Sample overview


Search result

SE ID SE Region Size Rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_124700098 chr1:156103635-156130389 26754 98 8 650 65 4 209 594 LMNA,LAMTOR2,RAB25,UBQLN4,SEMA4A,MEX3A
SE_02_124700142 chr1:16139804-16156913 17109 142 4 466 36 0 151 455 EPHA2
SE_02_124700064 chr1:172885198-172935099 49901 64 13 1173 61 8 67 0 TNFSF18
SE_02_124700168 chr1:66258012-66272701 14689 168 5 387 12 2 128 52 PDE4B
SE_02_124700144 chr1:66292790-66302489 9699 144 3 273 14 3 37 0 PDE4B
SE_02_124700022 chr1:66315550-66359787 44237 22 12 1073 15 4 243 218 PDE4B
SE_02_124700149 chr1:68377550-68389532 11982 149 5 373 33 0 11 0 RPE65,DEPDC1-AS1
SE_02_124700013 chr1:8019857-8099895 80038 13 19 1966 155 4 222 157 ERRFI1
SE_02_124700138 chr1:8116777-8138558 21781 138 4 726 99 1 44 0 LOC102724539
SE_02_124700031 chr1:8154243-8213159 58916 31 11 1797 84 2 56 0 LOC102724539
SE_02_124700039 chr1:84141954-84178506 36552 39 9 754 18 1 52 132 PRKACB
SE_02_124700178 chr1:8874015-8901027 27012 178 5 804 81 0 20 387 ENO1,ENO1-AS1,CA6,MIR6728
SE_02_124700066 chr1:94299054-94330105 31051 66 8 797 31 1 108 0 ARHGAP29
SE_02_124700135 chr10:100004353-100010651 6298 135 1 159 32 0 13 146 DNMBP
SE_02_124700070 chr10:100362551-100375906 13355 70 7 329 32 0 15 433 OLMALINC,SCD,PKD2L1
SE_02_124700133 chr10:110395678-110417515 21837 133 9 638 38 2 78 0 DUSP5
SE_02_124700020 chr10:112360120-112405908 45788 20 11 1268 113 5 111 465 ACSL5,GUCY2GP,VTI1A,ZDHHC6
SE_02_124700003 chr10:112475224-112549592 74368 3 23 1808 15 2 320 102 VTI1A,ZDHHC6
SE_02_124700085 chr10:112950281-112960152 9871 85 3 242 9 0 238 369 TCF7L2
SE_02_124700137 chr10:28106049-28125396 19347 137 6 497 31 2 36 190 MPP7,ARMC4
SE_02_124700073 chr10:31928296-31947845 19549 73 12 473 32 2 52 170 ARHGAP12
SE_02_124700100 chr10:70558124-70595461 37337 100 11 1135 94 6 30 522 PALD1,PRF1
SE_02_124700059 chr10:93458265-93482771 24506 59 10 735 119 5 63 146 MYOF,CEP55
SE_02_124700077 chr10:99774651-99786588 11937 77 4 249 23 2 3 122 ABCC2,CUTC,COX15
SE_02_124700035 chr11:10624425-10671004 46579 35 12 1398 144 7 142 819 MRVI1
SE_02_124700051 chr11:118908888-118930287 21399 51 7 498 37 2 375 365 BCL9L,MIR4492,CXCR5,UPK2,FOXR1
SE_02_124700154 chr11:122154793-122161276 6483 154 1 186 0 1 27 28 MIR100HG,MIR100,MIRLET7A2,BLID
SE_02_124700136 chr11:122185887-122191599 5712 136 1 152 1 0 17 0 MIR100HG,MIR100,MIRLET7A2
SE_02_124700054 chr11:65471637-65508968 37331 54 9 1066 111 4 50 963 MALAT1,SCYL1,LTBP3,NEAT1,MIR612
SE_02_124700175 chr11:65539330-65560982 21652 175 5 518 33 0 290 2967 LTBP3,MALAT1,SCYL1,EHBP1L1,SSSCA1,FAM89B,SSSCA1-AS1,KCNK7
SE_02_124700087 chr11:65890614-65919059 28445 87 6 729 90 3 267 1446 FOSL1,CCDC85B,C11ORF68,MUS81,SART1,TSGA10IP,CTSW,EFEMP2,DRAP1,FIBP,CFL1
SE_02_124700164 chr11:69294184-69302885 8701 164 3 299 15 1 51 603 MYEOV
SE_02_124700162 chr11:69636685-69644371 7686 162 2 214 5 1 97 472 CCND1,ORAOV1
SE_02_124700109 chr12:108833680-108858337 24657 109 5 687 24 1 29 236 SSH1,MIR619,DAO
SE_02_124700041 chr12:116492961-116530053 37092 41 9 1090 74 1 15 0 MAP1LC3B2,LINC00173
SE_02_124700116 chr12:12716530-12727069 10539 116 2 311 20 2 148 598 CDKN1B,APOLD1,MIR613,GPR19
SE_02_124700089 chr12:12869810-12903813 34003 89 9 1040 55 2 54 383 RPL13AP20,GPRC5A,MIR614,GPRC5D
SE_02_124700124 chr12:31730979-31757625 26646 124 9 745 66 0 0 0 H3F3C,AMN1
SE_02_124700049 chr12:46429705-46476015 46310 49 9 1138 90 1 103 0 LOC100288798
SE_02_124700083 chr12:46547945-46558503 10558 83 2 235 14 2 24 0 LOC100288798
SE_02_124700143 chr12:52143419-52152974 9555 143 5 309 19 0 23 0 OR7E47P,KRT80
SE_02_124700176 chr12:53365311-53374054 8743 176 2 218 17 0 4 0 SP1,SP7,AAAS,AMHR2
SE_02_124700108 chr12:6363043-6377365 14322 108 4 416 24 1 50 707 LTBR,SCNN1A,TNFRSF1A
SE_02_124700097 chr12:65426317-65436905 10588 97 4 284 14 1 23 0 MSRB3
SE_02_124700036 chr12:65487794-65538925 51131 36 12 1422 49 6 139 0 LOC100507065
SE_02_124700038 chr12:65629808-65660101 30293 38 7 835 36 0 122 0 LOC100507065
SE_02_124700139 chr12:65719105-65730131 11026 139 3 291 1 3 26 0 LOC100507065
SE_02_124700058 chr12:65818615-65838897 20282 58 8 460 7 3 122 651 RPSAP52,HMGA2,LOC100129940
SE_02_124700028 chr12:75622612-75668375 45763 28 14 1261 125 4 133 0 KRR1
SE_02_124700010 chr12:75694668-75788080 93412 10 30 2643 95 7 199 0 KRR1
SE_02_124700128 chr12:75877044-75910492 33448 128 10 924 9 5 43 0 PHLDA1
SE_02_124700105 chr12:75932840-75960963 28123 105 10 683 18 2 98 0 PHLDA1
SE_02_124700007 chr12:88920096-88971775 51679 7 13 1158 28 5 177 0 LOC728084
SE_02_124700155 chr14:68781008-68797088 16080 155 8 485 15 6 256 1034 ZFP36L1
SE_02_124700126 chr14:76946977-76963099 16122 126 8 423 33 0 91 0 IRF2BPL
SE_02_124700121 chr15:100712279-100732797 20518 121 6 716 24 1 51 0 ASB7
SE_02_124700177 chr15:92800640-92832495 31855 177 7 987 22 0 45 0 ASB9P1,LINC01578
SE_02_124700156 chr16:69049400-69078239 28839 156 11 655 59 2 31 0 TANGO6,HAS3
SE_02_124700024 chr16:69391815-69426603 34788 24 10 850 73 0 95 123 CYB5B,TERF2,TMED6
SE_02_124700118 chr17:15944783-15966669 21886 118 7 698 61 0 37 254 ADORA2B,ZSWIM7,TTC19
SE_02_124700078 chr17:17822357-17850714 28357 78 6 743 78 5 70 1390 TOM1L2,SREBF1,SMCR5,MIR6777,MIR33B
SE_02_124700151 chr17:43231345-43252459 21114 151 4 0 0 0 0 0 RNU2-1,TMEM106A,LINC00854
SE_02_124700095 chr17:43266725-43300992 34267 95 10 0 0 0 0 0 RNU2-1,LINC00854
SE_02_124700068 chr17:50049716-50065669 15953 68 3 431 45 5 147 1094 ITGA3,LOC284080,PDK2
SE_02_124700125 chr17:57943056-57953823 10767 125 2 271 15 0 34 0 CUEDC1,VEZF1
SE_02_124700053 chr17:58388603-58428925 40322 53 14 821 72 9 211 445 RNF43,HSF5,SUPT4H1
SE_02_124700023 chr17:59753259-59789249 35990 23 8 724 72 3 81 71 VMP1,PTRH2
SE_02_124700017 chr17:59827425-59847784 20359 17 3 449 33 0 90 260 MIR21,VMP1,RPS6KB1,TUBD1
SE_02_124700019 chr17:64650614-64733362 82748 19 17 2103 124 2 200 265 SMURF2,LOC146880,MIR6080
SE_02_124700106 chr17:72370694-72423731 53037 106 18 1460 51 7 256 287 LINC00673
SE_02_124700166 chr17:78313618-78353879 40261 166 6 1245 11 2 197 0 LOC100996291,LOC101928674,PGS1,SOCS3
SE_02_124700101 chr17:81386506-81400320 13814 101 4 437 38 0 223 158 BAHCC1,LOC100130370,MIR4740
SE_02_124700114 chr17:81511673-81520094 8421 114 3 355 38 0 65 347 ACTG1,FSCN2,FAAP100,NPLOC4
SE_02_124700163 chr17:81867402-81872663 5261 163 1 177 9 0 50 1056 ARHGDIA,ANAPC11,FAM195B,ALYREF,PCYT2,NPB,PPP1R27,SIRT7,P4HB
SE_02_124700173 chr17:82205988-82218526 12538 173 3 371 36 1 0 235 CCDC57,SLC16A3,MIR6787
SE_02_124700167 chr18:3446304-3454691 8387 167 1 243 8 1 144 657 TGIF1,GAPLINC
SE_02_124700012 chr18:3592524-3630968 38444 12 11 1028 57 5 81 771 DLGAP1,DLGAP1-AS2,DLGAP1-AS1
SE_02_124700060 chr18:3648272-3668045 19773 60 5 589 29 3 40 26 DLGAP1,DLGAP1-AS2
SE_02_124700119 chr18:70356695-70382178 25483 119 7 771 37 4 24 0 LOC101060542,LOC101927481
SE_02_124700074 chr19:1239595-1267117 27522 74 6 1012 26 1 283 2283 ATP5D,MIDN,C19ORF24,CIRBP,CIRBP-AS1,STK11,CBARP,EFNA2
SE_02_124700170 chr19:12777697-12794666 16969 170 4 388 32 1 305 517 JUNB,MIR5684,BEST2,RTBDN,ASNA1,HOOK2,RNASEH2A,PRDX2,C19ORF43,MAST1
SE_02_124700075 chr19:13142726-13172557 29831 75 9 768 52 2 110 1279 IER2,STX10,LYL1,TRMT1,NACC1
SE_02_124700067 chr19:13838797-13865944 27147 67 7 730 46 1 179 0 NANOS3,C19ORF57,LOC284454,MIR23A,ZSWIM4,MIR27A,MIR24-2,MIR181D,MIR181C,CC2D1A
SE_02_124700110 chr19:15827412-15838342 10930 110 5 388 76 0 0 522 UCA1,OR10H5,CYP4F24P,LOC102724279,OR10H1
SE_02_124700104 chr19:1744821-1756025 11204 104 3 308 4 1 75 424 ONECUT3
SE_02_124700141 chr19:2028855-2062532 33677 141 10 1185 56 2 115 2093 MKNK2,IZUMO4,MOB3A,BTBD2
SE_02_124700145 chr19:39397924-39410875 12951 145 4 310 16 0 185 1159 ZFP36,MIR4530,MED29,PLEKHG2,SUPT5H,RPS16,PAF1
SE_02_124700065 chr19:43753480-43785452 31972 65 6 927 105 4 149 1312 SMG9,KCNN4,LYPD5,ZNF283,IRGC
SE_02_124700072 chr2:110099940-110116909 16969 72 3 429 32 1 31 288 MALL,MIR4267,MIR4436B1
SE_02_124700158 chr2:156332486-156343869 11383 158 6 213 4 1 233 505 NR4A2
SE_02_124700079 chr2:168189540-168221626 32086 79 14 922 65 4 87 0 STK39
SE_02_124700016 chr2:181766048-181814744 48696 16 8 1377 38 0 144 0 SSFA2
SE_02_124700084 chr2:181876204-181901161 24957 84 7 559 1 1 110 580 SSFA2
SE_02_124700115 chr2:181946367-181958569 12202 115 2 295 2 1 24 0 PPP1R1C
SE_02_124700052 chr2:219684586-219708146 23560 52 8 603 46 5 51 0 SLC4A3
SE_02_124700050 chr2:223522773-223577531 54758 50 11 1457 43 3 154 0 SCG2
SE_02_124700157 chr2:223695781-223701907 6126 157 3 184 6 2 19 0 SCG2
SE_02_124700045 chr2:226113486-226138545 25059 45 5 689 15 3 73 0 LOC646736
SE_02_124700055 chr2:226151120-226192647 41527 55 19 1065 74 4 124 216 LOC646736
SE_02_124700030 chr2:226644579-226675638 31059 30 11 899 6 0 118 48 MIR5702
SE_02_124700153 chr2:226753708-226773439 19731 153 6 480 14 2 71 0 IRS1
SE_02_124700134 chr2:231661952-231681951 19999 134 8 615 13 2 56 0 PTMA,MIR1244-2
SE_02_124700107 chr20:31559673-31575186 15513 107 6 432 37 2 79 763 HM13,HM13-AS1,MCTS2P,ID1,MIR3193
SE_02_124700076 chr20:31591875-31612841 20966 76 8 689 60 4 155 400 MIR3193,ID1,COX4I2,MCTS2P,HM13-AS1
SE_02_124700047 chr20:31693817-31724044 30227 47 11 689 52 4 236 373 ABALON,BCL2L1,TPX2
SE_02_124700096 chr20:50724059-50746555 22496 96 12 598 46 0 100 236 PARD6B,BCAS4,FAM65C
SE_02_124700034 chr20:54121612-54177905 56293 34 11 1701 38 10 99 880 CYP24A1,PFDN4
SE_02_124700152 chr20:62703587-62712795 9208 152 4 346 26 0 45 354 NTSR1,SLCO4A1-AS1
SE_02_124700092 chr20:62732773-62742044 9271 92 4 374 42 0 9 0 NTSR1,LINC00659
SE_02_124700159 chr20:63681402-63699984 18582 159 4 898 41 6 66 2885 RTEL1,RTEL1-TNFRSF6B,TNFRSF6B,ARFRP1,ZGPAT,LIME1,STMN3,SLC2A4RG
SE_02_124700090 chr22:24196792-24211220 14428 90 3 396 37 0 0 0 POM121L9P,GGT5,SUSD2
SE_02_124700025 chr22:30195216-30258518 63302 25 17 1757 152 15 399 1238 LIF,OSM,GATSL3
SE_02_124700161 chr22:37186401-37199455 13054 161 2 414 60 4 28 844 C1QTNF6,SSTR3,IL2RB,RAC2
SE_02_124700062 chr22:37304919-37332667 27748 62 6 865 54 4 66 1162 CYTH4,LOC100506271,RAC2
SE_02_124700103 chr22:37742072-37753630 11558 103 4 336 27 1 53 300 TRIOBP,MIR5096
SE_02_124700069 chr22:46065905-46082457 16552 69 7 460 17 1 128 0 PRR34,MIR3619,LINC00899,PRR34-AS1,MIRLET7BHG,MIRLET7A3,MIR4763,MIRLET7B
SE_02_124700081 chr3:110566551-110586101 19550 81 8 537 40 0 24 0 PVRL3-AS1
SE_02_124700021 chr3:111900839-111938434 37595 21 11 988 98 4 97 606 PHLDB2,ABHD10
SE_02_124700056 chr3:114642020-114656292 14272 56 5 344 5 4 77 0 ZBTB20
SE_02_124700040 chr3:139297929-139329341 31412 40 7 869 51 8 0 0 MRPS22
SE_02_124700004 chr3:93470323-93470840 517 4 1 0 0 0 0 0 PROS1
SE_02_124700026 chr3:98535244-98586326 51082 26 11 1375 120 6 112 224 CPOX,OR5K2,GPR15,CLDND1
SE_02_124700148 chr3:98892344-98901724 9380 148 5 231 24 0 4 202 DCBLD2
SE_02_124700027 chr3:98953580-98986125 32545 27 10 778 109 0 75 0 DCBLD2
SE_02_124700009 chr4:101101578-101165907 64329 9 16 1619 58 7 166 31 PPP3CA,MIR8066
SE_02_124700140 chr4:112167684-112174796 7112 140 2 153 7 0 10 0 C4ORF32
SE_02_124700093 chr4:11613702-11651819 38117 93 11 1205 49 2 114 0 HS3ST1
SE_02_124700127 chr4:168479592-168490953 11361 127 6 246 16 1 17 100 DDX60L,PALLD
SE_02_124700037 chr4:168530849-168589894 59045 37 17 1620 95 7 0 0 PALLD
SE_02_124700048 chr4:186803881-186847506 43625 48 11 1092 95 2 140 0 FAT1
SE_02_124700001 chr4:30743837-30880568 136731 1 32 3777 88 7 750 0 PCDH7
SE_02_124700129 chr4:30900443-30921769 21326 129 6 636 33 2 91 45 PCDH7
SE_02_124700043 chr4:30937557-30963682 26125 43 13 704 31 2 111 0 PCDH7,LOC102723778
SE_02_124700033 chr4:31016899-31069620 52721 33 17 1582 0 4 188 0 PCDH7,LOC102723778
SE_02_124700094 chr4:74362268-74376610 14342 94 5 435 8 1 57 131 EREG
SE_02_124700113 chr4:74532143-74546430 14287 113 5 405 31 6 63 0 AREG
SE_02_124700005 chr4:74617651-74683551 65900 5 9 1908 29 4 84 0 BTC
SE_02_124700044 chr4:78533438-78570310 36872 44 8 1032 118 1 87 763 FRAS1,ANXA3
SE_02_124700117 chr5:115839653-115857530 17877 117 6 559 45 0 32 359 AP3S1,ATG12,CDO1
SE_02_124700082 chr5:142342620-142367680 25060 82 5 665 49 0 49 0 LOC101926941,SPRY4,SPRY4-IT1
SE_02_124700174 chr5:82968737-82985194 16457 174 7 472 28 3 21 0 SCARNA18
SE_02_124700099 chr6:129489046-129502688 13642 99 3 349 7 2 75 226 LAMA2,ARHGAP18
SE_02_124700120 chr6:129640955-129650086 9131 120 3 239 13 0 20 40 ARHGAP18
SE_02_124700071 chr6:144896348-144928866 32518 71 6 971 29 3 25 0 UTRN
SE_02_124700029 chr6:151035089-151085936 50847 29 12 1643 61 9 96 114 MTHFD1L,LOC102723831
SE_02_124700015 chr6:158686169-158742788 56619 15 13 1678 128 3 33 315 SYTL3,DYNLT1,MIR3918
SE_02_124700146 chr6:158849299-158869782 20483 146 4 532 35 2 36 128 OSTCP1,EZR,C6ORF99,EZR-AS1
SE_02_124700172 chr6:26118357-26127227 8870 172 2 316 43 14 52 227 HIST1H2AC,HIST1H2BC,HFE,HIST1H2BD,HIST1H1E,HIST1H1T,HIST1H4C
SE_02_124700091 chr6:34223431-34245645 22214 91 7 700 34 4 169 961 MIR6835,HMGA1,C6ORF1
SE_02_124700123 chr6:56708868-56731866 22998 123 11 592 35 1 13 0 DST
SE_02_124700061 chr7:116415735-116478001 62266 61 12 1443 145 13 114 205 CAV2,CAV1
SE_02_124700122 chr7:116510911-116526812 15901 122 2 413 52 3 69 471 CAV1,CAV2
SE_02_124700063 chr7:116670923-116717361 46438 63 11 1167 70 5 307 323 MET
SE_02_124700006 chr7:130879478-130924717 45239 6 11 1357 85 11 137 365 LOC100506860,LINC-PINT,MIR29A,MIR29B1
SE_02_124700011 chr7:130937218-131017086 79868 11 26 2021 108 5 152 249 LINC-PINT,LOC100506860
SE_02_124700132 chr7:27163114-27171799 8685 132 1 262 11 0 226 747 MIR196B,HOXA10,HOXA10-HOXA9,HOXA10-AS,HOXA9,HOXA11,HOXA-AS3,HOTTIP,HOXA-AS2,HOXA7,HOXA3,HOXA5,HOXA4,HOXA13,HOXA6,HOXA11-AS
SE_02_124700086 chr7:5419166-5429976 10810 86 3 324 3 0 243 846 TNRC18
SE_02_124700112 chr7:80271933-80281410 9477 112 2 222 7 1 36 0 LOC101927269
SE_02_124700131 chr8:125111186-125130658 19472 131 7 503 20 1 48 0 NSMCE2,KIAA0196
SE_02_124700130 chr8:125259792-125290640 30848 130 7 889 33 5 91 87 NSMCE2,TRIB1
SE_02_124700018 chr8:125643841-125702986 59145 18 17 1691 53 4 163 0 TRIB1
SE_02_124700032 chr8:127204956-127229617 24661 32 10 692 5 2 105 419 CCAT1,CASC21,CASC19
SE_02_124700057 chr8:143935979-143953987 18008 57 5 609 52 1 206 1630 PLEC,MIR661,PARP10,GRINA
SE_02_124700102 chr8:17836864-17856803 19939 102 4 860 110 1 56 0 FGL1,MTUS1
SE_02_124700169 chr8:61756086-61767746 11660 169 6 367 15 0 2 373 ASPH,MIR4470
SE_02_124700150 chr8:9004321-9016085 11764 150 2 556 43 1 20 48 ERI1,MIR4660
SE_02_124700002 chr8:93836530-93939012 102482 2 30 2826 173 9 334 733 PDP1,MIR378D2
SE_02_124700165 chr9:107210293-107224677 14384 165 3 460 2 1 46 0 RAD23B
SE_02_124700171 chr9:107239252-107249263 10011 171 5 263 26 1 21 0 RAD23B
SE_02_124700160 chr9:129166482-129178223 11741 160 4 293 25 0 184 639 IER5L
SE_02_124700042 chr9:129476239-129507374 31135 42 10 883 42 0 96 874 LINC00963
SE_02_124700080 chr9:129549933-129571662 21729 80 6 695 54 0 51 0 NTMT1,C9ORF50
SE_02_124700111 chr9:129587770-129611065 23295 111 8 673 44 5 17 0 NTMT1,C9ORF50,ASB6
SE_02_124700008 chr9:21551359-21594222 42863 8 8 1214 18 7 101 166 MIR31HG,MIR31
SE_02_124700014 chr9:21669510-21693921 24411 14 1 947 54 11 72 0 MTAP
SE_02_124700088 chr9:21770928-21790259 19331 88 6 721 65 24 54 0 MTAP
SE_02_124700046 chrUn_KI270467v1:1029-3874 2845 46 2 0 0 0 0 0
SE_02_124700147 chrX:40133081-40177275 44194 147 13 803 1 0 634 109 BCOR
SE_02_124700179 chrX:46316644-46331043 14399 179 7 301 10 0 44 141 LINC01186

SE annotation visualization


Information description of sample and annotation

Case ID: Name:GSM4443577
Input ID: Name:GSM4443581
Common SNP: dbSNP
eQTL: GTEx, HaploReg v4.1, PancanQTL
Risk SNP : GWAS Catalog, GWASdb v2.0
TFBS: TFBS Conserved of UCSC
CRISPR/Cas9 target site: CRISPR Targets of UCSC

Software and parameters used

Read Mapping: bowtie(v2.4.4) -p 10 -x -S -U
Peak Calling: macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb