 chr13:114114236-114133054 18818 256 6 595 53 2 51 193 RASA3
SE_02_005300253 chr13:99967850-99987686 19836 253 3 473 4 3 451 1343 ZIC2,ZIC5
SE_02_005300219 chr14:103107488-103138601 31113 219 7 986 70 1 145 2244 C14ORF73,TNFAIP2
SE_02_005300170 chr14:104665351-104701568 36217 170 4 1168 102 1 48 370 INF2,ADSSL1
SE_02_005300132 chr14:35365028-35406117 41089 132 11 1339 199 10 184 620 NFKBIA
SE_02_005300040 chr14:49997835-50042401 44566 40 11 1266 89 5 92 1225 C14ORF182
SE_02_005300194 chr14:50056088-50063749 7661 194 2 215 20 1 21 0 C14ORF183,C14ORF182
SE_02_005300078 chr14:61492365-61570562 78197 78 17 2268 121 34 210 1433 PRKCH,HIF1A
SE_02_005300190 chr14:65221677-65259813 38136 190 10 1174 114 6 51 58 MAX
SE_02_005300189 chr14:68229189-68252352 23163 189 3 544 18 6 154 82 RAD51L1
SE_02_005300107 chr14:68358814-68413974 55160 107 11 1349 37 4 167 54 RAD51L1,ZFP36L1
SE_02_005300008 chr14:68449393-68639472 190079 8 40 4899 226 19 783 488 RAD51L1,ZFP36L1
SE_02_005300059 chr14:68653921-68716381 62460 59 10 1774 72 11 314 0 ZFP36L1
SE_02_005300042 chr14:68778192-68797661 19469 42 3 601 19 6 272 1034 C14ORF181,ZFP36L1
SE_02_005300238 chr14:68813005-68825152 12147 238 3 312 7 0 60 0 ZFP36L1,C14ORF181
SE_02_005300114 chr14:76946098-76963342 17244 114 2 453 36 0 91 0 C14ORF4
SE_02_005300024 chr14:77021681-77060350 38669 24 8 1083 75 12 506 1041 C14ORF4,KIAA1737
SE_02_005300257 chr15:56037830-56046213 8383 257 2 255 10 0 1 0 NEDD4
SE_02_005300032 chr15:60362256-60414638 52382 32 10 1359 104 6 166 430 ANXA2
SE_02_005300007 chr15:67039223-67194499 155276 7 33 4281 333 52 553 1717 SMAD3
SE_02_005300105 chr15:92797525-92833073 35548 105 5 1100 32 0 47 0 LOC100507217,ASB9P1
SE_02_005300263 chr15:96329498-96355137 25639 263 5 578 1 0 664 1143 NR2F2,MIR1469
SE_02_005300062 chr16:29250632-29292794 42162 62 7 1532 209 2 0 186 RUNDC2C
SE_02_005300225 chr16:3019474-3024613 5139 225 1 165 7 0 95 1099 HCFC1R1,THOC6,TNFRSF12A,IL32,CLDN9,LOC283875,CCDC64B,PKMYT1,MMP25,CLDN6
SE_02_005300211 chr16:56604983-56611988 7005 211 1 206 23 0 21 230 MT2A,MT4,MT1E,MT1A,MT3,MT1DP,MT1M,MT1L,MT1B,MT1JP,MT1F
SE_02_005300091 chr16:57757441-57817211 59770 91 14 1770 149 5 283 3605 KIFC3,KATNB1
SE_02_005300109 chr16:82626585-82656253 29668 109 4 1370 45 7 104 205 CDH13
SE_02_005300056 chr16:88223264-88266688 43424 56 8 1814 58 3 15 0 ZNF469,ZFPM1
SE_02_005300072 chr16:89301497-89344727 43230 72 3 1632 113 5 27 880 ANKRD11,ZNF778
