Sample overview


Search result

SE ID SE Region Size Rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_011600078 chr1:144546487-144561125 14638 78 3 2 38 0 0 0 SRGAP2-AS1,RNVU1-15
SE_01_011600092 chr1:145465713-145466297 584 92 1 0 2 0 0 0 NBPF20
SE_01_011600096 chr1:146376496-146387480 10984 96 2 0 36 0 0 0 RNVU1-18,NUDT4P1
SE_01_011600027 chr1:150561544-150569226 7682 27 7 164 16 1 34 0 ADAMTSL4-AS1,FALEC,ADAMTSL4,MCL1,MIR4257
SE_01_011600086 chr1:156746344-156748110 1766 86 3 37 2 0 16 0 HDGF,CRABP2,RRNAD1,ISG20L2,PRCC,MRPL24
SE_01_011600090 chr1:15834496-15836307 1811 90 3 83 13 2 8 366 FLJ37453,SPEN,UQCRHL
SE_01_011600031 chr1:16666322-16667313 991 31 2 0 0 0 0 0 RNVU1-18,FAM231C,MST1P2,CROCCP2
SE_01_011600022 chr1:16740123-16741115 992 22 2 0 0 0 0 82 RNVU1-18,MST1L,ESPNP,FAM231A
SE_01_011600010 chr1:16895615-16905229 9614 10 4 391 36 0 0 64 RNVU1-18,CROCC
SE_01_011600081 chr1:204078502-204084492 5990 81 3 171 10 0 8 0 SOX13,LINC00303
SE_01_011600011 chr1:205294082-205313998 19916 11 5 535 39 2 128 1050 NUAK2,TMCC2,KLHDC8A
SE_01_011600079 chr1:212909620-212916234 6614 79 4 212 63 1 0 0 VASH2
SE_01_011600115 chr1:214439379-214447639 8260 115 2 207 16 1 11 0 PTPN14
SE_01_011600064 chr1:235669207-235675781 6574 64 6 165 11 2 0 0 LYST,MIR5096,GNG4
SE_01_011600072 chr1:24150706-24152118 1412 72 2 33 7 0 0 0 IL22RA1,LOC284632,MYOM3,IFNLR1
SE_01_011600044 chr1:26998307-27007984 9677 44 4 262 16 0 79 713 TRNP1,FAM46B,KDF1
SE_01_011600028 chr1:32754342-32761833 7491 28 5 186 3 0 64 1 KIAA1522
SE_01_011600094 chr1:44819924-44820405 481 94 1 57 3 0 0 67 PTCH2,SNORD38A,PLK3,RPS8,SNORD38B,BTBD19,SNORD55,BEST4,SNORD46,TCTEX1D4
SE_01_011600032 chr1:56528174-56545960 17786 32 4 486 18 1 156 60 PPAP2B
SE_01_011600018 chr1_KI270713v1_random:21473-22464 991 18 2 0 0 0 0 0 RNU1-1
SE_01_011600057 chr1_KI270765v1_alt:57712-72416 14704 57 3 0 0 0 0 0
SE_01_011600122 chr10:1309195-1311367 2172 122 4 79 4 0 5 0 ADARB2,LINC00200
SE_01_011600053 chr10:21281586-21293139 11553 53 3 314 6 0 51 0 RNU6-15P
SE_01_011600080 chr10:73965674-73967881 2207 80 3 51 6 0 18 0 VCL,C10ORF55
SE_01_011600049 chr10:93436005-93446437 10432 49 6 268 26 0 28 0 MYOF
SE_01_011600041 chr10:95229487-95231949 2462 41 2 70 6 0 0 163 ACSM6
SE_01_011600043 chr11:12862837-12866169 3332 43 4 72 2 0 55 98 TEAD1,LINC00958,RASSF10
SE_01_011600025 chr11:36104408-36111351 6943 25 6 196 3 1 13 0 LDLRAD3,MIR3973
SE_01_011600105 chr11:57637783-57639331 1548 105 2 26 2 0 31 176 SERPING1,ZDHHC5,YPEL4,MIR130A,CLP1
SE_01_011600062 chr11:57778039-57781824 3785 62 2 75 3 0 51 0 CTNND1,TMX2-CTNND1,BTBD18,C11ORF31
SE_01_011600099 chr11:62551564-62553590 2026 99 4 53 3 0 18 0 AHNAK,EEF1G,TUT1,MTA2,MIR6747
SE_01_011600009 chr11:65486953-65500570 13617 9 4 430 27 3 11 347 MALAT1,SCYL1,MIR612
SE_01_011600101 chr11:88301471-88309190 7719 101 4 208 29 0 2 18 CTSC
SE_01_011600038 chr12:121576356-121583352 6996 38 3 161 9 0 155 396 KDM2B,ORAI1
SE_01_011600054 chr12:121800794-121802369 1575 54 1 40 4 0 18 95 LINC01089,RHOF,SETD1B
SE_01_011600123 chr12:124917453-124921519 4066 123 2 108 3 0 2 0 UBC,MIR5188
SE_01_011600050 chr12:13087843-13101687 13844 50 3 350 15 1 79 404 GSG1,FAM234B
SE_01_011600014 chr12:14256913-14261373 4460 14 5 127 9 2 17 0 ATF7IP
SE_01_011600047 chr12:31362127-31371492 9365 47 3 272 25 2 0 234 FAM60A,FLJ13224
SE_01_011600059 chr12:31385748-31387859 2111 59 3 40 5 0 0 236 DENND5B,FAM60A
SE_01_011600091 chr12:71946815-71949028 2213 91 3 51 1 0 19 0 TPH2,TBC1D15
SE_01_011600095 chr12:79546024-79548637 2613 95 5 77 3 0 7 0 MIR1252
SE_01_011600056 chr12:9909291-9911991 2700 56 4 103 6 0 0 0 CLEC2A,KLRF2,CLEC2B,LOC100506159,CLEC12A
SE_01_011600089 chr13:27251260-27252612 1352 89 1 63 4 0 5 80 RPL21,SNORA27,LINC00412,RASL11A,SNORD102
SE_01_011600048 chr14:21534283-21543789 9506 48 3 327 7 1 60 135 SALL2,OR10G3,METTL3
SE_01_011600073 chr14:23537653-23539317 1664 73 2 35 4 1 13 0 THTPA,ZFHX2,JPH4,AP1G2,LOC102724814
SE_01_011600045 chr14:34546460-34556703 10243 45 3 226 20 0 3 0 RNVU1-18,EAPP,SNX6
SE_01_011600067 chr14:74325918-74327584 1666 67 2 35 0 0 14 0 ABCD4,VRTN
SE_01_011600097 chr14:75258459-75259759 1300 97 2 28 1 0 52 0 FOS,LINC01220
SE_01_011600107 chr14:77085475-77088989 3514 107 4 75 4 2 21 35 LOC283575,CIPC,LOC102724190
SE_01_011600100 chr15:26235042-26243506 8464 100 3 262 1 1 19 0 LINC00929,GABRB3
SE_01_011600055 chr15:41564028-41569095 5067 55 3 128 18 1 51 480 TYRO3,RPAP1
SE_01_011600071 chr15:64634108-64636101 1993 71 1 32 1 0 16 0 ZNF609,OAZ2
SE_01_011600125 chr15:64699526-64700975 1449 125 2 33 2 0 26 0 OAZ2
SE_01_011600108 chr15:64807235-64809362 2127 108 3 64 12 1 5 0 PIF1,PLEKHO2,MIR1272,RBPMS2
SE_01_011600084 chr15:90400752-90414904 14152 84 4 415 48 1 39 0 IQGAP1,ZNF774
SE_01_011600029 chr15:92809374-92831755 22381 29 3 682 13 0 23 0 ASB9P1
SE_01_011600103 chr16:3007842-3009890 2048 103 4 58 4 0 3 0 LOC100128770,PKMYT1,MMP25-AS1,THOC6,CCDC64B,CLDN9,MMP25,LOC101929613,TNFRSF12A,CLDN6,PAQR4,KREMEN2,HCFC1R1,LINC00514
SE_01_011600033 chr16:89994570-89996206 1636 33 1 87 8 0 0 229 AFG3L1P,CENPBD1,DBNDD1,GAS8,DEF8,GAS8-AS1
SE_01_011600015 chr17:43240081-43252409 12328 15 5 0 0 0 0 0 RNU2-1,TMEM106A,LINC00854
SE_01_011600006 chr17:43266755-43300858 34103 6 10 0 0 0 0 0 RNU2-1,LINC00854
SE_01_011600042 chr17:43361290-43369454 8164 42 4 332 54 3 0 0 ARL4D,LINC00910
SE_01_011600023 chr17_GL000205v2_random:87259-90464 3205 23 5 0 0 0 0 0 MGC70870
SE_01_011600016 chr19:13152076-13165567 13491 16 7 358 31 1 93 519 IER2,STX10,LYL1,TRMT1,NACC1
SE_01_011600082 chr19:13846734-13848153 1419 82 2 30 3 0 32 0 NANOS3,LOC284454,MIR23A,MIR27A,MIR24-2,MIR181D,MIR181C
SE_01_011600127 chr19:38003257-38004605 1348 127 1 28 3 0 20 0 SIPA1L3
SE_01_011600021 chr19:38682943-38693601 10658 21 5 286 42 2 42 0 ACTN4
SE_01_011600119 chr19:39402373-39404280 1907 119 4 37 2 0 44 0 ZFP36,PLEKHG2,SUPT5H,RPS16,PAF1,MED29,MIR4530
SE_01_011600112 chr19:47109619-47111986 2367 112 2 71 0 0 46 6 ZC3H4,SAE1
SE_01_011600113 chr2:132267449-132268276 827 113 2 25 0 0 0 0 MIR663B,ANKRD30BL,ZNF806,GPR39
SE_01_011600024 chr2:231604210-231621554 17344 24 7 464 45 0 86 0 C2ORF57
SE_01_011600019 chr2:231662068-231681769 19701 19 6 602 12 2 56 0 PTMA,MIR1244-2
SE_01_011600065 chr2:32916142-32916572 430 65 1 2 0 0 0 0 LINC00486,LTBP1,LOC100271832
SE_01_011600087 chr2:47695281-47698860 3579 87 4 106 2 0 0 0 MSH6
SE_01_011600034 chr2:63613306-63615900 2594 34 3 53 5 0 0 0 MDH1,WDPCP
SE_01_011600116 chr2:85255330-85256705 1375 116 1 50 5 0 17 0 TCF7L1,TGOLN2
SE_01_011600118 chr20:35262992-35264288 1296 118 2 33 5 0 0 114 MMP24,EIF6,FAM83C-AS1,FAM83C,MMP24-AS1
SE_01_011600051 chr20:47319717-47321724 2007 51 2 64 0 0 1 204 ZMYND8,LOC100131496
SE_01_011600008 chr20:47348816-47369104 20288 8 6 553 3 4 134 732 ZMYND8,LOC100131496
SE_01_011600106 chr20:53736866-53741123 4257 106 5 102 0 1 25 0 SUMO1P1
SE_01_011600066 chr20:61436039-61438130 2091 66 2 67 2 4 15 0 CDH4
SE_01_011600085 chr21:33362045-33367887 5842 85 3 141 20 1 0 0 IFNAR1,IFNGR2
SE_01_011600026 chr21:6368859-6371714 2855 26 5 0 0 0 0 0 CBS
SE_01_011600004 chr21:8236325-8237129 804 4 1 0 0 0 0 0 RNA28S5,MIR6724-1,MIR3687-1,MIR3648-1,RNA5-8S5,RNA18S5
SE_01_011600002 chr21:8418727-8419645 918 2 1 0 0 0 0 0 LOC100507412,RNA45S5
SE_01_011600005 chr21:8463299-8464224 925 5 1 0 0 0 0 0 RNA45S5
SE_01_011600117 chr22:23241883-23244518 2635 117 4 107 6 0 0 0 BCR,FBXW4P1
SE_01_011600058 chr22:31339560-31344565 5005 58 3 136 8 0 58 452 PATZ1,PIK3IP1-AS1,LINC01521,PIK3IP1
SE_01_011600037 chr22:36328750-36333278 4528 37 4 130 6 1 30 0 MYH9,MIR6819
SE_01_011600003 chr22_KI270733v1_random:152721-153685 964 3 1 0 0 0 0 0
SE_01_011600077 chr4:122783668-122797729 14061 77 3 397 36 0 0 0 FGF2
SE_01_011600017 chr5:10012-11394 1382 17 2 47 0 0 0 0 PLEKHG4B,CCDC127
SE_01_011600020 chr5:141838529-141850436 11907 20 5 293 15 1 125 0 PCDH1,LOC729080
SE_01_011600052 chr5:147869189-147875130 5941 52 4 347 55 0 0 0 SCGB3A2,C5ORF46,SPINK1
SE_01_011600121 chr5:1514219-1516145 1926 121 4 74 6 1 0 0 LPCAT1,MIR6075
SE_01_011600030 chr5:160160382-160168276 7894 30 5 238 9 2 18 0 FABP6,PWWP2A
SE_01_011600040 chr5:16736468-16743273 6805 40 6 198 0 1 18 171 MYO10,FAM134B
SE_01_011600001 chr5:49609845-49646360 36515 1 22 0 2 0 0 0 EMB
SE_01_011600036 chr5:80245097-80258121 13024 36 3 387 25 0 32 161 SERINC5,LOC644936
SE_01_011600013 chr6:104953030-104959070 6040 13 3 158 4 2 73 167 LIN28B,LINC00577
SE_01_011600046 chr6:24980514-24986153 5639 46 4 131 10 2 14 0 FAM65B
SE_01_011600060 chr6:2989270-2990718 1448 60 1 43 8 0 0 144 LINC01011,HTATSF1P2,SERPINB6,NQO2
SE_01_011600076 chr6:35484983-35487118 2135 76 3 62 2 0 20 158 TEAD3,FANCE,RPL10A,TULP1,MIR7111
SE_01_011600098 chr6:35731070-35740514 9444 98 4 286 18 0 19 888 ARMC12,LOC285847,CLPSL2,FKBP5,CLPSL1
SE_01_011600012 chr6:37125626-37141428 15802 12 5 431 29 1 64 0 PIM1
SE_01_011600110 chr6:42782149-42783995 1846 110 3 35 3 0 16 26 TBCC,GLTSCR1L
SE_01_011600111 chr6:73579487-73581299 1812 111 3 46 6 0 7 0 EEF1A1
SE_01_011600120 chr7:129949032-129950855 1823 120 3 46 2 0 65 0 UBE2H
SE_01_011600102 chr7:131604369-131606079 1710 102 3 51 0 0 5 0 PODXL
SE_01_011600075 chr7:150400474-150403117 2643 75 2 68 3 0 0 95 REPIN1,ZNF775,LOC728743,LINC00996,GIMAP8
SE_01_011600069 chr7:20120740-20126888 6148 69 4 291 17 0 0 0 LOC101927668,MACC1-AS1
SE_01_011600124 chr7:66491285-66493964 2679 124 3 91 9 0 0 0 LINC00174
SE_01_011600083 chr7:71464606-71473080 8474 83 2 251 1 0 7 0 WBSCR17,MIR3914-1
SE_01_011600061 chr7:73742458-73743936 1478 61 2 44 5 0 26 0 ABHD11,MIR4284,STX1A,ABHD11-AS1,CLDN3
SE_01_011600104 chr7:99943594-99945349 1755 104 3 47 5 0 0 0 TRIM4,GJC3,AZGP1P1,AZGP1
SE_01_011600039 chr8:127809570-127823864 14294 39 4 382 18 1 11 0 MIR1204
SE_01_011600074 chr8:38439532-38441871 2339 74 2 56 3 0 23 94 FGFR1
SE_01_011600093 chr8:71715250-71716986 1736 93 3 49 2 0 1 0 MSC-AS1
SE_01_011600035 chr8:79119142-79124863 5721 35 8 154 1 0 0 0 IL7,LOC101241902
SE_01_011600088 chr9:26975091-26976943 1852 88 4 80 7 0 0 0 IFT74,IFT74-AS1,LRRC19,PLAA
SE_01_011600007 chrUn_GL000220v1:134745-144218 9473 7 2 0 0 0 0 0
SE_01_011600109 chrUn_KI270303v1:366-1526 1160 109 2 0 0 0 0 0
SE_01_011600063 chrUn_KI270304v1:3-2141 2138 63 3 0 0 0 0 0
SE_01_011600068 chrUn_KI270310v1:45-1192 1147 68 2 0 0 0 0 0
SE_01_011600070 chrUn_KI270411v1:805-2389 1584 70 2 0 0 0 0 0
SE_01_011600126 chrX:13197953-13202530 4577 126 4 88 7 0 2 0 GS1-600G8.3,LINC01203
SE_01_011600114 chrX:47316006-47322207 6201 114 4 126 17 0 0 0 ZNF157,USP11

SE annotation visualization


Information description of sample and annotation

Case ID: Name:ENCSR000ANP
Input ID: Name:ENCSR000AMI
Common SNP: dbSNP
eQTL: GTEx, HaploReg v4.1, PancanQTL
Risk SNP : GWAS Catalog, GWASdb v2.0
TFBS: TFBS Conserved of UCSC
CRISPR/Cas9 target site: CRISPR Targets of UCSC

Software and parameters used

Read Mapping: bowtie(v2.4.4) -p 10 -x -S -U
Peak Calling: macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb