SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000142173
Gene: COL6A2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr21:46098112-46132848 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_044400010 chr21:46004652-46096031 Sample_02_0444 Bone osteosarcoma tumor P10 10 19 3197 227 8 35 110 COL6A1,LOC101928796,COL6A2
SE_02_017300054 chr21:46013415-46144181 Sample_02_0173 Lung IMR-90_senescent 54 20 5215 411 10 208 4500 FTCD,COL6A2,COL6A1,C21ORF56
SE_01_007800311 chr21:46019523-46068353 Sample_01_0078 Heart left ventricle heart-left-ventricle 311 7 1718 117 6 25 0 COL6A2,COL6A1
SE_02_024400176 chr21:46019535-46065989 Sample_02_0244 Foreskin foreskin_D11 176 7 1636 112 6 15 0 COL6A2,COL6A1
SE_02_156000183 chr21:46019790-46111072 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 183 19 3128 225 6 36 164 COL6A2,COL6A1,LOC101928796,FTCD
SE_01_008900203 chr21:46020060-46068484 Sample_01_0089 Transverse colon transverse-colon 203 7 1714 117 6 25 0 COL6A2,COL6A1
SE_01_010900301 chr21:46020179-46067759 Sample_01_0109 Colon transverse colon_54y 301 10 1674 114 5 25 0 COL6A1,LOC101928796,COL6A2
SE_00_005600562 chr21:46020781-46067850 Sample_00_0056 Sigmoid colon sigmoid colon 3y 562 32 1658 113 5 25 0 COL6A1,LOC101928796,COL6A2
SE_01_008300287 chr21:46020979-46068489 Sample_01_0083 Sigmoid colon sigmoid-colon 287 6 1686 114 6 25 0 COL6A2,COL6A1
SE_01_007400292 chr21:46021021-46068448 Sample_01_0074 Esophagus muscularis mucosa esophagus-muscularis-mucosa 292 9 1682 114 6 25 0 COL6A2,COL6A1
SE_02_024300149 chr21:46021116-46101967 Sample_02_0243 Foreskin foreskin_HFFs 149 13 2853 198 6 36 164 COL6A2,COL6A1
SE_01_008500839 chr21:46021130-46068278 Sample_01_0085 Stomach stomach 839 9 1670 112 5 25 0 COL6A2,COL6A1
SE_01_009100051 chr21:46021199-46121842 Sample_01_0091 Uterus uterus 51 11 3622 255 6 107 2001 COL6A2,FTCD,COL6A1
SE_00_004300111 chr21:46021200-46068717 Sample_00_0043 Stomach stomach_96d 111 9 1691 112 6 25 0 COL6A2,COL6A1
SE_01_006600020 chr21:46021231-46128686 Sample_01_0066 Smooth muscle smooth-muscle-cell 20 17 4061 301 8 148 2834 COL6A2,FTCD,COL6A1
SE_01_007500169 chr21:46021303-46111433 Sample_01_0075 Esophagus squamous epithelium esophagus-squamous-epithelium 169 15 3097 222 6 36 206 COL6A2,FTCD,COL6A1
SE_00_001100814 chr21:46021312-46068139 Sample_00_0011 Esophagus esophagus 814 8 1651 111 5 25 0 COL6A2,COL6A1
SE_00_002500488 chr21:46021333-46068407 Sample_00_0025 Muscle of leg muscle-of-leg 488 8 1659 111 5 25 0 COL6A2,COL6A1
SE_01_003700368 chr21:46021343-46100128 Sample_01_0037 Liver hepatocyte 368 12 2795 197 6 36 164 COL6A2,COL6A1
SE_00_003500355 chr21:46021356-46067887 Sample_00_0035 Sigmoid colon sigmoid-colon 355 10 1638 110 5 25 0 COL6A2,COL6A1
SE_01_008800908 chr21:46021366-46068297 Sample_01_0088 Tibial nerve tibial-nerve 908 7 1656 111 5 25 0 COL6A2,COL6A1
SE_01_009200038 chr21:46021393-46144293 Sample_01_0092 Vagina vagina 38 18 5010 380 9 208 4500 FTCD,COL6A2,COL6A1,C21ORF56
SE_02_044500079 chr21:46021404-46101111 Sample_02_0445 Lung lung metastasis from primary osteosarcoma tumor M10 79 17 2816 197 5 36 164 COL6A2,COL6A1,LOC101928796
SE_02_088901105 chr21:46021432-46067845 Sample_02_0889 Heart left ventricle_LV1183 1105 12 1628 110 4 25 0 COL6A1,LOC101928796,COL6A2
SE_02_155900039 chr21:46021478-46111101 Sample_02_1559 Gastrointestinal Stromal GIST-8_PDGFRA e18 39 22 3073 221 5 36 164 COL6A2,COL6A1,LOC101928796,FTCD
SE_02_061400077 chr21:46021480-46093583 Sample_02_0614 Liposarcoma MLPS_T2 77 21 2607 166 5 35 0 COL6A1,LOC101928796,COL6A2
SE_02_155800260 chr21:46021484-46067884 Sample_02_1558 Gastrointestinal Stromal GIST-7_PDGFRA e18 260 13 1633 110 4 25 0 COL6A1,LOC101928796,COL6A2
SE_02_001900305 chr21:46021496-46085180 Sample_02_0019 Embryo Neural crest cells 305 12 2384 151 5 32 0 COL6A2,COL6A1
SE_02_156600046 chr21:46021518-46122988 Sample_02_1566 Dermal Dermal fibroblast 46 24 3680 261 5 110 2236 COL6A2,COL6A1,LOC101928796,FTCD
SE_01_009900626 chr21:46021523-46067533 Sample_01_0099 Colon transverse colon 626 21 1617 109 4 25 0 COL6A1,LOC101928796,COL6A2
SE_02_156500118 chr21:46021535-46068082 Sample_02_1565 Gastrointestinal Stromal Gastrointestinal stromal tumor 118 14 1643 111 4 25 0 COL6A1,LOC101928796,COL6A2
SE_02_026300311 chr21:46021542-46101490 Sample_02_0263 Osteoblastic hFOB_undifferentiated 311 13 2823 197 5 36 164 COL6A2,COL6A1
SE_02_090800936 chr21:46021573-46079183 Sample_02_0908 Heart left ventricle_DCM_LV1262 936 23 2083 127 5 25 0 COL6A1,LOC101928796,COL6A2
SE_02_137600072 chr21:46021598-46101208 Sample_02_1376 Pancreas Pancreatic_tumor_associated_fibroblasts_B011C_untreated 72 36 2815 197 5 36 164 COL6A2,COL6A1,LOC101928796
SE_02_060500095 chr21:46021601-46101705 Sample_02_0605 Skin Skin Fibroblast_DMSO 95 20 2830 197 5 36 164 COL6A2,COL6A1,LOC101928796
SE_02_155200049 chr21:46021625-46128741 Sample_02_1552 HMSCs hMSC ATCC SCRC-4000 49 31 4050 301 7 148 2838 COL6A2,COL6A1,LOC101928796,FTCD
SE_01_007300119 chr21:46021638-46131598 Sample_01_0073 Coronary artery coronary-artery 119 15 4251 315 7 163 3502 COL6A2,FTCD,COL6A1
SE_02_081600152 chr21:46021658-46100355 Sample_02_0816 Ovary Clear cell ovarian cancer 152 29 2797 197 5 36 164 COL6A2,COL6A1,LOC101928796
SE_02_090601212 chr21:46021695-46068064 Sample_02_0906 Heart left ventricle_DCM_LV1072 1212 11 1640 111 4 25 0 COL6A1,LOC101928796,COL6A2
SE_02_091301008 chr21:46021707-46068211 Sample_02_0913 Heart left ventricle_DCM_LV1304 1008 15 1647 111 4 25 0 COL6A1,LOC101928796,COL6A2
SE_02_091500748 chr21:46021711-46067712 Sample_02_0915 Heart left ventricle_DCM_LV1371 748 14 1620 109 4 25 0 COL6A1,LOC101928796,COL6A2
SE_02_142800044 chr21:46021719-46122599 Sample_02_1428 Shoulder fibroblast_316 44 24 3650 259 5 109 2159 COL6A2,COL6A1,LOC101928796,FTCD
SE_02_090000714 chr21:46021724-46067731 Sample_02_0900 Heart left ventricle_LV1452 714 19 1619 109 4 25 0 COL6A1,LOC101928796,COL6A2
SE_02_063700023 chr21:46021783-46101842 Sample_02_0637 Fibroblast fibroblast_WT_GM07492 23 29 2828 197 5 36 164 COL6A2,COL6A1,LOC101928796
SE_00_004600929 chr21:46021910-46067620 Sample_00_0046 Heart right ventricle_34y 929 23 1613 109 4 25 0 COL6A1,LOC101928796,COL6A2
SE_02_090900867 chr21:46021945-46067865 Sample_02_0909 Heart left ventricle_DCM_LV1264 867 15 1622 110 4 25 0 COL6A1,LOC101928796,COL6A2
SE_02_091800883 chr21:46021986-46068073 Sample_02_0918 Heart left ventricle_DCM_LV1437 883 15 1633 111 4 25 0 COL6A1,LOC101928796,COL6A2
SE_02_044300363 chr21:46022064-46066772 Sample_02_0443 Bone MG63 363 19 1586 108 4 20 0 COL6A1,LOC101928796,COL6A2
SE_02_088600977 chr21:46022120-46101826 Sample_02_0886 Skin foreskin_ p63KLF4 977 20 2818 197 5 36 164 COL6A2,COL6A1,LOC101928796
SE_02_086800061 chr21:46022145-46103574 Sample_02_0868 Bone marrow Bone marrow derived hMSC_d10 61 38 2848 201 5 36 164 COL6A2,COL6A1,LOC101928796
SE_02_112800238 chr21:46022170-46067772 Sample_02_1128 Adipose visceral adipose_CTL_HCTR10 238 16 1607 109 4 25 0 COL6A1,LOC101928796,COL6A2
SE_02_142500031 chr21:46022202-46100545 Sample_02_1425 Shoulder fibroblast_384 31 23 2789 197 5 36 164 COL6A2,COL6A1,LOC101928796
SE_02_060600097 chr21:46022208-46101346 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 97 18 2801 197 5 36 164 COL6A2,COL6A1,LOC101928796
SE_02_137700022 chr21:46022290-46144395 Sample_02_1377 Pancreas Pancreatic_tumor_associated_fibroblasts_BF1_untreated 22 40 4990 380 8 208 4500 FTCD,COL6A2,COL6A1,LOC101928796,SPATC1L
SE_02_137500079 chr21:46022298-46109564 Sample_02_1375 Pancreas Pancreatic_tumor_associated_fibroblasts_B0010A_untreated 79 32 2998 218 5 36 164 COL6A2,COL6A1,LOC101928796,FTCD
SE_02_090701141 chr21:46022377-46067710 Sample_02_0907 Heart left ventricle_DCM_LV1223 1141 17 1603 109 4 25 0 COL6A1,LOC101928796,COL6A2
SE_02_090401472 chr21:46022440-46067957 Sample_02_0904 Heart left ventricle_DCM_LV1028 1472 16 1609 109 3 25 0 COL6A1,LOC101928796,COL6A2
SE_02_112900387 chr21:46022854-46067841 Sample_02_1129 Adipose visceral adipose_CTL_HCTR13 387 17 1587 107 2 25 0 COL6A1,LOC101928796,COL6A2
SE_02_008800514 chr21:46023060-46067311 Sample_02_0088 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_SGA_cycle_0 514 9 1566 105 2 25 0 COL6A2,COL6A1
SE_02_047400296 chr21:46023145-46101530 Sample_02_0474 Fibroblast umbilical cord Fibroblast 296 20 2775 193 3 36 164 COL6A2,COL6A1
SE_02_143800114 chr21:46023576-46124833 Sample_02_1438 Liver LSEC 114 22 3718 268 3 111 2378 COL6A2,COL6A1,FTCD
SE_02_143700130 chr21:46023837-46133774 Sample_02_1437 Liver LSEC-TNF 130 25 4381 322 5 202 3835 COL6A2,COL6A1,FTCD
SE_02_086700031 chr21:46023964-46123183 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 31 36 3616 255 3 110 2270 COL6A2,COL6A1,FTCD
SE_02_143600246 chr21:46023988-46067730 Sample_02_1436 Liver LSEC-Ctrl 246 12 1552 102 2 25 0 COL6A1,COL6A2
SE_02_017200147 chr21:46024059-46153997 Sample_02_0172 Lung IMR-90_quiescent 147 18 5308 402 9 252 5503 FTCD,COL6A2,COL6A1,C21ORF56
SE_01_001800239 chr21:46024398-46101898 Sample_01_0018 Submandibular Salivary Gland ACC112 239 10 2754 190 3 36 164 COL6A2,COL6A1
SE_01_005600182 chr21:46024416-46107072 Sample_01_0056 Bone osteoblast 182 14 2861 203 3 36 164 COL6A2,FTCD,COL6A1
SE_02_017100077 chr21:46024461-46101916 Sample_02_0171 Lung IMR-90_proliferating 77 8 2751 190 3 36 164 COL6A2,COL6A1
SE_02_088000624 chr21:46024559-46066224 Sample_02_0880 Ovary SVOG3e cells_noDox_transduced_V5-FOXL2_WT 624 9 1489 98 2 20 0 COL6A1,COL6A2
SE_02_157100255 chr21:46024579-46104711 Sample_02_1571 Fibroblast Fibroblast cells 255 19 2805 197 3 36 164 COL6A2,COL6A1
SE_02_049800143 chr21:46024623-46067530 Sample_02_0498 Fetal lung IMR90 Senescent_1 143 20 1530 101 2 25 0 COL6A1,COL6A2
SE_02_011000615 chr21:46024635-46105080 Sample_02_0110 Ovaries IOE11 615 9 2808 198 3 36 164 COL6A2,COL6A1
SE_02_087900779 chr21:46024723-46066184 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 779 8 1486 98 2 16 0 COL6A1,COL6A2
SE_01_001900275 chr21:46024730-46093470 Sample_01_0019 Brain and spinal cord astrocyte 275 9 2513 157 3 35 0 COL6A2,COL6A1
SE_02_127900291 chr21:46024847-46123110 Sample_02_1279 Bone Mesenchymal stem cells 291 20 3591 253 3 110 2262 COL6A2,COL6A1,FTCD
SE_02_049900266 chr21:46024948-46104889 Sample_02_0499 Fetal lung IMR90 IR Senescence 266 25 2799 197 3 36 164 COL6A2,COL6A1
SE_00_001500038 chr21:46024955-46101127 Sample_00_0015 Lung IMR-90 38 11 2721 189 3 36 164 COL6A2,COL6A1
SE_02_131100115 chr21:46024958-46107921 Sample_02_1311 Bone marrow HDMSCs 115 19 2879 207 3 36 164 COL6A2,COL6A1,FTCD
SE_02_141600059 chr21:46024975-46134302 Sample_02_1416 Brain SF9402 59 26 4387 321 5 202 3835 COL6A2,COL6A1,FTCD
SE_02_088100673 chr21:46025034-46066185 Sample_02_0881 Ovary SVOG3e cells_Dox_12h_transduced_V5-FOXL2_WT 673 10 1478 97 2 16 0 COL6A1,COL6A2
SE_02_005500076 chr21:46025047-46101389 Sample_02_0055 Lung IMR-90_Nutlin-3a 76 12 2724 188 3 36 164 COL6A2,COL6A1
SE_02_088200511 chr21:46025065-46067085 Sample_02_0882 Ovary SVOG3e_cells_noDox_transduced with V5-FOXL2 C134W 511 10 1508 100 2 25 0 COL6A1,COL6A2
SE_02_050000056 chr21:46025065-46121742 Sample_02_0500 Fetal lung IMR90_#2 56 37 3505 246 3 107 1980 COL6A2,COL6A1,FTCD
SE_02_087800834 chr21:46025066-46066156 Sample_02_0878 Ovary SVOG3e cells_noDox_control 834 9 1477 97 2 15 0 COL6A1,COL6A2
SE_02_017500150 chr21:46025069-46101021 Sample_02_0175 Lung IMR-90_Etoposide 150 20 2715 188 3 36 164 COL6A2,COL6A1
SE_02_063800110 chr21:46025086-46101489 Sample_02_0638 Fibroblast HGPS fibroblast_LMNA_AG11498 110 18 2725 188 3 36 164 COL6A2,COL6A1
SE_02_005400053 chr21:46025093-46101440 Sample_02_0054 Lung IMR-90_DMSO_1 53 11 2723 188 3 36 164 COL6A2,COL6A1
SE_02_131000058 chr21:46025120-46107778 Sample_02_1310 Bone marrow ASMSCs 58 17 2870 206 3 36 164 COL6A2,COL6A1,FTCD
SE_02_088300649 chr21:46025127-46066370 Sample_02_0883 Ovary SVOG3e_cells_Dox_12h_transduced with V5-FOXL2 C134W 649 9 1482 98 2 20 0 COL6A1,COL6A2
SE_02_142600074 chr21:46025132-46094222 Sample_02_1426 Shoulder fibroblast_341 74 22 2535 160 3 35 0 COL6A1,COL6A2
SE_02_142700022 chr21:46025150-46133626 Sample_02_1427 Shoulder fibroblast_343 22 26 4344 319 5 202 3835 COL6A2,COL6A1,FTCD
SE_01_002900041 chr21:46025153-46093959 Sample_01_0029 Lung fibroblast-of-lung 41 12 2527 159 3 35 0 COL6A2,COL6A1
SE_02_072700120 chr21:46025153-46101174 Sample_02_0727 Fetal lung IMR90_Etoposide 120 12 2718 188 3 36 164 COL6A2,COL6A1
SE_02_020900357 chr21:46025159-46093642 Sample_02_0209 Lung MRC-5_MRC5_1DPT 357 12 2511 157 3 35 0 COL6A2,COL6A1
SE_02_138000032 chr21:46025166-46109736 Sample_02_1380 Pancreas Pancreatic_tumor_associated_fibroblasts_CW1_untreated 32 34 2923 209 3 36 164 COL6A2,COL6A1,FTCD
SE_02_145100286 chr21:46025189-46093852 Sample_02_1451 Arter pulmonary arterial smooth muscle cells_PAH1_sictrl 286 13 2521 159 3 35 0 COL6A1,COL6A2
SE_02_119900008 chr21:46025198-46154113 Sample_02_1199 Brain GBM35 8 29 5285 400 9 252 5545 FTCD,COL6A2,COL6A1,SPATC1L
SE_02_086900011 chr21:46025244-46143995 Sample_02_0869 Fibroblast VH10_NO_UV 11 38 4900 370 6 208 4500 FTCD,COL6A2,COL6A1,SPATC1L
SE_02_141500055 chr21:46025284-46101247 Sample_02_1415 Brain DIPGIV 55 10 2715 187 3 36 164 COL6A2,COL6A1
SE_02_063600306 chr21:46025298-46101209 Sample_02_0636 Skin BJ5ta 306 15 2713 186 3 36 164 COL6A2,COL6A1
SE_01_011500727 chr21:46025349-46066961 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 727 10 1495 97 2 23 0 COL6A1,COL6A2,SPATC1L,YBEY
SE_01_011000175 chr21:46025375-46122270 Sample_01_0110 Aorta thoracic aorta_37y 175 26 3527 245 3 108 2089 COL6A2,COL6A1,FTCD
SE_02_053300376 chr21:46025404-46096279 Sample_02_0533 Blood vessel Circle of Willis_54y 376 16 2589 166 3 35 0 COL6A1,COL6A2
SE_02_044200115 chr21:46025428-46100855 Sample_02_0442 Bone MG63.3 115 31 2707 186 3 36 164 COL6A2,COL6A1
SE_02_028200017 chr21:46026462-46100559 Sample_02_0282 Lung IMR-90 17 11 2682 186 2 36 164 COL6A2,COL6A1
SE_01_007000392 chr21:46027337-46068301 Sample_01_0070 Ascending aorta ascending-aorta 392 4 1509 99 1 25 0 COL6A2,COL6A1
SE_02_147200049 chr21:46027383-46100404 Sample_02_1472 Fetal lung IMR-90 49 11 2656 185 2 36 164 COL6A2,COL6A1
SE_01_007200171 chr21:46027458-46120043 Sample_01_0072 Breast epithelium breast-epithelium 171 14 3347 234 2 104 1599 COL6A2,FTCD,COL6A1
SE_01_008600314 chr21:46027478-46111658 Sample_01_0086 Thoracic aorta thoracic-aorta 314 7 2956 210 2 36 269 COL6A2,FTCD,COL6A1
SE_01_009300195 chr21:46027491-46123088 Sample_01_0093 Aorta ascending aorta 195 20 3538 249 2 110 2256 COL6A2,COL6A1,FTCD
SE_02_137400086 chr21:46027784-46106466 Sample_02_1374 Pancreas Pancreatic_tumor_associated_fibroblasts_B009B_untreated 86 30 2771 195 2 36 164 COL6A2,COL6A1,FTCD
SE_02_027400049 chr21:46027972-46100581 Sample_02_0274 Endometriosis hTERT_KD 49 7 2650 184 2 36 164 COL6A2,COL6A1
SE_02_145400281 chr21:46028119-46101162 Sample_02_1454 Arter pulmonary arterial smooth muscle cells_PAH1_sialdh1a3 281 13 2658 184 2 36 164 COL6A2,COL6A1
SE_02_089900940 chr21:46028294-46067619 Sample_02_0899 Heart left ventricle_LV1400 940 16 1455 96 1 25 0 COL6A1,COL6A2
SE_01_011700073 chr21:46028307-46093300 Sample_01_0117 Lung fibroblast of lung 73 19 2431 152 2 35 0 COL6A1,COL6A2
SE_02_103000080 chr21:46033031-46099887 Sample_02_1030 Colon DKO 80 21 2486 178 2 36 164 COL6A2
SE_02_044800128 chr21:46033116-46081812 Sample_02_0448 Bone MNNG 128 16 1936 116 2 31 0 COL6A2
SE_02_005300049 chr21:46033305-46084153 Sample_02_0053 Colon DKO1 49 12 2048 130 2 32 0 COL6A2
SE_02_049700043 chr21:46033326-46066280 Sample_02_0497 Fetal lung IMR90_#1 43 13 1273 88 1 20 0 COL6A2
SE_02_055300229 chr21:46033612-46110490 Sample_02_0553 Other HSSY2 shCt 229 16 2747 201 2 36 164 COL6A2,FTCD
SE_02_105000079 chr21:46033704-46101015 Sample_02_1050 Highly metastatic osteosarcoma MG63-3_DMSO 79 20 2505 179 2 36 164 COL6A2
SE_02_137200115 chr21:46033769-46067114 Sample_02_1372 Pancreas PSN1-untreated 115 12 1296 91 1 25 0 COL6A2,COL6A1
SE_02_095100013 chr21:46033835-46097477 Sample_02_0951 HMSCs hMSCs 13 14 2421 164 2 35 0 COL6A2
SE_02_104601193 chr21:46034907-46096018 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1193 17 2355 157 2 35 0 COL6A2
SE_02_114600031 chr21:46035025-46093156 Sample_02_1146 Peripheral nerve STS26T PRC2 WT 31 26 2251 145 2 35 0 COL6A2
SE_02_038000180 chr21:46035407-46094271 Sample_02_0380 Skeletal muscle RH18 180 10 2284 150 2 35 0 COL6A2
SE_02_005600521 chr21:46035504-46066260 Sample_02_0056 Mammary gland HMEC 521 7 1220 86 1 20 0 COL6A2
SE_00_002201236 chr21:46035534-46068318 Sample_00_0022 Lung lung_30y 1236 8 1298 91 1 25 0 COL6A2
SE_02_061300171 chr21:46035686-46095246 Sample_02_0613 Liposarcoma MLPS_T1 171 29 2306 154 2 35 0 COL6A2
SE_02_060900199 chr21:46035699-46101156 Sample_02_0609 Liposarcoma LPS141 199 17 2456 176 2 36 164 COL6A2
SE_00_002600890 chr21:46035833-46068139 Sample_00_0026 Muscle of trunk muscle-of-trunk 890 5 1284 90 1 25 0 COL6A2
SE_02_037500331 chr21:46035866-46067643 Sample_02_0375 Skeletal muscle RMS216 331 7 1257 88 1 25 0 COL6A2
SE_02_114100028 chr21:46035913-46065504 Sample_02_1141 Peripheral nerve MPNST3813E_PRC2 mutant 28 12 1193 85 1 7 0 COL6A2
SE_02_036600432 chr21:46036022-46068114 Sample_02_0366 Skeletal muscle NCI0082 432 7 1274 90 1 25 0 COL6A2
SE_02_061100500 chr21:46036066-46093712 Sample_02_0611 Liposarcoma DDLPS_T1 500 25 2241 146 2 35 0 COL6A2
SE_02_155300683 chr21:46036071-46093279 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 683 17 2226 144 2 35 0 COL6A2
SE_02_079600130 chr21:46036093-46066098 Sample_02_0796 Brain 2229 130 8 1200 85 1 15 0 COL6A2
SE_02_119400662 chr21:46036126-46067806 Sample_02_1194 Brain GBM28 662 17 1250 88 1 25 0 COL6A2
SE_02_022900065 chr21:46036184-46079395 Sample_02_0229 Umbilical cord ID01 65 13 1714 106 2 25 0 COL6A2
SE_02_120000657 chr21:46036194-46066193 Sample_02_1200 Brain GBM36 657 9 1196 85 1 18 0 COL6A2
SE_00_005700640 chr21:46036246-46067170 Sample_00_0057 Heart right ventricle 3y 640 15 1224 88 1 25 0 COL6A2
SE_02_119100804 chr21:46036548-46065989 Sample_02_1191 Brain GBM25 804 11 1174 84 1 15 0 COL6A2
SE_02_137800387 chr21:46036637-46103956 Sample_02_1378 Pancreas Pancreatic_tumor_associated_fibroblasts_CAF08_untreated 387 26 2476 181 2 36 164 COL6A2
SE_02_078900071 chr21:46037898-46101129 Sample_02_0789 Brain 3752 71 14 2346 171 2 36 164 COL6A2
SE_02_111500275 chr21:46037972-46066159 Sample_02_1115 Liver HepG2 275 11 1101 80 1 15 0 COL6A2
SE_02_126700974 chr21:46037972-46066316 Sample_02_1267 Bone Im-GCT-4072_G34W 974 5 1103 80 1 20 0 COL6A2
SE_02_118601044 chr21:46038017-46066391 Sample_02_1186 Brain GBM15 1044 9 1105 81 1 20 0 COL6A2
SE_02_079500009 chr21:46038118-46094309 Sample_02_0795 Brain 1953 9 16 2160 144 2 35 0 COL6A2
SE_02_111300518 chr21:46038142-46066352 Sample_02_1113 Bone U2OS 518 11 1101 81 1 20 0 COL6A2
SE_02_000900408 chr21:46038151-46066003 Sample_02_0009 Kidney 786-O_wtVHL 408 10 1094 80 1 15 0 COL6A2,FTCD
SE_02_007300182 chr21:46038245-46093841 Sample_02_0073 Other 90-8TL_DMSO 182 9 2140 142 2 35 0 COL6A2
SE_02_126300746 chr21:46038251-46101194 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 746 8 2338 171 2 36 164 COL6A2
SE_02_158400142 chr21:46038282-46101122 Sample_02_1584 Brain U87 GBM_Mock 142 11 2336 171 2 36 164 COL6A2
SE_02_015800302 chr21:46038303-46065917 Sample_02_0158 Brain U87_EGFRvIII_erlotinib 302 7 1092 80 1 14 0 COL6A2
SE_02_041900888 chr21:46038315-46066102 Sample_02_0419 Pectoralis major muscle LHCN-M2_nodox 888 8 1093 80 1 15 0 COL6A2
SE_02_059401518 chr21:46038366-46065124 Sample_02_0594 iPSC-derived neural progenitors 1518 5 1054 78 1 7 0 COL6A2
SE_02_113600921 chr21:46038431-46065362 Sample_02_1136 Bone U2OS-anaphase/telophase 921 10 1064 79 1 7 0 COL6A2
SE_02_079900075 chr21:46038452-46093032 Sample_02_0799 Brain MESMN1 75 12 2103 138 2 35 0 COL6A2
SE_02_079700036 chr21:46038466-46094288 Sample_02_0797 Brain PNMNK1 36 9 2148 143 2 35 0 COL6A2
SE_02_083900132 chr21:46038481-46093232 Sample_02_0839 Embryo hNPCs_K755R/+ 132 16 2109 138 2 35 0 COL6A2
SE_02_041400170 chr21:46038498-46061600 Sample_02_0414 Foreskin BJEL 170 6 941 69 0 7 0 COL6A2
SE_02_132400214 chr21:46038610-46057214 Sample_02_1324 Hindbrain Hindbrain derived neural stem cells_NS19_H3.3K27M 214 3 738 51 0 1 0 COL6A2
SE_02_046500252 chr21:46038639-46122232 Sample_02_0465 Adipose subcutaneous adipocytes 252 30 3141 230 2 108 2081 COL6A2,FTCD
SE_02_015500049 chr21:46038646-46062045 Sample_02_0155 Brain U87_EGFRvIII_shSOX9_FBS 49 5 950 69 0 7 0 COL6A2
SE_02_137900409 chr21:46038660-46066130 Sample_02_1379 Pancreas Pancreatic_tumor_associated_fibroblasts_PS1_untreated 409 11 1083 80 1 15 0 COL6A2
SE_02_045100170 chr21:46038663-46101578 Sample_02_0451 Skin in vitro transformedskin fibroblasts_tumourigenic 170 14 2334 171 2 36 164 COL6A2
SE_02_132500606 chr21:46038697-46060643 Sample_02_1325 Hindbrain Hindbrain derived neural stem cells_NS19_H3.3K27M_WT 606 7 894 65 0 1 0 COL6A2
SE_02_045200114 chr21:46038822-46124773 Sample_02_0452 Skin hTERT immortalised human skin fibroblasts_Non-tumourigenic 114 23 3269 246 2 111 2361 COL6A2,FTCD
SE_02_084000304 chr21:46038824-46092890 Sample_02_0840 Embryo hNPCs_R1159Q/+ 304 16 2083 138 2 35 0 COL6A2
SE_02_094100475 chr21:46038844-46066289 Sample_02_0941 Brain T98G 475 5 1074 80 1 20 0 COL6A2
SE_02_080100023 chr21:46038852-46062035 Sample_02_0801 Brain 2235 23 7 939 69 0 7 0 COL6A2
SE_02_113300295 chr21:46044898-46101190 Sample_02_1133 Liver Hepatic stellate cells 295 11 2099 157 2 36 164 COL6A2
SE_02_132800438 chr21:46044931-46067212 Sample_02_1328 Non-mineralized aortic valves aortic valve interstitial cells 438 10 888 69 1 25 0 COL6A2
SE_02_082700544 chr21:46046340-46060306 Sample_02_0827 Stomach normal gastric 544 6 623 48 0 1 0 COL6A2,COL6A1
SE_01_007700501 chr21:46047951-46068352 Sample_01_0077 Gastroesophageal sphincter gastroesophageal-sphincter 501 4 862 65 1 25 0 COL6A2
SE_02_010700771 chr21:46047972-46063198 Sample_02_0107 Endometrium EEC16 771 2 680 53 0 7 0 COL6A2
SE_01_005800309 chr21:46048088-46082365 Sample_01_0058 Prostate PC-3 309 4 1478 92 2 31 0 COL6A2
SE_02_026400312 chr21:46048300-46101437 Sample_02_0264 Skeletal muscle 7250-empty 312 6 2022 151 2 36 164 COL6A2
SE_02_026500056 chr21:46048334-46101387 Sample_02_0265 Skeletal muscle 7250-PAX3-FOXO1 56 5 2020 151 2 36 164 COL6A2
SE_02_141800267 chr21:46048590-46062515 Sample_02_1418 Brain SF9427 267 5 641 49 0 7 0 COL6A2
SE_02_135500358 chr21:46048615-46100504 Sample_02_1355 Umbilical cord umbilical cord-derived mesenchymal stem cells_old 358 8 1997 150 2 36 164 COL6A2
SE_02_135600889 chr21:46048641-46067251 Sample_02_1356 Umbilical cord umbilical cord-derived mesenchymal stem cells_Young 889 5 799 61 1 25 0 COL6A2
SE_02_061200604 chr21:46048642-46067825 Sample_02_0612 Liposarcoma DDLPS_T2 604 12 817 62 1 25 0 COL6A2
SE_02_018200390 chr21:46048763-46065658 Sample_02_0182 melanoma LOX-IMVI 390 3 749 58 1 14 0 COL6A2
SE_02_016100291 chr21:46048787-46061714 Sample_02_0161 Brain U87 291 5 618 47 0 7 0 COL6A2
SE_02_009000256 chr21:46048800-46061513 Sample_02_0090 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_SGA_cycle_6 256 4 610 46 0 7 0 COL6A2
SE_02_066900676 chr21:46048850-46067932 Sample_02_0669 Prostate prostate cancer_DSG 676 13 823 62 1 25 0 COL6A2
SE_02_023000291 chr21:46048856-46061290 Sample_02_0230 Umbilical cord ID60 291 5 605 46 0 7 0 COL6A2
SE_02_017400021 chr21:46048873-46066869 Sample_02_0174 Lung IMR-90_DMSO_2 21 6 785 60 1 20 0 COL6A2
SE_02_145200404 chr21:46049031-46100944 Sample_02_1452 Arter pulmonary arterial smooth muscle cells_PAH2_sictrl 404 10 1995 148 2 36 164 COL6A2
SE_02_127600201 chr21:46049044-46082936 Sample_02_1276 Prostate PC3_GSK126 201 19 1474 90 2 31 0 COL6A2
SE_02_015400009 chr21:46049063-46061352 Sample_02_0154 Brain U87_EGFRvIII_shSCR_FBS 9 2 602 45 0 7 0 COL6A2
SE_02_145500535 chr21:46049073-46104966 Sample_02_1455 Arter pulmonary arterial smooth muscle cells_PAH2_sialdh1a3 535 11 2075 156 2 36 164 COL6A2
SE_02_127700327 chr21:46049214-46065710 Sample_02_1277 Prostate PC3_COMBO 327 7 738 56 1 14 0 COL6A2
SE_00_004101167 chr21:46049392-46067619 Sample_00_0041 Stomach stomach_3y 1167 4 787 57 1 25 0 COL6A2
SE_02_056900604 chr21:46049683-46064445 Sample_02_0569 Periodontal ligament mesenchymal stem cell 604 1 663 51 1 7 0 COL6A2
SE_02_112500312 chr21:46049794-46067807 Sample_02_1125 Adipose visceral adipose_CS_VC06 312 11 770 57 1 25 0 COL6A2
SE_02_136900121 chr21:46049977-46061426 Sample_02_1369 Pancreas P4057-untreated 121 4 557 41 0 7 0 COL6A2
SE_02_013200888 chr21:46049979-46066744 Sample_02_0132 Lung 1015_CL 888 3 733 55 1 20 0 COL6A2
SE_02_124400463 chr21:46050093-46085030 Sample_02_1244 Brain KCNR_ATRA 463 14 1513 97 2 32 0 COL6A2
SE_02_147000681 chr21:46052309-46066332 Sample_02_1470 Umbilical Vein H441 681 4 575 48 1 20 0 COL6A2
SE_02_053400432 chr21:46053087-46093325 Sample_02_0534 Blood vessel Circle of Willis_60y 432 12 1565 104 2 35 0 COL6A2
SE_02_046601057 chr21:46053866-46059199 Sample_02_0466 Adipose visceral adipocytes 1057 1 266 19 0 1 0 COL6A2
SE_00_000400215 chr21:46054358-46066431 Sample_00_0004 Aorta aorta 215 14 504 42 1 20 0 COL6A2
SE_01_010200178 chr21:46054532-46067850 Sample_01_0102 Artery tibial artery 178 7 542 45 1 25 0 COL6A2
SE_02_155400444 chr21:46064228-46111014 Sample_02_1554 Gastrointestinal Stromal GIST-3_KIT e11 444 11 1573 117 1 29 164 COL6A2,FTCD
SE_02_155500438 chr21:46064966-46093805 Sample_02_1555 Gastrointestinal Stromal GIST-4_KIT e9 438 10 1089 64 1 28 0 COL6A2
SE_02_114200336 chr21:46078314-46096248 Sample_02_1142 Peripheral nerve MPNST642_PRC2 mutant 336 5 660 54 0 10 0 COL6A2
SE_02_043700513 chr21:46078666-46085567 Sample_02_0437 Bone 143B 513 5 333 27 0 7 0 COL6A2
SE_02_024400656 chr21:46078738-46105214 Sample_02_0244 Foreskin foreskin_D11 656 6 831 81 0 11 164 COL6A2
SE_02_114100222 chr21:46078742-46084205 Sample_02_1141 Peripheral nerve MPNST3813E_PRC2 mutant 222 8 282 22 0 7 0 COL6A2
SE_02_141800606 chr21:46078778-46101216 Sample_02_1418 Brain SF9427 606 3 747 71 0 11 164 COL6A2
SE_02_156500342 chr21:46080894-46110368 Sample_02_1565 Gastrointestinal Stromal Gastrointestinal stromal tumor 342 8 861 88 0 6 164 COL6A2,FTCD
SE_02_155800400 chr21:46083120-46101040 Sample_02_1558 Gastrointestinal Stromal GIST-7_PDGFRA e18 400 5 515 57 0 5 164 COL6A2
SE_02_143601453 chr21:46085164-46133797 Sample_02_1436 Liver LSEC-Ctrl 1453 14 2069 177 2 170 3835 COL6A2,FTCD
SE_01_007800456 chr21:46090765-46131799 Sample_01_0078 Heart left ventricle heart-left-ventricle 456 7 1751 156 2 131 3550 COL6A2,FTCD
SE_01_008900745 chr21:46090800-46111591 Sample_01_0089 Transverse colon transverse-colon 745 2 580 60 0 4 243 COL6A2,FTCD
SE_01_007700480 chr21:46090812-46144333 Sample_01_0077 Gastroesophageal sphincter gastroesophageal-sphincter 480 12 2490 218 3 176 4500 FTCD,COL6A2,C21ORF56
SE_01_007400486 chr21:46090885-46144437 Sample_01_0074 Esophagus muscularis mucosa esophagus-muscularis-mucosa 486 7 2489 218 3 176 4500 FTCD,COL6A2,C21ORF56
SE_01_008300706 chr21:46090918-46111622 Sample_01_0083 Sigmoid colon sigmoid-colon 706 2 582 60 0 4 260 COL6A2,FTCD
SE_02_126800853 chr21:46091813-46100804 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 853 2 277 35 0 3 164 COL6A2
SE_02_104602252 chr21:46108967-46133633 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2252 5 1445 113 2 166 3671 COL6A2,FTCD
SE_02_116000625 chr21:46109818-46140729 Sample_02_1160 Embryo H1_shLuc 625 7 1809 143 2 172 4176 FTCD,COL6A2,SPATC1L
Genomic distribution of SEs associated with COL6A2
Genome Browser

The strength of the tissue affected by the gene

Expression of COL6A2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)