SE_02_005300269 chr16:89907533-89924320 16787 269 3 702 59 10 58 1865 TUBB3,MC1R,TCF25,DEF8,AFG3L1P,CENPBD1
SE_02_005300210 chr17:17809249-17850292 41043 210 5 1091 88 8 213 3952 MIR33B,SREBF1,TOM1L2,RAI1,SMCR5
SE_02_005300173 chr17:40012600-40027824 15224 173 2 510 63 3 139 1806 SNORD124,MED24,CSF3,PSMD3,GSDMA,THRA
SE_02_005300112 chr17:43304160-43334383 30223 112 4 966 114 1 0 201 TMEM106A
SE_02_005300183 chr17:4944131-4952318 8187 183 2 263 21 0 220 990 ENO3,RNF167,PFN1,CAMTA2,C17ORF107,SLC25A11,CHRNE,GP1BA,INCA1,KIF1C,SPAG7
SE_02_005300123 chr17:50046704-50066588 19884 123 4 551 51 5 158 1094 ITGA3,PDK2
SE_02_005300224 chr17:56677660-56716205 38545 224 12 1190 56 7 0 0 NOG
SE_02_005300086 chr17:57859077-57899393 40316 86 6 1146 77 7 199 1594 CUEDC1,MRPS23
SE_02_005300223 chr17:57935022-57956305 21283 223 4 523 24 0 89 162 CUEDC1,VEZF1
SE_02_005300001 chr17:59745900-59860161 114261 1 9 2508 241 8 277 508 TUBD1,MIR21,TMEM49,PTRH2,RPS6KB1
SE_02_005300080 chr17:64667664-64741565 73901 80 11 1889 100 1 154 0 SMURF2,LOC146880
SE_02_005300102 chr17:72373870-72424415 50545 102 7 1398 51 7 247 287 LOC100499467
SE_02_005300205 chr17:75673041-75708372 35331 205 8 959 49 7 91 1138 SAP30BP,RECQL5,LOC643008,LOC100130933,ITGB4
SE_02_005300169 chr17:77279196-77326507 47311 169 6 1496 50 4 110 682 SEPT9,9-SEP
SE_02_005300097 chr17:78293884-78366105 72221 97 15 2314 41 3 321 799 SOCS3,PGS1
SE_02_005300198 chr17:81328185-81350799 22614 198 4 742 54 0 105 217 TMEM105,SLC38A10,C17ORF55,BAHCC1
SE_02_005300068 chr17:81386505-81425792 39287 68 7 1386 87 2 410 274 BAHCC1,MIR3186
SE_02_005300144 chr17:81510437-81519761 9324 144 2 440 43 1 98 553 ACTG1,FSCN2,C17ORF70
SE_02_005300131 chr17:82205722-82252928 47206 131 7 1715 150 2 122 3014 SLC16A3,CCDC57,CSNK1D
SE_02_005300172 chr18:3320764-3385738 64974 172 12 2104 82 6 43 0 TGIF1
SE_02_005300046 chr18:3444658-3467470 22812 46 6 624 22 3 215 979 TGIF1
SE_02_005300006 chr18:3578596-3670075 91479 6 14 2578 122 9 147 893 FLJ35776,DLGAP1
SE_02_005300176 chr19:1100755-1137192 36437 176 9 1420 128 9 175 4260 SBNO2,GPX4,HMHA1,POLR2E
SE_02_005300246 chr19:11084644-11097348 12704 246 2 364 15 10 6 318 LDLR
SE_02_005300079 chr19:1164563-1182802 18239 79 1 639 36 0 48 158 SBNO2,STK11
SE_02_005300209 chr19:1247554-1254667 7113 209 1 267 6 1 149 844 MIDN,CIRBP,C19ORF23,ATP5D,STK11,C19ORF26,EFNA2,C19ORF24
SE_02_005300193 chr19:13052341-13079680 27339 193 5 684 25 3 261 547 NFIX,NACC1,LYL1,TRMT1
SE_02_005300082 chr19:13140661-13187682 47021 82 10 1416 69 2 118 1422 STX10,NACC1,IER2,TRMT1,LYL1
SE_02_005300052 chr19:13835285-13855405 20120 52 1 583 45 1 194 345 LOC284454,MIR24-2,MIR23A,MIR27A,MIR181C,ZSWIM4,MIR181D,NANOS3
SE_02_005300160 chr19:15826800-15838661 11861 160 3 407 77 0 0 522 UCA1,OR10H1,OR10H5,CYP4F24P
SE_02_005300217 chr19:18279197-18305777 26580 217 5 743 81 1 112 707 MIR3188,JUND,LSM4,PDE4C,LOC729966,KIAA1683,PGPEP1
SE_02_005300127 chr19:18361635-18388573 26938 127 11 779 72 3 18 1552 GDF15,PGPEP1,MIR3189,LSM4,LRRC25,ISYNA1,SSBP4
SE_02_005300095 chr19:2517713-2556877 39164 95 8 1460 55 2 0 166 GNG7,GADD45B
SE_02_005300236 chr19:37977373-38005459 28086 236 5 757 80 6 86 0 SIPA1L3
SE_02_005300037 chr19:38636976-38730122 93146 37 23 2778 320 7 422 2359 ACTN4,EIF3K,CAPN12,LGALS7,MAP4K1
SE_02_005300261 chr19:39397650-39410946 13296 261 3 322 19 0 187 1228 ZFP36,MED29,PLEKHG2,SUPT5H,RPS16,PAF1
SE_02_005300140 chr19:4051186-4068228 17042 140 4 514 26 0 215 691 ZBTB7A,PIAS4
SE_02_005300138 chr19:44740273-44765815 25542 138 5 686 41 6 182 1215 BCL3,CEACAM16,CBLC,BCAM
SE_02_005300053 chr19:53977675-54044111 66436 53 15 2079 144 2 119 2833 CACNG8,MIR935,CACNG6,VSTM1,TARM1
SE_02_005300152 chr2:111471160-111498405 27245 152 4 614 33 0 51 237 LOC541471
SE_02_005300099 chr2:112780612-112797432 16820 99 1 420 51 5 52 292 IL1A,IL1B,CKAP2L
SE_02_005300108 chr2:112808380-112817779 9399 108 1 249 18 3 27 0 IL1B,CKAP2L,IL1A
SE_02_005300076 chr2:112868132-112892831 24699 76 3 547 42 2 33 0 IL1B,IL1F7
SE_02_005300234 chr2:188290926-188316763 25837 234 5 679 91 2 0 437 GULP1,MIR561
SE_02_005300061 chr2:189085731-189164481 78750 61 14 1888 167 1 121 324 COL5A2,MIR3129
SE_02_005300089 chr2:189201533-189232846 31313 89 8 725 42 1 38 0 COL5A2
SE_02_005300090 chr2:201114380-201132022 17642 90 3 375 32 2 31 394 CFLAR,FAM126B,NDUFB3
SE_02_005300202 chr2:201146601-201160268 13667 202 4 342 52 1 19 394 CFLAR,CASP10
SE_02_005300162 chr2:20576430-20597733 21303 162 4 745 44 0 46 0 HS1BP3
SE_02_005300167 chr2:231661568-231686194 24626 167 5 744 16 3 66 0 PTMA,MIR1244-2
SE_02_005300180 chr2:234968944-234997884 28940 180 6 1005 10 2 33 333 SH3BP4
SE_02_005300249 chr2:28267470-28278081 10611 249 2 246 17 1 85 0 BRE,FOSL2
SE_02_005300134 chr2:28291075-28367960 76885 134 14 2090 138 6 283 630 BRE,FOSL2
SE_02_005300119 chr2:28386511-28415605 29094 119 6 732 38 3 72 1561 FOSL2
SE_02_005300231 chr2:29106286-29130879 24593 231 5 646 21 0 37 349 CLIP4,C2ORF71
SE_02_005300245 chr2:36553664-36570133 16469 245 3 567 44 3 39 94 FEZ2
