Sample overview
| Species: | Human |
| Biosample type: | Cell line |
| Tissue type: | Liver |
| Data source: | NCBI GEO/SRA |
| Biosample name: | KM12SM |
| Sample ID: | Sample_02_1412 |
| SE ID | SE Region | Size | Rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_141200016 | chr1:16895759-16905084 |
9325 | 16 | 3 | 365 | 34 | 0 | 0 | 64 | RNVU1-18,CROCC |
| SE_02_141200009 | chr10:72321202-72332440 |
11238 | 9 | 2 | 340 | 23 | 0 | 19 | 0 | DNAJB12,DDIT4 |
| SE_02_141200018 | chr12:121800416-121801454 |
1038 | 18 | 3 | 31 | 4 | 0 | 10 | 18 | LINC01089,RHOF,SETD1B |
| SE_02_141200006 | chr12:52144311-52149458 |
5147 | 6 | 8 | 185 | 12 | 0 | 12 | 0 | KRT80 |
| SE_02_141200007 | chr14:37583358-37588451 |
5093 | 7 | 6 | 106 | 9 | 0 | 46 | 0 | FOXA1,TTC6 |
| SE_02_141200008 | chr15:100712421-100720889 |
8468 | 8 | 4 | 288 | 9 | 1 | 16 | 0 | ASB7 |
| SE_02_141200015 | chr17:16287126-16297848 |
10722 | 15 | 2 | 242 | 24 | 2 | 3 | 0 | PIGL,MIR1288 |
| SE_02_141200002 | chr17:43231486-43246470 |
14984 | 2 | 6 | 0 | 0 | 0 | 0 | 0 | RNU2-1,TMEM106A,LINC00854 |
| SE_02_141200001 | chr17:43266904-43301366 |
34462 | 1 | 15 | 0 | 0 | 0 | 0 | 0 | RNU2-1,LINC00854 |
| SE_02_141200012 | chr17:5825924-5834137 |
8213 | 12 | 2 | 230 | 13 | 3 | 6 | 0 | LOC339166 |
| SE_02_141200017 | chr17:79988883-79993293 |
4410 | 17 | 3 | 126 | 7 | 0 | 11 | 0 | TBC1D16,CCDC40 |
| SE_02_141200004 | chr18:22171343-22178344 |
7001 | 4 | 3 | 150 | 0 | 0 | 70 | 448 | GATA6,GATA6-AS1 |
| SE_02_141200011 | chr19:1746759-1750078 |
3319 | 11 | 4 | 107 | 2 | 0 | 6 | 0 | ONECUT3 |
| SE_02_141200019 | chr2:43000659-43006227 |
5568 | 19 | 3 | 220 | 6 | 1 | 16 | 0 | LOC102723854 |
| SE_02_141200005 | chr20:25226840-25238569 |
11729 | 5 | 3 | 364 | 48 | 0 | 16 | 22 | LOC101926889,PYGB,ENTPD6 |
| SE_02_141200010 | chr22:46069548-46074891 |
5343 | 10 | 5 | 133 | 6 | 0 | 35 | 0 | PRR34,MIR3619,LINC00899,PRR34-AS1,MIRLET7BHG,MIRLET7A3,MIR4763,MIRLET7B |
| SE_02_141200020 | chr6:43924469-43926408 |
1939 | 20 | 2 | 57 | 3 | 0 | 2 | 0 | LINC01512 |
| SE_02_141200014 | chr7:130994139-130999533 |
5394 | 14 | 5 | 132 | 8 | 1 | 45 | 0 | LINC-PINT,LOC100506860 |
| SE_02_141200003 | chr7:5419592-5427808 |
8216 | 3 | 2 | 241 | 2 | 0 | 230 | 846 | TNRC18 |
| SE_02_141200013 | chr8:29736709-29739806 |
3097 | 13 | 4 | 76 | 2 | 0 | 15 | 0 | LINC00589,LOC101929450 |
SE annotation visualization
Information description of sample and annotation
| Case ID: | Name:GSM4910067 |
| Input ID: | Name:GSM4910066 |
| Common SNP: | dbSNP |
| eQTL: | GTEx, HaploReg v4.1, PancanQTL |
| Risk SNP : | GWAS Catalog, GWASdb v2.0 |
| TFBS: | TFBS Conserved of UCSC |
| CRISPR/Cas9 target site: | CRISPR Targets of UCSC |
Software and parameters used
| Read Mapping: | bowtie(v2.4.4) -p 10 -x -S -U |
| Peak Calling: | macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto |
| Stitching Distance: | 12.5 kb |
| TSS Exclusive Zone: | +/- 2 kb |