SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000205922
Gene: ONECUT3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr19:1753506-1780988 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_087300045 chr19:1718672-1776507 Sample_02_0873 Colon HCT116_siGLIS2.1-5FU 45 14 2016 35 2 147 603 ONECUT3,LOC100288123,ATP8B3,MIR1909
SE_02_050600085 chr19:1720343-1796278 Sample_02_0506 Esophagus TE5_1 85 27 2728 64 2 189 2124 ONECUT3,ATP8B3,LOC100288123,MIR1909
SE_02_051700087 chr19:1720343-1796278 Sample_02_0517 Esophagus TE5 87 27 2728 64 2 189 2124 ONECUT3,ATP8B3,LOC100288123,MIR1909
SE_02_127600293 chr19:1725342-1767520 Sample_02_1276 Prostate PC3_GSK126 293 17 1475 23 1 125 424 ONECUT3,ATP8B3,MIR1909
SE_02_087200171 chr19:1738375-1766835 Sample_02_0872 Colon HCT116_siCtrl-5FU 171 9 970 14 1 100 424 ONECUT3,ATP8B3,MIR1909
SE_02_103000263 chr19:1741418-1766834 Sample_02_1030 Colon DKO 263 12 835 13 1 100 424 ONECUT3,ATP8B3,MIR1909
SE_02_102900069 chr19:1742749-1774038 Sample_02_1029 Colon HCT116 69 12 1018 16 2 104 424 ONECUT3,LOC100288123,ATP8B3,MIR1909
SE_02_042700212 chr19:1743853-1756848 Sample_02_0427 Colon HCT116_shPAF1 212 2 373 5 1 75 424 ONECUT3
SE_02_029400521 chr19:1743905-1775462 Sample_02_0294 Pancreatic L3-6_DMSO 521 5 1006 15 2 117 530 ONECUT3,LOC100288123,MIR1909,ATP8B3
SE_02_051600053 chr19:1743978-1796280 Sample_02_0516 Esophagus KYSE70 53 19 1793 46 2 168 2126 ONECUT3,ATP8B3,LOC100288123,MIR1909
SE_02_032400232 chr19:1743988-1753219 Sample_02_0324 Colon SW48 232 1 292 4 1 6 0 ONECUT3
SE_02_087100072 chr19:1744034-1756133 Sample_02_0871 Colon HCT116_GLIS2.2-DMSO 72 5 346 4 1 75 424 ONECUT3
SE_02_050500053 chr19:1744047-1796280 Sample_02_0505 Esophagus KYSE70_1 53 19 1792 46 2 168 2126 ONECUT3,ATP8B3,LOC100288123,MIR1909
SE_02_127700349 chr19:1744066-1759234 Sample_02_1277 Prostate PC3_COMBO 349 11 431 6 1 94 424 ONECUT3
SE_02_029300089 chr19:1744107-1775870 Sample_02_0293 Pancreatic L3-6_4SC-202 89 4 1009 15 2 120 603 ONECUT3,LOC100288123,MIR1909,ATP8B3
SE_01_011400073 chr19:1744177-1775046 Sample_01_0114 Colon HCT116_encode 73 11 986 15 2 104 440 ONECUT3,LOC100288123,ATP8B3,MIR1909
SE_02_087000099 chr19:1744218-1750702 Sample_02_0870 Colon HCT116_GLIS2.1-DMSO 99 5 203 3 1 6 0 ONECUT3
SE_02_045800221 chr19:1744341-1750611 Sample_02_0458 Colon HCT116 DMSO 221 5 195 3 1 6 0 ONECUT3
SE_02_042600122 chr19:1744351-1773971 Sample_02_0426 Colon HCT116_NONT 122 4 938 15 1 104 424 ONECUT3,LOC100288123,MIR1909,ATP8B3
SE_02_035200169 chr19:1744480-1775139 Sample_02_0352 Colon HCT116 169 5 977 15 2 104 467 ONECUT3,LOC100288123,MIR1909,ATP8B3
SE_02_158400272 chr19:1744536-1750301 Sample_02_1584 Brain U87 GBM_Mock 272 1 178 3 1 6 0 ONECUT3,ATP8B3
SE_02_015800575 chr19:1744638-1750008 Sample_02_0158 Brain U87_EGFRvIII_erlotinib 575 1 168 3 1 6 0 ONECUT3
SE_02_002100270 chr19:1744654-1758452 Sample_02_0021 Colon V429 270 2 380 6 1 77 424 ONECUT3
SE_02_035800068 chr19:1744656-1758689 Sample_02_0358 Colon LS180 68 1 385 6 1 77 424 ONECUT3
SE_02_043500181 chr19:1744682-1762590 Sample_02_0435 Kidney HEK293A_WT-MEF2B_DMSO_6h 181 3 524 8 1 98 424 ONECUT3,ATP8B3
SE_01_003400253 chr19:1744701-1774188 Sample_01_0034 Colon HCT116 253 4 933 15 2 104 424 ONECUT3,LOC100288123,MIR1909,ATP8B3
SE_02_014100143 chr19:1744717-1751121 Sample_02_0141 Colon HCT116_Heterozygous_ARID1A-KO 143 2 193 3 1 6 0 ONECUT3
SE_02_024000064 chr19:1744726-1794997 Sample_02_0240 Colon V429_2 64 9 1708 46 2 159 1994 ATP8B3,ONECUT3,LOC100288123,MIR1909
SE_02_043600249 chr19:1744729-1767715 Sample_02_0436 Kidney HEK293A_empty-vector_DMSO_6h 249 4 720 12 1 104 424 ONECUT3,ATP8B3,MIR1909
SE_02_014300129 chr19:1744762-1755725 Sample_02_0143 Colon HCT116_Parental 129 3 297 4 1 73 424 ONECUT3
SE_02_088400782 chr19:1744803-1751265 Sample_02_0884 Colon LoVo 782 2 198 3 1 6 0 ONECUT3
SE_02_124700104 chr19:1744821-1756025 Sample_02_1247 Colon HCT116_IFN-beta_1h 104 3 308 4 1 75 424 ONECUT3
SE_02_085900409 chr19:1744842-1773825 Sample_02_0859 Prostate PC3 409 6 910 15 1 104 424 ONECUT3,LOC100288123,ATP8B3,MIR1909
SE_02_122800866 chr19:1744846-1749527 Sample_02_1228 Mammary gland MDA-MB-231_2 866 4 141 3 1 6 0 ONECUT3,ATP8B3
SE_02_087400111 chr19:1744862-1774254 Sample_02_0874 Colon HCT116_siGLIS2.2-5FU 111 7 930 15 2 104 424 ONECUT3,LOC100288123,ATP8B3,MIR1909
SE_02_055300359 chr19:1744873-1767431 Sample_02_0553 Other HSSY2 shCt 359 13 709 12 1 103 424 ONECUT3,ATP8B3,MIR1909
SE_02_133100549 chr19:1744906-1767945 Sample_02_1331 Blood Molm13_CTRL 549 4 723 12 1 104 424 ONECUT3,ATP8B3,MIR1909
SE_02_049401064 chr19:1744929-1756588 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 1064 3 320 4 1 75 424 ONECUT3
SE_02_004600436 chr19:1744931-1756547 Sample_02_0046 Embryo endodermal CyT49_ES_D10 436 3 319 4 1 75 424 ONECUT3
SE_02_132100772 chr19:1744974-1749217 Sample_02_1321 Connective Tissue HT1080_FUS-DDIT3 772 2 134 3 1 6 0 ONECUT3
SE_02_002900047 chr19:1745042-1755992 Sample_02_0029 Colorectal LS174T 47 4 300 4 1 74 424 ONECUT3
SE_02_141100035 chr19:1745086-1757116 Sample_02_1411 Colon KM12C 35 6 328 5 1 75 424 ONECUT3
SE_02_071100796 chr19:1745141-1758702 Sample_02_0711 Pancreas hN35_organoid 796 9 370 6 1 77 424 ONECUT3
SE_02_050300374 chr19:1745203-1750582 Sample_02_0503 Esophagus KYSE140_1 374 2 162 3 1 6 0 ONECUT3,ATP8B3
SE_02_051500373 chr19:1745204-1750583 Sample_02_0515 Esophagus KYSE140 373 2 162 3 1 6 0 ONECUT3,ATP8B3
SE_02_132000764 chr19:1745269-1749761 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 764 1 136 3 1 6 0 ONECUT3,ATP8B3
SE_02_153900554 chr19:1745313-1789044 Sample_02_1539 Nasopharyngeal C666-1 554 13 1474 38 2 133 1356 ONECUT3,ATP8B3,LOC100288123,MIR1909
SE_02_132200860 chr19:1745406-1749366 Sample_02_1322 Connective Tissue HT1080_WT 860 2 125 3 1 6 0 ONECUT3
SE_02_049101142 chr19:1745435-1749826 Sample_02_0491 Pharyng Detroit 562-Control 1142 2 137 3 1 6 0 ONECUT3,ATP8B3
SE_02_113100683 chr19:1745477-1756307 Sample_02_1131 Pancreas T3M4 wt 683 6 300 4 1 75 424 ONECUT3
SE_02_102500561 chr19:1745512-1750877 Sample_02_1025 Esophagus KYSE150 561 1 167 3 1 6 0 ONECUT3,ATP8B3
SE_02_071000883 chr19:1745555-1758203 Sample_02_0710 Pancreas hN34_organoid 883 9 352 6 1 77 424 ONECUT3
SE_02_064502351 chr19:1745738-1750163 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 2351 2 144 3 0 6 0 ONECUT3,ATP8B3
SE_02_154000595 chr19:1746010-1750809 Sample_02_1540 Nasopharyngeal HK1 595 1 145 3 0 6 0 ONECUT3,ATP8B3
SE_02_094800297 chr19:1746024-1750327 Sample_02_0948 Pharyng Detroit562 297 1 134 3 0 6 0 ONECUT3
SE_02_039601570 chr19:1746158-1751294 Sample_02_0396 Skin NHEK-D 1570 1 164 3 0 6 0 ONECUT3
SE_02_082601802 chr19:1746371-1765226 Sample_02_0826 Stomach gastric tumor 1802 9 562 9 0 100 424 ONECUT3,ATP8B3
SE_02_019100118 chr19:1746373-1755984 Sample_02_0191 Stomach SNU719 118 3 266 4 0 74 424 ONECUT3
SE_02_125400919 chr19:1746400-1750540 Sample_02_1254 Bladder Bladder tumor Basal1 919 1 132 3 0 6 0 ONECUT3
SE_02_130500201 chr19:1746411-1756394 Sample_02_1305 Pancreas Gemcitabine resistant L3.6pl 201 2 275 4 0 75 424 ONECUT3
SE_02_072500443 chr19:1746413-1749023 Sample_02_0725 Mammary gland MCF10A-YAP5SA_ctrl 443 3 88 3 0 6 0 ONECUT3,ATP8B3
SE_02_072600433 chr19:1746452-1748977 Sample_02_0726 Mammary gland MCF10A-YAP5SA_plusDOX 433 3 86 3 0 6 0 ONECUT3,ATP8B3
SE_02_064601393 chr19:1746508-1750341 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 1393 2 123 3 0 6 0 ONECUT3
SE_02_116300181 chr19:1746543-1764063 Sample_02_1163 Embryonic kidney HEK293 no dox 181 5 517 8 0 99 424 ONECUT3,ATP8B3
SE_02_141200011 chr19:1746759-1750078 Sample_02_1412 Liver KM12SM 11 4 107 2 0 6 0 ONECUT3
SE_02_010600367 chr19:1747893-1775779 Sample_02_0106 Skin NHEK_M 367 5 879 14 1 115 603 ONECUT3,LOC100288123,MIR1909,ATP8B3
SE_02_021500298 chr19:1765620-1780889 Sample_02_0215 Skin NHEK_siGRHL3 298 3 520 7 1 25 179 ONECUT3,LOC100288123,MIR1909,ATP8B3
Genomic distribution of SEs associated with ONECUT3
Genome Browser

The strength of the tissue affected by the gene

Expression of ONECUT3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)