SE_02_005300155 chr2:47064725-47089767 25042 155 5 935 34 3 62 741 TTC7A,C2ORF61
SE_02_005300150 chr2:70085210-70110141 24931 150 6 640 49 0 141 686 LOC400960,PCBP1,LOC100133985
SE_02_005300168 chr2:87452121-87460004 7883 168 2 179 18 0 30 82 NCRNA00152
SE_02_005300220 chr20:19973624-19995631 22007 220 5 692 64 2 148 404 RIN2,NAA20
SE_02_005300020 chr20:31660375-31728053 67678 20 14 1492 104 9 347 910 BCL2L1,COX4I2,TPX2
SE_02_005300066 chr20:38110130-38188365 78235 66 19 2369 197 3 159 2241 TGM2
SE_02_005300039 chr20:47314019-47373098 59079 39 10 1628 13 4 192 1228 ZMYND8,LOC100131496
SE_02_005300005 chr20:50624537-50773124 148587 5 28 4274 313 7 255 1012 FAM65C,PARD6B,BCAS4,MIR645
SE_02_005300028 chr20:53578527-53692830 114303 28 22 3074 37 4 245 455 ZNF217
SE_02_005300054 chr20:53734092-53790423 56331 54 12 1646 5 7 53 0 SUMO1P1
SE_02_005300098 chr20:53884756-53949774 65018 98 11 1789 33 7 87 204 BCAS1,SUMO1P1
SE_02_005300113 chr20:62349685-62377504 27819 113 4 1076 96 0 164 779 LAMA5,RPS21,ADRM1,CABLES2
SE_02_005300270 chr20:62633312-62669695 36383 270 8 1389 59 2 83 1828 SLCO4A1,LOC100127888,NTSR1
SE_02_005300087 chr20:63680502-63702418 21916 87 3 1058 51 7 75 3405 RTEL1,TNFRSF6B,ARFRP1,ZGPAT,LIME1,SLC2A4RG,STMN3
SE_02_005300030 chr21:29161669-29234687 73018 30 15 1909 305 9 109 313 C21ORF7,NCRNA00189
SE_02_005300157 chr21:45291917-45332158 40241 157 7 1558 93 2 39 1022 LOC642852,POFUT2
SE_02_005300239 chr21:45360933-45369487 8554 239 3 382 51 1 22 0 COL18A1
SE_02_005300199 chr21:45863906-45878786 14880 199 5 506 61 2 8 0 PCBP3
SE_02_005300073 chr21:45971252-46007961 36709 73 9 1517 124 2 120 3741 COL6A1
SE_02_005300049 chr21:46033305-46084153 50848 49 12 2048 130 2 32 0 COL6A2
SE_02_005300121 chr22:24188103-24216700 28597 121 6 794 85 0 6 273 SUSD2,POM121L9P,GGT5
SE_02_005300003 chr22:30183412-30260710 77298 3 6 2061 190 17 472 1238 LIF,OSM,GATSL3
SE_02_005300146 chr22:32744017-32766620 22603 146 5 696 58 4 62 0 SYN3,TIMP3
SE_02_005300031 chr22:36302241-36432767 130526 31 28 3979 321 11 406 2425 MYH9,APOL1,TXN2
SE_02_005300241 chr22:38213867-38241784 27917 241 7 865 56 2 119 2341 TMEM184B,MAFF,PLA2G6
SE_02_005300074 chr22:39170491-39186567 16076 74 2 526 50 0 77 0 CBX7
SE_02_005300026 chr22:39201963-39257067 55104 26 8 1758 136 12 350 1521 PDGFB,CBX7
SE_02_005300181 chr22:41287397-41306468 19071 181 5 428 50 6 70 153 ZC3H7B,RANGAP1,CHADL
SE_02_005300110 chr22:46067400-46089482 22082 110 5 679 22 1 167 131 LOC400931,C22ORF26,MIRLET7A3,MIR3619,LOC100271722,LOC150381,MIRLET7B
SE_02_005300125 chr22:49933976-49971129 37153 125 5 1386 129 5 148 881 PIM3,CRELD2,ALG12
SE_02_005300203 chr22:50278102-50314797 36695 203 7 1326 113 1 268 3856 FAM116B,PLXNB2,TUBGCP6,MAPK12,HDAC10,MAPK11,PPP6R2
SE_02_005300212 chr22:50537211-50548556 11345 212 1 350 62 4 17 222 KLHDC7B,ODF3B,C22ORF41,SCO2,NCAPH2,CPT1B,LMF2,LOC100144603,TYMP,CHKB
SE_02_005300064 chr3:10168216-10222733 54517 64 10 1806 180 3 43 617 IRAK2,TATDN2,VHL
SE_02_005300266 chr3:104409588-104446955 37367 266 13 1070 28 1 25 0 MIR548A3
SE_02_005300120 chr3:107206664-107237556 30892 120 4 713 18 2 54 0 LOC100302640,LOC344595
SE_02_005300122 chr3:111901571-111938444 36873 122 8 961 90 4 97 606 PHLDB2,ABHD10
SE_02_005300254 chr3:11277999-11292438 14439 254 2 350 23 1 1 0 ATG7,HRH1
SE_02_005300204 chr3:134308498-134335240 26742 204 7 728 62 0 118 0 AMOTL2
SE_02_005300151 chr3:134356925-134376115 19190 151 6 537 21 4 166 1559 AMOTL2
SE_02_005300268 chr3:141361236-141370262 9026 268 2 210 4 1 38 135 ZBTB38
SE_02_005300023 chr3:149527814-149626293 98479 23 27 2595 59 10 207 182 WWTR1
SE_02_005300226 chr3:15630244-15655823 25579 226 6 788 103 1 71 465 BTD,HACL1
SE_02_005300260 chr3:177344006-177360372 16366 260 2 453 11 0 76 0 TBL1XR1
SE_02_005300175 chr3:192873053-192900959 27906 175 8 971 84 6 69 0 C3ORF59
SE_02_005300206 chr3:193779696-193796041 16345 206 4 482 6 1 54 0 OPA1
SE_02_005300174 chr3:193851959-193884814 32855 174 5 1020 26 2 54 0 LOC100128023,LOC647323
SE_02_005300255 chr3:193928322-193975361 47039 255 10 1315 13 5 201 249 LOC647323,LOC100128023
SE_02_005300071 chr3:194131646-194144657 13011 71 1 310 4 1 271 492 HES1
SE_02_005300265 chr3:194254861-194278387 23526 265 4 718 3 0 77 0 LOC100131551
SE_02_005300259 chr3:194294818-194323856 29038 259 5 892 34 2 69 784 LOC100131551,LRRC15,CPN2
SE_02_005300083 chr3:195094056-195124245 30189 83 6 1095 127 3 48 88 C3ORF21
SE_02_005300065 chr3:195138637-195211201 72564 65 21 2244 185 4 51 522 C3ORF21
SE_02_005300242 chr3:4976822-4997459 20637 242 4 581 24 4 284 671 BHLHE40
SE_02_005300094 chr3:98959271-98992132 32861 94 10 796 108 0 77 0 DCBLD2
SE_02_005300009 chr4:7802800-7940255 137455 9 34 5193 514 12 142 651 AFAP1,AFAP1-AS1
SE_02_005300142 chr4:78529053-78570302 41249 142 11 1168 147 1 88 763 FRAS1,ANXA3
SE_02_005300034 chr4:7954559-7988072 33513 34 4 1171 67 2 40 619 ABLIM2,AFAP1
SE_02_005300116 chr5:134502174-134528250 26076 116 5 612 57 6 318 814 PHF15
SE_02_005300197 chr5:151082332-151096669 14337 197 3 448 55 5 88 213 ANXA6,TNIP1
SE_02_005300243 chr5:160463088-160478455 15367 243 4 423 27 1 30 117 MIR3142,PTTG1,MIR146A,SLU7
SE_02_005300235 chr5:57816133-57844373 28240 235 5 747 15 2 61 0 ACTBL2
SE_02_005300271 chr6:14731100-14744710 13610 271 2 422 1 2 36 0 JARID2
SE_02_005300215 chr6:148322803-148345460 22657 215 6 643 2 1 61 228 SASH1
SE_02_005300164 chr6:148360791-148384159 23368 164 6 712 26 1 48 0 SASH1
SE_02_005300129 chr6:151035603-151088225 52622 129 12 1696 62 9 103 114 MTHFD1L,AKAP12
SE_02_005300012 chr6:30737393-30821102 83709 12 14 2480 666 74 151 1261 FLOT1,IER3,NRM,MDC1,KIAA1949,TUBB
SE_02_005300126 chr6:32967070-32973839 6769 126 1 256 39 6 147 867 BRD2,HLA-DMA,HLA-DOA,HLA-DMB
SE_02_005300084 chr6:34223141-34247674 24533 84 5 786 38 5 181 1430 HMGA1,C6ORF1
SE_02_005300153 chr6:73515172-73524817 9645 153 3 314 32 3 107 658 EEF1A1
SE_02_005300115 chr6:73564888-73587985 23097 115 4 690 72 2 18 0 EEF1A1
SE_02_005300267 chr7:100501643-100516898 15255 267 4 353 23 1 11 0 C7ORF61,C7ORF51,TSC22D4,AGFG2
SE_02_005300029 chr7:101084643-101140167 55524 29 14 1697 208 9 92 2620 TRIM56,SERPINE1,VGF,AP1S1,C7ORF52
SE_02_005300252 chr7:129824405-129854756 30351 252 4 747 58 0 61 693 UBE2H,MIR96,MIR183,MIR182
SE_02_005300027 chr7:130834452-130856700 22248 27 1 627 23 6 12 0 MIR29A,MIR29B1
SE_02_005300004 chr7:130878365-130929598 51233 4 1 1512 100 12 140 365 LOC646329,MIR29A,MIR29B1
SE_02_005300106 chr7:130929649-130947063 17414 106 1 381 33 0 66 159 FLJ43663,LOC646329
SE_02_005300143 chr7:130952320-130965247 12927 143 1 340 22 0 17 0 FLJ43663,LOC646329
SE_02_005300145 chr7:131006079-131015007 8928 145 1 205 7 2 15 0 FLJ43663
SE_02_005300141 chr7:131604028-131634504 30476 141 3 978 32 0 71 0 PODXL
SE_02_005300124 chr7:157276519-157319260 42741 124 12 1451 118 1 0 0 DNAJB6
SE_02_005300021 chr7:22559365-22615884 56519 21 11 1417 51 5 87 491 MGC87042
SE_02_005300019 chr7:22646119-22733520 87401 19 21 2606 216 17 184 671 IL6
SE_02_005300216 chr7:22853479-22860830 7351 216 1 217 30 1 4 42 SNORD93,TOMM7
SE_02_005300178 chr7:434353-478323 43970 178 8 1771 49 0 94 0 PDGFA,FLJ44511
SE_02_005300081 chr7:5417520-5430509 12989 81 1 391 3 0 262 846 TNRC18
SE_02_005300247 chr7:73798928-73852589 53661 247 8 1321 176 3 70 1773 CLDN4,WBSCR27,WBSCR28,CLDN3
SE_02_005300016 chr8:102786503-102812364 25861 16 3 656 55 1 94 670 AZIN1
SE_02_005300213 chr8:11848346-11892557 44211 213 7 1959 235 6 30 891 CTSB,FDFT1
SE_02_005300017 chr8:127199542-127228596 29054 17 2 840 9 2 111 377 POU5F1B
SE_02_005300147 chr8:127243403-127268218 24815 147 4 726 2 1 39 0 POU5F1B
SE_02_005300051 chr8:127291299-127309175 17876 51 3 529 2 2 127 0 POU5F1B
SE_02_005300154 chr8:127802643-127832718 30075 154 5 842 33 3 23 0 PVT1,MIR1204
SE_02_005300075 chr8:143925091-143972234 47143 75 5 1632 161 9 382 3817 PLEC,MIR661,GRINA,SPATC1,PARP10
SE_02_005300233 chr8:23327481-23357826 30345 233 6 1081 150 3 80 631 LOXL2,R3HCC1
SE_02_005300187 chr8:23530341-23549607 19266 187 4 694 118 3 40 0 SLC25A37
SE_02_005300237 chr8:41146533-41159884 13351 237 2 451 21 0 27 0 SFRP1
SE_02_005300148 chr8:6527903-6561670 33767 148 9 1507 30 10 79 40 MCPH1,ANGPT2
SE_02_005300163 chr8:6575597-6603340 27743 163 5 1231 7 2 70 0 MCPH1,ANGPT2
SE_02_005300002 chr8:93836074-93975063 138989 2 21 3931 252 12 357 733 PDP1
SE_02_005300111 chr9:112011313-112075339 64026 111 12 1658 107 9 108 391 MIR3134,SUSD1
SE_02_005300092 chr9:124251163-124311235 60072 92 9 1798 132 5 295 694 NEK6,LOC100129034
SE_02_005300177 chr9:129132771-129147031 14260 177 3 532 60 1 50 878 PPP2R4,CRAT,IER5L
SE_02_005300128 chr9:129166067-129183392 17325 128 5 460 35 0 231 700 IER5L
SE_02_005300222 chr9:129223954-129262633 38679 222 7 1168 126 16 86 0 IER5L
SE_02_005300063 chr9:129313965-129353842 39877 63 7 1240 112 6 39 1049 C9ORF106
SE_02_005300117 chr9:129400936-129418741 17805 117 6 585 18 1 90 0 C9ORF106
SE_02_005300025 chr9:129450702-129507750 57048 25 10 1673 99 0 156 874 C9ORF50
SE_02_005300036 chr9:129549039-129612496 63457 36 16 1929 137 7 81 684 C9ORF50,ASB6,METTL11A
SE_02_005300118 chr9:136881376-136905533 24157 118 4 808 70 6 26 680 TRAF2,C8G,C9ORF172,FBXW5,PHPT1,MAMDC4,LCN12,EDF1
SE_02_005300133 chrX:40002798-40016254 13456 133 1 196 0 0 303 634 BCOR
SE_02_005300038 chrX:40062950-40110877 47927 38 9 818 1 0 1005 1320 BCOR
SE_02_005300015 chrX:40129937-40191461 61524 15 7 1148 1 1 730 144 BCOR
SE_02_005300022 chrX:45696195-45811346 115151 22 26 2266 61 4 302 250 MIR221,MIR222

SE annotation visualization


Information description of sample and annotation

Case ID: Name:GSM1415884
Input ID: Name:GSM1415888
Common SNP: dbSNP
eQTL: GTEx, HaploReg v4.1, PancanQTL
Risk SNP : GWAS Catalog, GWASdb v2.0
TFBS: TFBS Conserved of UCSC
CRISPR/Cas9 target site: CRISPR Targets of UCSC

Software and parameters used

Read Mapping: bowtie(v2.4.4) -p 10 -x -S -U
Peak Calling: macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb