Sample overview


Search result

SE ID SE Region Size Rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_079700074 chr1:109791727-109877943 86216 74 21 2515 140 7 188 0 CSF1,EPS8L3
SE_02_079700021 chr1:151934800-152001770 66970 21 18 1541 254 4 132 465 S100A10,NBPF18P,THEM4,S100A11
SE_02_079700015 chr1:156096697-156130791 34094 15 10 815 71 4 248 658 LMNA,LAMTOR2,RAB25,UBQLN4,SEMA4A,MEX3A
SE_02_079700064 chr1:16138392-16182561 44169 64 7 1170 121 2 190 489 EPHA2,ARHGEF19
SE_02_079700069 chr1:16889018-16927425 38407 69 8 1418 144 1 27 530 CROCC,RNVU1-18
SE_02_079700199 chr1:19414054-19459101 45047 199 23 1435 226 11 84 307 CAPZB
SE_02_079700137 chr1:203626248-203694521 68273 137 20 1753 76 27 233 290 ATP2B4,SNORA77,LINC00260
SE_02_079700148 chr1:223699261-223733989 34728 148 10 904 123 3 70 419 CAPN2,CAPN8
SE_02_079700180 chr1:224490261-224514189 23928 180 12 554 44 2 30 0 WDR26
SE_02_079700147 chr1:224528875-224566801 37926 147 7 1052 96 0 56 0 CNIH3
SE_02_079700078 chr1:234598817-234620643 21826 78 8 594 41 2 0 780 IRF2BP2,LOC101927787,LINC00184
SE_02_079700121 chr1:234955189-235018120 62931 121 13 1911 67 7 213 308 LOC101927851
SE_02_079700012 chr1:27488090-27604577 116487 12 49 2876 161 4 1589 2192 AHDC1,WASF2,FGR
SE_02_079700112 chr1:30727602-30764621 37019 112 11 1160 59 5 66 994 MIR4420,LAPTM5,MATN1,MATN1-AS1
SE_02_079700181 chr1:36133667-36161808 28141 181 8 779 52 3 229 812 TRAPPC3,MAP7D1,ADPRHL2,COL8A2,TEKT2
SE_02_079700113 chr1:36369668-36409626 39958 113 11 1110 148 5 112 462 STK40,LSM10,EVA1B,OSCP1
SE_02_079700050 chr1:50966890-50985298 18408 50 4 388 19 1 196 657 CDKN2C,FAF1
SE_02_079700144 chr1:53288719-53328625 39906 144 16 1137 123 4 236 560 LOC105378732,LRP8
SE_02_079700081 chr1:58724485-58784060 59575 81 20 1671 108 8 245 532 JUN,LINC01135,MYSM1
SE_02_079700151 chr1:58869845-58904542 34697 151 12 939 32 3 181 308 LINC01135
SE_02_079700122 chr1:84688011-84728416 40405 122 8 964 69 0 71 276 SSX2IP
SE_02_079700205 chr1:91726174-91804613 78439 205 21 2042 85 14 294 561 TGFBR3
SE_02_079700124 chr1:9280665-9325422 44757 124 10 1502 77 3 105 188 SPSB1,H6PD
SE_02_079700039 chr10:16984533-17085619 101086 39 20 2969 216 16 206 559 CUBN,TRDMT1
SE_02_079700157 chr10:52436079-52489509 53430 157 22 1395 37 5 120 187 LINC01468
SE_02_079700196 chr11:118909414-118930281 20867 196 12 483 37 2 360 365 BCL9L,MIR4492,CXCR5,UPK2,FOXR1
SE_02_079700210 chr11:11964796-12009278 44482 210 15 1379 120 7 117 736 DKK3
SE_02_079700061 chr11:122153264-122198795 45531 61 18 1220 30 5 200 59 MIR100HG,MIR100,MIRLET7A2,BLID
SE_02_079700097 chr11:12673510-12697170 23660 97 12 621 3 1 163 354 TEAD1
SE_02_079700075 chr11:35131939-35181538 49599 75 19 1526 91 16 293 351 LOC100507144,CD44
SE_02_079700032 chr11:35212371-35348860 136489 32 32 4045 373 22 539 2214 SLC1A2,CD44
