SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000235531
Gene: MSC-AS1 Gene type: lncRNA
Strand: + External links:
Genomic region: chr8:71828167-72118393 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_157200070 chr8:71652162-71717508 Sample_02_1572 iPSCs FiPSC 70 28 1976 67 6 101 0 MSC-AS1
SE_02_101701001 chr8:71664905-71688388 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1001 5 836 27 2 15 0 MSC-AS1,RP11-1102P16.1,EYA1
SE_02_101600531 chr8:71666138-71688395 Sample_02_1016 Embryo H9_Mesendoderm_24h 531 5 790 26 2 15 0 MSC-AS1,RP11-1102P16.1,EYA1
SE_02_075200931 chr8:71666635-71688534 Sample_02_0752 Embryo ES-derived progenitors_DE_wild type 931 4 768 25 2 15 0 MSC-AS1,EYA1
SE_02_101500768 chr8:71666651-71697603 Sample_02_1015 Embryo H9_ Undifferentiated 768 5 1023 29 3 17 0 MSC-AS1,RP11-1102P16.1,EYA1
SE_02_075500691 chr8:71666684-71688765 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 691 8 776 26 2 15 0 MSC-AS1
SE_02_138500414 chr8:71667940-71697432 Sample_02_1385 Other iPSCs 414 8 981 28 3 17 0 MSC-AS1
SE_02_086000030 chr8:71669136-71698191 Sample_02_0860 iPSCs SAH_SMARCB1_K364del/+ 30 14 954 28 3 17 0 MSC-AS1,EYA1
SE_02_117200061 chr8:71669228-71698579 Sample_02_1172 Embryo H9 WT 61 5 963 29 3 17 0 MSC-AS1,RP11-1102P16.1
SE_02_145700008 chr8:71669481-71718620 Sample_02_1457 Embryo HUES8 WT 8 8 1505 48 5 82 0 MSC-AS1
SE_02_156700048 chr8:71669538-71717747 Sample_02_1567 iPSCs CiPSC 48 25 1483 48 5 82 0 MSC-AS1
SE_02_157000071 chr8:71669634-71717842 Sample_02_1570 iPSCs EiPSC 71 26 1481 48 5 82 0 MSC-AS1
SE_02_086100047 chr8:71669705-71683140 Sample_02_0861 iPSCs SAH_WT 47 11 497 23 1 3 0 MSC-AS1
SE_02_056000214 chr8:71669821-71681470 Sample_02_0560 iPSCs FX52_Cas9-inactive Tet1_CGG sgRNA 214 11 447 21 1 3 0 MSC-AS1
SE_02_055900534 chr8:71670531-71681137 Sample_02_0559 iPSCs FX52 iPSCs dC-T 534 5 411 19 1 3 0 MSC-AS1
SE_02_068100317 chr8:71671150-71687608 Sample_02_0681 Embryo H1 hESC-derived neural progenitor cells_Smad_72hr 317 10 569 20 2 15 0 MSC-AS1
SE_02_067700281 chr8:71671437-71681136 Sample_02_0677 Embryo H1 hESC-derived neural progenitor cells_Smad_6hr 281 11 375 17 0 3 0 MSC-AS1
SE_02_067600064 chr8:71671612-71700076 Sample_02_0676 Embryo H1 hESC-derived neural progenitor cells_Smad_3hr 64 21 903 25 2 18 0 MSC-AS1
SE_02_068000299 chr8:71671722-71683270 Sample_02_0680 Embryo H1 hESC-derived neural progenitor cells_Smad_48hr 299 10 430 18 0 3 0 MSC-AS1
SE_02_116000679 chr8:71671800-71679900 Sample_02_1160 Embryo H1_shLuc 679 4 311 15 0 2 0 MSC-AS1,EYA1
SE_02_067800335 chr8:71671876-71680181 Sample_02_0678 Embryo H1 hESC-derived neural progenitor cells_Smad_12hr 335 9 328 15 0 2 0 MSC-AS1
SE_02_074200463 chr8:71697059-71717350 Sample_02_0742 Embryo ESCs_day0 463 6 570 21 2 65 0 MSC-AS1
SE_02_117200873 chr8:71714531-71719255 Sample_02_1172 Embryo H9 WT 873 2 122 3 0 3 0 MSC-AS1
SE_01_011600093 chr8:71715250-71716986 Sample_01_0116 Embryo H1-hESC 93 3 49 2 0 1 0 MSC-AS1
SE_02_148900063 chr8:71820311-71843802 Sample_02_1489 Bone TC-106 63 7 756 38 3 22 415 MSC-AS1,MSC
SE_02_143200804 chr8:71826760-71861512 Sample_02_1432 Bone A673 STAG2 WT 804 11 968 78 7 77 622 MSC-AS1,MSC
SE_04_001000260 chr8:71827453-71859116 Sample_04_0010 Lung A549 TGFb 260 8 876 74 7 69 622 MSC-AS1,MSC
SE_02_107400073 chr8:71827578-71852806 Sample_02_1074 Lymphoma BC-1 73 6 727 62 5 65 622 MSC-AS1,MSC
SE_02_070200330 chr8:71827631-71844436 Sample_02_0702 Bone David_TC71 330 7 493 31 3 37 560 MSC-AS1,MSC
SE_02_139200257 chr8:71828148-71857520 Sample_02_1392 Peripheral blood Mac-2A_ALK- 257 9 820 71 6 65 622 MSC-AS1,MSC
SE_02_156000968 chr8:71828168-71859028 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 968 11 851 73 7 69 622 MSC-AS1,MSC
SE_02_137801419 chr8:71828173-71834312 Sample_02_1378 Pancreas Pancreatic_tumor_associated_fibroblasts_CAF08_untreated 1419 3 172 17 0 0 0 MSC,MSC-AS1
SE_02_156400165 chr8:71828246-71858040 Sample_02_1564 Gastrointestinal Stromal GIST-430 165 8 829 72 6 65 622 MSC-AS1,MSC
SE_02_094100134 chr8:71828284-71845196 Sample_02_0941 Brain T98G 134 4 494 32 3 40 622 MSC-AS1,MSC
SE_02_109800760 chr8:71828315-71850130 Sample_02_1098 Blood THP1_DMSO_noPMA 760 7 645 54 5 63 622 MSC-AS1,MSC
SE_02_045500691 chr8:71828349-71845065 Sample_02_0455 Th17 lymphocytes Th17-IL-10+ Day 5 691 5 492 32 3 40 622 MSC-AS1,MSC
SE_02_154600144 chr8:71828365-71858348 Sample_02_1546 Gastrointestinal Stromal GIST-430/654 144 7 836 72 7 68 622 MSC-AS1,MSC
SE_02_151600989 chr8:71828405-71834149 Sample_02_1516 Non-transformed mammary epithelial IMEC MYC 989 4 161 17 0 0 0 MSC,MSC-AS1
SE_02_045700611 chr8:71829032-71844600 Sample_02_0457 Th17 lymphocytes Th17-IL-10- Day 5 611 5 468 31 3 40 607 MSC-AS1,MSC
SE_02_149600148 chr8:71829090-71844526 Sample_02_1496 Other monocyte-derived dendritic cells_R848_24h 148 9 468 31 3 37 586 MSC-AS1,MSC
SE_02_137500935 chr8:71829759-71840720 Sample_02_1375 Pancreas Pancreatic_tumor_associated_fibroblasts_B0010A_untreated 935 5 330 16 1 7 0 MSC,MSC-AS1
SE_02_149400420 chr8:71829970-71843894 Sample_02_1494 Other monocyte-derived dendritic cells_0h 420 4 417 28 3 26 428 MSC-AS1,MSC
SE_02_149500202 chr8:71830070-71842466 Sample_02_1495 Other monocyte-derived dendritic cells_R848_1h 202 6 370 26 2 7 208 MSC,MSC-AS1
SE_01_011000916 chr8:71830445-71854953 Sample_01_0110 Aorta thoracic aorta_37y 916 11 698 63 6 65 622 MSC-AS1,MSC
SE_02_107500150 chr8:71831014-71854969 Sample_02_1075 Lymphoma BC-3 150 7 675 57 6 65 622 MSC-AS1,MSC
SE_02_138600552 chr8:71831626-71852249 Sample_02_1386 Peripheral blood Karpas-299_ALK+ 552 7 591 47 5 65 622 MSC-AS1,MSC
Genomic distribution of SEs associated with MSC-AS1
Genome Browser

The strength of the tissue affected by the gene

Expression of MSC-AS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)