SE_02_079700145 chr11:62538712-62560513 21801 145 6 506 37 2 222 337 AHNAK,MIR3654,EEF1G,TUT1,MTA2,MIR6747
SE_02_079700116 chr11:65416045-65429467 13422 116 3 397 14 2 42 966 NEAT1,SLC25A45,FRMD8,MIR612
SE_02_079700022 chr11:65471188-65508102 36914 22 11 1068 112 4 50 963 MALAT1,SCYL1,NEAT1,MIR612
SE_02_079700212 chr11:8687954-8733296 45342 212 12 1207 99 6 247 2629 ST5,RPL27A,TRIM66,SNORA45A,LOC102724784,SNORA45B
SE_02_079700136 chr11:9564868-9577056 12188 136 3 304 25 1 104 533 WEE1
SE_02_079700123 chr11:96098343-96169898 71555 123 22 1849 47 12 242 0 MAML2,MIR1260B
SE_02_079700028 chr12:108281923-108343689 61766 28 15 1818 130 6 108 1166 CMKLR1
SE_02_079700100 chr12:108823890-108855071 31181 100 11 856 31 2 38 163 SSH1,MIR619,DAO
SE_02_079700079 chr12:121796030-121812633 16603 79 4 452 27 0 228 1861 SETD1B,LINC01089,RHOF,HPD
SE_02_079700202 chr12:122840973-122896359 55386 202 15 1728 132 1 249 3593 HIP1R,VPS37B
SE_02_079700083 chr12:124654602-124728090 73488 83 14 2403 57 5 39 0 NCOR2
SE_02_079700102 chr12:124913601-124941310 27709 102 6 991 29 4 19 807 MIR5188,UBC,SCARB1,DHX37
SE_02_079700048 chr12:12714047-12759962 45915 48 8 1250 66 8 204 598 CDKN1B,APOLD1,MIR613,GPR19
SE_02_079700131 chr12:57130309-57175997 45688 131 7 1169 61 13 362 2697 LRP1,LRP1-AS,STAT6,MIR1228,NXPH4,NAB2
SE_02_079700027 chr12:57835602-57905327 69725 27 16 1649 134 9 120 596 CTDSP2,MIR26A2,XRCC6BP1,AVIL,LOC100506844
SE_02_079700060 chr12:6196000-6234261 38261 60 11 1140 64 6 111 488 CD9
SE_02_079700068 chr12:62682711-62732102 49391 68 14 1414 19 7 144 183 PPM1H,MIRLET7I
SE_02_079700165 chr12:6322164-6348082 25918 165 6 760 58 15 133 1758 PLEKHG6,SCNN1A,TNFRSF1A,LTBR
SE_02_079700040 chr12:6531355-6556066 24711 40 3 836 86 1 199 2384 GAPDH,NCAPD2,IFFO1,SCARNA11,MRPL51,NOP2,SCARNA10
SE_02_079700002 chr12:68785280-68812747 27467 2 7 710 50 1 18 442 MDM2,LOC100130075,SLC35E3
SE_02_079700071 chr12:69006424-69008311 1887 71 1 51 6 0 11 0 CPM
SE_02_079700004 chr12:69051847-69064603 12756 4 3 382 8 0 14 0 CPM
SE_02_079700005 chr12:69095776-69109053 13277 5 3 413 15 2 17 0 CPSF6
SE_02_079700208 chr12:6924451-6938621 14170 208 4 325 22 0 199 1172 ATN1,PTPN6,MIR141,ENO2,MIR200C,SCARNA12,PHB2,RNU7-1,C12ORF57,LRRC23,DSTNP2,EMG1,RPL13P5
SE_02_079700044 chr12:75704789-75774372 69583 44 13 1968 54 5 162 0 KRR1
SE_02_079700056 chr12:75834594-75891525 56931 56 17 1681 31 7 175 0 PHLDA1
SE_02_079700035 chr12:75909372-75987544 78172 35 26 2040 53 7 163 0 PHLDA1
SE_02_079700047 chr12:76003045-76037746 34701 47 7 1012 24 3 132 792 PHLDA1,NAP1L1
SE_02_079700154 chr12:89345727-89355527 9800 154 2 283 31 0 171 485 DUSP6
SE_02_079700160 chr14:77023257-77053351 30094 160 12 822 59 10 465 1041 IRF2BPL,LOC283575,CIPC,LOC102724190
SE_02_079700106 chr15:48383721-48425345 41624 106 11 1181 91 15 149 636 FBN1,DUT
SE_02_079700033 chr15:60362427-60427905 65478 33 16 1707 134 7 182 789 ANXA2,ICE2
SE_02_079700045 chr15:67097763-67151566 53803 45 14 1516 103 18 147 160 SMAD3
SE_02_079700149 chr15:75692264-75717780 25516 149 15 653 40 0 179 267 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_079700150 chr15:89088386-89129358 40972 150 17 1149 60 2 124 442 ABHD2
SE_02_079700135 chr15:89808662-89849680 41018 135 11 1203 110 14 52 1020 C15ORF38-AP3S2,ANPEP,AP3S2,MIR5009,MESP2,MIR5094
SE_02_079700062 chr15:92803293-92838685 35392 62 8 1081 23 0 49 0 LINC01578,ASB9P1
SE_02_079700169 chr16:2120657-2136001 15344 169 4 465 37 0 48 418 MIR3180-5,MIR4516,PKD1,MIR6511B1,TRAF7,SNORD60,MIR1225,RAB26,MIR6511B2,SNHG19
SE_02_079700194 chr16:50563843-50627456 63613 194 21 1848 58 3 151 301 NKD1,LOC101927272
SE_02_079700146 chr16:67435-114132 46697 146 11 1637 142 14 167 2409 RHBDF1,MPG,NPRL3,POLR3K,WASIR2,SNRNP25,HBZ
SE_02_079700178 chr16:69396274-69420757 24483 178 11 593 51 0 77 0 TERF2,TMED6,CYB5B
SE_02_079700008 chr16:70680859-70768717 87858 8 23 2751 266 1 416 2471 VAC14,VAC14-AS1,MTSS1L
SE_02_079700211 chr17:13320561-13379476 58915 211 12 1785 59 6 169 0 MIR548H3
SE_02_079700118 chr17:15944326-15973687 29361 118 11 900 98 1 42 277 ADORA2B,ZSWIM7,TTC19
SE_02_079700204 chr17:17815738-17855945 40207 204 10 1088 95 6 158 2603 TOM1L2,SREBF1,SMCR5,RAI1-AS1,MIR6777,MIR33B
SE_02_079700119 chr17:2061498-2108643 47145 119 15 1356 127 8 509 997 SMG6,DPH1,RTN4RL1,HIC1,MIR132,MIR212,OVCA2
SE_02_079700155 chr17:2171526-2224300 52774 155 12 1421 152 7 525 246 SMG6,LOC101927839
SE_02_079700126 chr17:43266709-43301408 34699 126 12 0 0 0 0 0 RNU2-1,LINC00854
SE_02_079700109 chr17:50027176-50065302 38126 109 20 1113 72 7 197 1094 ITGA3,LOC284080,PDK2,DLX3
SE_02_079700009 chr17:57860695-57953088 92393 9 34 2512 144 10 378 1743 CUEDC1,MRPS23,VEZF1
SE_02_079700049 chr17:59825646-59854355 28709 49 8 636 55 1 111 260 MIR21,VMP1,RPS6KB1,TUBD1
SE_02_079700182 chr17:63973400-63991104 17704 182 6 491 24 0 73 0 PRR29-AS1,SCN4A,CD79B,ICAM2,PRR29
SE_02_079700076 chr17:72404640-72486100 81460 76 23 2514 14 10 300 191 LINC00673
SE_02_079700104 chr17:72501270-72540813 39543 104 13 1152 7 0 138 0 LINC00673
SE_02_079700067 chr17:75847708-75882226 34518 67 8 974 107 8 200 1559 TRIM47,WBP2,MRPL38,UNC13D,TRIM65
SE_02_079700018 chr17:77363565-77478028 114463 18 26 3790 212 3 316 1596 SEPT9,MIR4316
SE_02_079700077 chr17:78861235-78897186 35951 77 10 1295 92 9 79 617 CEP295NL,TIMP2,USP36
SE_02_079700213 chr17:8126177-8158847 32670 213 6 1082 87 4 388 2565 PER1,MIR6883,MIR4521,HES7,ALOXE3,BORCS6,ALOX12B,SNORD118,MIR4314,TMEM107,VAMP2
SE_02_079700066 chr18:3446273-3463919 17646 66 8 461 15 1 195 979 TGIF1,GAPLINC
SE_02_079700093 chr18:3594082-3625413 31331 93 7 824 50 5 63 753 DLGAP1,DLGAP1-AS2,DLGAP1-AS1
SE_02_079700185 chr18:45745469-45804051 58582 185 13 1624 201 1 73 348 SLC14A1,SIGLEC15
SE_02_079700055 chr18:59873309-59924006 50697 55 14 1383 61 3 72 366 PMAIP1
SE_02_079700153 chr19:11083913-11096406 12493 153 5 353 13 11 6 318 LDLR,MIR6886
SE_02_079700098 chr19:1244775-1267117 22342 98 9 856 22 1 254 1764 ATP5D,MIDN,C19ORF24,CIRBP,CIRBP-AS1,STK11,CBARP,EFNA2
SE_02_079700001 chr19:12982958-13093827 110869 1 28 2709 118 4 1086 1384 NFIX,FARSA,DAND5,MIR6515,RAD23A,GADD45GIP1,CALR,LYL1,TRMT1,NACC1
SE_02_079700023 chr19:13115434-13119901 4467 23 1 117 5 1 60 489 TRMT1,NACC1,IER2,STX10,LYL1
SE_02_079700003 chr19:13148813-13173489 24676 3 5 652 47 2 109 937 IER2,STX10,LYL1,TRMT1,NACC1
SE_02_079700141 chr19:3365367-3408862 43495 141 8 1418 54 2 75 355 NFIC
SE_02_079700117 chr19:38647642-38694549 46907 117 12 1297 141 4 222 121 ACTN4,EIF3K,CAPN12,MAP4K1
SE_02_079700091 chr19:47094473-47114359 19886 91 4 572 16 1 172 393 ZC3H4,TMEM160,SAE1
SE_02_079700201 chr19:53863718-53879987 16269 201 3 454 28 0 89 1085 MYADM,CACNG7,NLRP12,PRKCG
SE_02_079700014 chr19:6036112-6110538 74426 14 21 1933 119 10 55 424 RFX2,ACSBG2
SE_02_079700114 chr2:12701407-12734419 33012 114 7 906 18 2 266 524 TRIB2,MIR3125
SE_02_079700198 chr2:156331477-156343379 11902 198 5 226 5 1 252 534 NR4A2
SE_02_079700186 chr2:157166946-157195074 28128 186 13 635 24 0 147 0 GALNT5
SE_02_079700197 chr2:157245172-157265826 20654 197 5 536 27 2 64 270 GALNT5
SE_02_079700142 chr2:1714748-1745379 30631 142 10 911 70 0 0 249 PXDN
SE_02_079700159 chr2:205728725-205775554 46829 159 12 1290 34 6 462 691 NRP2
SE_02_079700125 chr2:219681008-219707142 26134 125 10 668 48 5 48 0 SLC4A3
SE_02_079700041 chr2:223513632-223613966 100334 41 24 2770 61 7 351 330 SCG2
SE_02_079700029 chr2:231355613-231412421 56808 29 15 1601 179 3 103 1957 B3GNT7,MIR4777,ARMC9,SNORA75,SNORD82,SNORD20
SE_02_079700179 chr2:231596274-231614956 18682 179 7 512 61 1 88 0 C2ORF57
SE_02_079700162 chr2:237196078-237236653 40575 162 15 1209 55 2 87 0 COPS8
SE_02_079700107 chr2:238631234-238670477 39243 107 9 1218 43 1 94 0 LINC01107
SE_02_079700057 chr2:238842066-238896564 54498 57 12 1583 41 0 168 369 TWIST2,FLJ43879
SE_02_079700173 chr2:28389465-28400276 10811 173 3 249 12 1 65 512 FOSL2,FLJ31356
SE_02_079700209 chr2:42957330-42975752 18422 209 7 676 29 4 94 0 LOC102723854
SE_02_079700010 chr2:43030847-43107464 76617 10 20 2675 83 17 249 0 LOC102723854
SE_02_079700082 chr2:43217911-43229417 11506 82 2 390 17 0 201 1185 LINC01126,ZFP36L2
SE_02_079700013 chr2:67842332-67919787 77455 13 24 2451 10 6 394 0 LOC101927701
SE_02_079700026 chr2:95890315-95931016 40701 26 9 1163 60 0 0 978 ANKRD36C
SE_02_079700128 chr20:17555603-17571650 16047 128 5 436 20 1 69 487 DSTN,BFSP1
SE_02_079700164 chr20:31695628-31724025 28397 164 12 653 50 3 208 370 ABALON,BCL2L1,TPX2
SE_02_079700167 chr20:33516380-33534100 17720 167 5 432 19 0 26 0 CBFA2T2
SE_02_079700030 chr20:33662602-33664844 2242 30 1 63 1 0 7 261 C20ORF144,NECAB3,E2F1,ACTL10
SE_02_079700158 chr20:33666086-33668561 2475 158 1 71 4 0 44 498 NECAB3,ACTL10,E2F1,C20ORF144
SE_02_079700007 chr20:33672214-33677446 5232 7 1 133 7 1 33 736 NECAB3,E2F1,C20ORF144,PXMP4,ACTL10
SE_02_079700140 chr20:36819954-36864440 44486 140 20 1035 71 2 117 732 SOGA1,TLDC2,DSN1
SE_02_079700011 chr20:47308731-47361760 53029 11 10 1472 7 4 199 1313 ZMYND8,LOC100131496
SE_02_079700042 chr20:53579027-53625809 46782 42 13 1144 9 1 168 449 ZNF217,LOC101927770
SE_02_079700094 chr20:53890018-53949973 59955 94 15 1653 28 6 87 204 BCAS1,SUMO1P1
SE_02_079700129 chr20:58038844-58085639 46795 129 17 1404 53 5 19 0 C20ORF85
SE_02_079700086 chr21:29129653-29187904 58251 86 17 1512 256 12 219 459 MAP3K7CL,LINC00189
SE_02_079700200 chr21:32403643-32428710 25067 200 6 655 79 0 98 257 EVA1C,URB1-AS1,SNORA80A,URB1
SE_02_079700134 chr21:33962301-34005796 43495 134 12 1275 157 10 72 262 LINC00649,ATP5O
SE_02_079700120 chr21:45361880-45388548 26668 120 12 1086 106 2 36 0 COL18A1,COL18A1-AS1,COL18A1-AS2,LINC00316
SE_02_079700038 chr21:45949928-45984788 34860 38 7 1064 144 2 32 477 LOC101928796,COL6A1
SE_02_079700036 chr21:46038466-46094288 55822 36 9 2148 143 2 35 0 COL6A2
SE_02_079700025 chr22:30185555-30256302 70747 25 19 1899 171 15 429 1238 LIF,OSM,GATSL3
SE_02_079700207 chr22:35960303-35975615 15312 207 4 371 11 0 71 0 RBFOX2
SE_02_079700156 chr22:45502394-45554474 52080 156 16 1786 77 4 133 1500 FBLN1
SE_02_079700161 chr22:46051874-46060185 8311 161 1 236 17 1 89 717 PRR34,PRR34-AS1,MIR3619,LINC00899,LOC730668,MIRLET7BHG
SE_02_079700006 chr22:46062573-46088032 25459 6 1 746 27 2 173 131 MIRLET7BHG,PRR34,MIR3619,LINC00899,PRR34-AS1,MIRLET7A3,MIR4763,MIRLET7B
SE_02_079700096 chr3:10159712-10207085 47373 96 14 1539 127 3 42 343 IRAK2,BRK1,VHL,TATDN2
SE_02_079700037 chr3:12369153-12480384 111231 37 29 2891 240 23 531 531 PPARG,TSEN2
SE_02_079700168 chr3:149366605-149389051 22446 168 9 623 50 3 71 464 TM4SF1-AS1,TM4SF1,TM4SF18
SE_02_079700058 chr3:149528389-149611264 82875 58 21 2186 53 9 171 144 WWTR1,WWTR1-AS1
SE_02_079700016 chr3:181699467-181737222 37755 16 8 853 3 1 580 602 SOX2-OT,SOX2
SE_02_079700176 chr3:195885948-195915676 29728 176 8 957 101 1 160 1583 TNK2,MIR6829
SE_02_079700214 chr3:27523964-27559788 35824 214 14 1088 49 1 33 0 SLC4A7
SE_02_079700192 chr3:66398482-66453243 54761 192 19 1893 175 9 220 885 LRIG1
SE_02_079700143 chr4:123396362-123419972 23610 143 9 588 8 1 98 737 SPRY1
SE_02_079700183 chr4:156930546-156977513 46967 183 19 1237 17 3 268 214 PDGFC
SE_02_079700034 chr4:80115420-80186789 71369 34 21 1980 160 7 234 216 PRDM8,ANTXR2
SE_02_079700072 chr5:124732772-124755588 22816 72 9 529 1 3 365 346 ZNF608
SE_02_079700132 chr5:134501611-134530437 28826 132 9 671 62 7 351 814 JADE2,LOC101927934
SE_02_079700024 chr5:139635994-139711830 75836 24 24 1759 109 7 1041 572 CXXC5,LOC101929696
SE_02_079700188 chr5:150574021-150625285 51264 188 12 1575 120 5 267 394 SYNPO,MYOZ3
SE_02_079700166 chr5:150762972-150790953 27981 166 9 710 82 5 60 273 SMIM3,DCTN4
SE_02_079700174 chr5:151663856-151700258 36402 174 9 1003 91 4 116 1301 CTB-113P19.1,SPARC
SE_02_079700105 chr5:172764925-172801901 36976 105 10 1166 64 2 200 574 DUSP1,LOC101928093,ERGIC1
SE_02_079700043 chr5:367449-402308 34859 43 14 1114 112 0 31 94 AHRR,EXOC3-AS1,EXOC3
SE_02_079700053 chr5:42991204-43039039 47835 53 8 1273 142 6 0 895 LOC648987,FLJ32255,LOC153684,ANXA2R,LOC100506639,LOC100132356
SE_02_079700087 chr5:53330605-53379298 48693 87 22 1378 80 8 270 0 FST
SE_02_079700139 chr5:82330209-82376979 46770 139 18 1119 68 1 186 0 ATP6AP1L
SE_02_079700101 chr5:88656441-88681063 24622 101 10 517 13 4 587 778 LINC00461,MIR9-2
SE_02_079700133 chr5:93564549-93589224 24675 133 4 466 14 0 456 1199 NR2F1,NR2F1-AS1,MIR2277
SE_02_079700052 chr6:111535087-111606547 71460 52 17 1663 203 10 334 1940 TRAF3IP2,TRAF3IP2-AS1
SE_02_079700215 chr6:111997336-112043762 46426 215 11 1282 71 3 144 0 TUBE1,WISP3,FAM229B
SE_02_079700177 chr6:158025574-158072084 46510 177 13 1508 98 4 108 1668 SYNJ2,SYNJ2-IT1
SE_02_079700152 chr6:16752200-16770969 18769 152 7 423 23 2 230 200 ATXN1
SE_02_079700190 chr6:36666276-36686396 20120 190 5 550 57 6 115 630 CDKN1A,PANDAR,MIR3925,RAB44
SE_02_079700017 chr7:104923130-104985073 61943 17 17 1517 85 1 80 714 LHFPL3-AS2,LINC01004,KMT2E-AS1,KMT2E
SE_02_079700088 chr7:105003148-105017982 14834 88 5 437 14 0 101 724 KMT2E,KMT2E-AS1,LINC01004
SE_02_079700203 chr7:107988532-108015061 26529 203 9 763 32 2 109 587 LAMB1
SE_02_079700085 chr7:116510312-116529770 19458 85 4 483 61 3 87 482 CAV1,CAV2
SE_02_079700099 chr7:116559763-116588947 29184 99 8 836 57 12 45 146 CAV1,LINC01510
SE_02_079700163 chr7:122300334-122319426 19092 163 7 480 12 3 232 1150 FEZF1,FEZF1-AS1,CADPS2
SE_02_079700031 chr7:130887634-130924367 36733 31 13 1117 64 4 125 118 LOC100506860,LINC-PINT,MIR29A,MIR29B1
SE_02_079700063 chr7:13977684-13991448 13764 63 3 404 0 3 187 490 ETV1
SE_02_079700187 chr7:158816145-158830539 14394 187 3 459 44 1 39 355 ESYT2,WDR60
SE_02_079700080 chr7:16951593-16992112 40519 80 13 1349 78 5 78 0 AGR3
SE_02_079700095 chr7:17485497-17557326 71829 95 29 2602 66 8 129 0 LOC101927630
SE_02_079700191 chr7:17640019-17664279 24260 191 9 867 42 1 41 0 LOC101927630
SE_02_079700195 chr7:20328955-20352998 24043 195 5 680 31 3 127 364 ITGB8,LOC101927811,LOC101927769
SE_02_079700171 chr7:23467000-23475557 8557 171 1 190 10 0 103 262 IGF2BP3,RPS2P32
SE_02_079700089 chr7:43637201-43675354 38153 89 13 954 154 1 0 418 COA1,STK17A
SE_02_079700073 chr7:47291167-47337370 46203 73 11 1262 38 3 75 618 TNS3
SE_02_079700019 chr7:5418556-5430719 12163 19 2 367 3 0 255 846 TNRC18
SE_02_079700090 chr7:55064770-55112715 47945 90 10 1422 72 10 144 54 EGFR
SE_02_079700175 chr7:77309005-77349423 40418 175 13 1095 172 6 94 817 GSAP,LOC101927243
SE_02_079700189 chr8:115418410-115469183 50773 189 17 1202 9 2 438 24 TRPS1
SE_02_079700110 chr8:127898325-127951441 53116 110 15 1575 34 4 113 517 PVT1,TMEM75,MIR1205
SE_02_079700065 chr8:143933354-143954366 21012 65 5 737 66 2 252 2263 PLEC,MIR661,PARP10,GRINA
SE_02_079700184 chr8:24994178-25011502 17324 184 4 497 14 1 29 0 NEFL,MIR6841
SE_02_079700170 chr8:27635865-27676413 40548 170 11 1228 145 6 158 1029 SCARA3,MIR3622B,CLU,MIR3622A,MIR6843
SE_02_079700020 chr8:66503875-66565950 62075 20 16 1675 59 2 215 733 C8ORF46,MYBL1
SE_02_079700193 chr9:110741339-110759172 17833 193 8 442 16 2 19 61 MUSK,SVEP1
SE_02_079700059 chr9:113595782-113627598 31816 59 10 905 98 3 87 336 RGS3
SE_02_079700051 chr9:121260593-121298871 38278 51 14 961 100 0 135 818 GSN-AS1,GSN
SE_02_079700138 chr9:127535968-127584885 48917 138 13 1359 178 6 147 304 FAM129B,STXBP1
SE_02_079700111 chr9:129136570-129148649 12079 111 3 487 48 0 53 1126 PPP2R4,IER5L,CRAT
SE_02_079700046 chr9:129451187-129501110 49923 46 14 1451 93 0 146 419 LINC00963
SE_02_079700206 chr9:133112501-133144489 31988 206 8 1027 70 1 120 526 RALGDS,GBGT1,CELP
SE_02_079700092 chr9:14302672-14324381 21709 92 7 547 2 1 352 283 NFIB
SE_02_079700103 chr9:21549399-21593579 44180 103 14 1257 19 7 108 166 MIR31HG,MIR31
SE_02_079700108 chr9:21656544-21690242 33698 108 14 1307 72 14 118 0 MIR31HG
SE_02_079700115 chr9:22139166-22171403 32237 115 17 934 38 4 72 0 CDKN2B
SE_02_079700127 chr9:3498431-3527828 29397 127 7 903 39 0 177 136 RFX3
SE_02_079700084 chr9:37914001-37976754 62753 84 21 1841 140 6 174 1102 SHB,SLC25A51
SE_02_079700054 chr9:37997865-38049004 51139 54 21 1581 130 12 160 93 SHB
SE_02_079700130 chr9:3936403-3994373 57970 130 16 2141 37 12 414 119 GLIS3,GLIS3-AS1
SE_02_079700172 chr9:673301-709402 36101 172 9 1365 150 7 91 365 KANK1
SE_02_079700070 chrX:115844231-115888925 44694 70 16 28 0 0 0 0 DANT2

SE annotation visualization


Information description of sample and annotation

Case ID: Name:GSM3382303
Input ID: Name:GSM3382304
Common SNP: dbSNP
eQTL: GTEx, HaploReg v4.1, PancanQTL
Risk SNP : GWAS Catalog, GWASdb v2.0
TFBS: TFBS Conserved of UCSC
CRISPR/Cas9 target site: CRISPR Targets of UCSC

Software and parameters used

Read Mapping: bowtie(v2.4.4) -p 10 -x -S -U
Peak Calling: macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb