SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000035403
Gene: VCL Gene type: protein_coding
Strand: + External links:
Genomic region: chr10:73995193-74121363 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_102900045 chr10:73876041-73968700 Sample_02_1029 Colon HCT116 45 34 2545 266 8 295 1285 C10ORF55,PLAU,VCL,CAMK2G
SE_02_103600599 chr10:73877235-73987631 Sample_02_1036 Mammary gland HCC70_XY018 599 41 3029 328 10 308 1285 C10ORF55,PLAU,VCL,CAMK2G
SE_02_103100011 chr10:73877378-73967719 Sample_02_1031 Head and neck SCC1 contol 11 52 2497 263 8 278 1285 C10ORF55,PLAU,VCL,CAMK2G
SE_02_098900731 chr10:73885995-73967231 Sample_02_0989 Kidney kidney cortex_WT 731 16 2255 241 8 269 1285 C10ORF55,PLAU,VCL,CAMK2G
SE_02_061600043 chr10:73886211-73967344 Sample_02_0616 Liposarcoma liposarcoma cells_LP6 43 21 2252 241 8 267 1285 C10ORF55,PLAU,VCL,CAMK2G
SE_02_119100205 chr10:73886259-73980339 Sample_02_1191 Brain GBM25 205 30 2594 281 9 294 1285 C10ORF55,PLAU,VCL,CAMK2G
SE_02_080800157 chr10:73886364-73968603 Sample_02_0808 Ovary RMG1_ARID1A KO 157 43 2277 243 8 275 1285 C10ORF55,PLAU,VCL,CAMK2G
SE_02_109900094 chr10:73887293-73966878 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 94 23 2226 238 8 265 1285 C10ORF55,PLAU,VCL,CAMK2G,FUT11,C10orf55
SE_02_152900718 chr10:73906031-73960608 Sample_02_1529 Peripheral blood neutrophils_0BC75 718 18 1543 136 5 158 1285 C10ORF55,PLAU,VCL,CAMK2G
SE_02_104601656 chr10:73906930-73967394 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1656 21 1711 155 5 174 1285 C10ORF55,PLAU,VCL,CAMK2G
SE_02_061301102 chr10:73935276-73968596 Sample_02_0613 Liposarcoma MLPS_T1 1102 11 947 85 0 81 0 VCL,C10ORF55,PLAU
SE_02_053301063 chr10:73936449-73980181 Sample_02_0533 Blood vessel Circle of Willis_54y 1063 11 1222 119 0 97 0 VCL,C10ORF55,PLAU
SE_02_084000601 chr10:73937146-73968994 Sample_02_0840 Embryo hNPCs_R1159Q/+ 601 7 884 82 0 78 0 VCL,C10ORF55,PLAU
SE_02_086701328 chr10:73937377-73968699 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 1328 15 875 81 0 78 0 VCL,C10ORF55,PLAU
SE_02_055700138 chr10:73937487-73970137 Sample_02_0557 iPSCs WT hiPSC#1 138 6 903 83 0 79 0 VCL,C10ORF55,PLAU
SE_02_083900645 chr10:73937551-73969191 Sample_02_0839 Embryo hNPCs_K755R/+ 645 6 880 82 0 78 0 VCL,C10ORF55,PLAU
SE_02_053400701 chr10:73937583-73980124 Sample_02_0534 Blood vessel Circle of Willis_60y 701 7 1175 117 0 96 0 VCL,C10ORF55,PLAU
SE_02_104801739 chr10:73937689-73966031 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1739 6 809 76 0 49 0 VCL,C10ORF55,PLAU
SE_02_143301717 chr10:73937782-73969879 Sample_02_1433 Bone A673 STAG2 null 1717 15 885 82 0 77 0 VCL,C10ORF55,PLAU
SE_02_059400678 chr10:73938028-73980161 Sample_02_0594 iPSC-derived neural progenitors 678 8 1161 116 0 92 0 VCL,C10ORF55,PLAU
SE_02_124100747 chr10:73940464-73969623 Sample_02_1241 Skin MCC26_virus_negative 747 9 808 77 0 73 0 VCL,C10ORF55,PLAU
SE_02_143201735 chr10:73940496-73972595 Sample_02_1432 Bone A673 STAG2 WT 1735 18 885 87 0 82 0 VCL,C10ORF55,PLAU
SE_02_055600621 chr10:73940854-73969086 Sample_02_0556 iPSCs BOFS hiPSC cl1 621 4 783 74 0 71 0 VCL,C10ORF55,PLAU
SE_02_003600243 chr10:73950211-73969989 Sample_02_0036 Embryo H7 243 5 505 49 0 66 0 PLAU,VCL,C10ORF55
SE_02_010400137 chr10:73953225-74059187 Sample_02_0104 Blood neutrophils 137 18 2566 247 5 247 290 VCL,PLAU,C10ORF55
SE_02_153100537 chr10:73953486-73995960 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 537 9 1094 127 2 92 39 VCL,C10ORF55,PLAU
SE_02_024200681 chr10:73955408-73970525 Sample_02_0242 Colon V481 681 3 380 39 0 57 0 PLAU,VCL,C10ORF55
SE_01_009000360 chr10:73955546-74060315 Sample_01_0090 Lung upper-lobe-of-left-lung 360 13 2547 244 5 243 290 VCL,PLAU,C10ORF55
SE_02_127300371 chr10:73955828-73969971 Sample_02_1273 Cervix HeLa 371 3 354 36 0 53 0 VCL,C10ORF55,PLAU
SE_02_040800285 chr10:73955918-74003687 Sample_02_0408 Kidney G401_Dox 285 9 1205 139 2 146 247 VCL,PLAU,C10ORF55
SE_02_086901062 chr10:73955970-73969888 Sample_02_0869 Fibroblast VH10_NO_UV 1062 9 351 36 0 53 0 VCL,C10ORF55,PLAU
SE_02_116000240 chr10:73956017-73969859 Sample_02_1160 Embryo H1_shLuc 240 3 349 36 0 53 0 VCL,C10ORF55,PLAU
SE_02_101700770 chr10:73956060-73979565 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 770 5 613 69 0 70 0 VCL,C10ORF55,PLAU,C10orf55
SE_02_101600296 chr10:73956104-73979644 Sample_02_1016 Embryo H9_Mesendoderm_24h 296 5 613 71 0 70 0 VCL,C10ORF55,PLAU,C10orf55
SE_02_002100775 chr10:73956193-73968926 Sample_02_0021 Colon V429 775 2 322 35 0 52 0 PLAU,VCL,C10ORF55
SE_02_074500856 chr10:73956226-73969069 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 856 3 323 35 0 52 0 VCL,C10ORF55,PLAU
SE_02_003900908 chr10:73956269-73969014 Sample_02_0039 Embryo AFG 908 2 322 35 0 52 0 PLAU,VCL,C10ORF55
SE_02_070600485 chr10:73956395-73968080 Sample_02_0706 Pancreas SUIT2 WT 485 5 302 34 0 44 0 VCL,C10ORF55,PLAU
SE_02_157000177 chr10:73956498-73969671 Sample_02_1570 iPSCs EiPSC 177 4 335 35 0 53 0 VCL,C10ORF55,PLAU
SE_02_004001128 chr10:73956567-73977772 Sample_02_0040 Embryo PFG 1128 3 559 62 0 65 0 PLAU,VCL,C10ORF55
SE_02_058800562 chr10:73956663-73969761 Sample_02_0588 Cervix HeLa Kyoto_untreated 562 6 329 35 0 53 0 VCL,C10ORF55,PLAU
SE_02_055900384 chr10:73956704-73969594 Sample_02_0559 iPSCs FX52 iPSCs dC-T 384 2 327 35 0 45 0 VCL,C10ORF55,PLAU
SE_02_132201172 chr10:73956722-73967896 Sample_02_1322 Connective Tissue HT1080_WT 1172 2 293 32 0 33 0 VCL,C10ORF55,PLAU
SE_02_003800432 chr10:73956766-73970232 Sample_02_0038 Embryo DE 432 2 338 36 0 39 0 PLAU,VCL,C10ORF55
SE_02_157200324 chr10:73956772-73969083 Sample_02_1572 iPSCs FiPSC 324 3 312 34 0 38 0 VCL,C10ORF55,PLAU
SE_02_101500272 chr10:73956774-73980234 Sample_02_1015 Embryo H9_ Undifferentiated 272 9 614 70 0 56 0 VCL,C10ORF55,PLAU,C10orf55
SE_02_067600126 chr10:73956778-73969891 Sample_02_0676 Embryo H1 hESC-derived neural progenitor cells_Smad_3hr 126 5 331 35 0 39 0 VCL,C10ORF55,PLAU
SE_02_156700349 chr10:73956910-73969023 Sample_02_1567 iPSCs CiPSC 349 2 306 34 0 34 0 VCL,C10ORF55,PLAU
SE_02_117200304 chr10:73957692-73969883 Sample_02_1172 Embryo H9 WT 304 2 308 32 0 32 0 VCL,C10ORF55,PLAU,C10orf55
SE_02_011400448 chr10:73959473-73972461 Sample_02_0114 Mammary gland CAL51 448 3 318 34 0 41 0 PLAU,VCL,C10ORF55
SE_02_039700410 chr10:73962017-73970079 Sample_02_0397 Mammary gland CAL51-MCF-7 410 2 198 18 0 31 0 VCL,C10ORF55
SE_02_067700132 chr10:73962528-73969702 Sample_02_0677 Embryo H1 hESC-derived neural progenitor cells_Smad_6hr 132 4 180 17 0 31 0 VCL,C10ORF55
SE_02_032900037 chr10:73963214-73970225 Sample_02_0329 Embryo H9_primed 37 1 175 17 0 31 0 VCL,C10ORF55
SE_02_032800281 chr10:73963453-73970221 Sample_02_0328 Embryo H9_naive 281 1 165 16 0 31 0 VCL,C10ORF55
SE_02_067900532 chr10:73963556-73969892 Sample_02_0679 Embryo H1 hESC-derived neural progenitor cells_Smad_24hr 532 8 155 15 0 31 0 VCL,C10ORF55
SE_02_067800201 chr10:73963577-73969667 Sample_02_0678 Embryo H1 hESC-derived neural progenitor cells_Smad_12hr 201 5 150 15 0 31 0 VCL,C10ORF55
SE_02_116100217 chr10:73963587-73969596 Sample_02_1161 Embryo H1_shZNF587 217 1 146 15 0 31 0 VCL,C10ORF55
SE_02_099100747 chr10:73964098-73969248 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 747 2 124 14 0 29 0 VCL,C10ORF55
SE_02_001700713 chr10:73964214-73968866 Sample_02_0017 Embryo H9_ESC 713 1 109 13 0 29 0 VCL,C10ORF55
SE_02_055800539 chr10:73964318-73969180 Sample_02_0558 iPSCs FX52 iPSCs mock 539 5 116 14 0 29 0 VCL,C10ORF55
SE_02_086100352 chr10:73964373-73969186 Sample_02_0861 iPSCs SAH_WT 352 2 115 13 0 29 0 VCL,C10ORF55
SE_02_153500512 chr10:73964387-73967332 Sample_02_1535 Mammary gland MDA-MB-231_ER?WT_45min 512 1 74 8 0 20 0 VCL,C10ORF55
SE_00_001800167 chr10:73964398-73969130 Sample_00_0018 Dermal fibroblasts iPS-18axian 167 1 110 11 0 29 0 VCL,C10ORF55
SE_02_074200049 chr10:73964429-73969204 Sample_02_0742 Embryo ESCs_day0 49 2 114 12 0 29 0 VCL,C10ORF55
SE_00_002400523 chr10:73964452-73969999 Sample_00_0024 Embryo mesendoderm 523 2 129 12 0 30 0 VCL,C10ORF55
SE_02_153700552 chr10:73964463-73968528 Sample_02_1537 Mammary gland MDA-MB-231_ER?_L540Q_45min 552 1 98 10 0 29 0 VCL,C10ORF55
SE_02_153400555 chr10:73964498-73968443 Sample_02_1534 Mammary gland MDA-MB-231_ER?WT_0min 555 1 95 10 0 29 0 VCL,C10ORF55
SE_02_086000474 chr10:73964512-73969074 Sample_02_0860 iPSCs SAH_SMARCB1_K364del/+ 474 2 108 11 0 29 0 VCL,C10ORF55
SE_02_012500786 chr10:73964540-73970400 Sample_02_0125 Embryo Embryonic-stem-cells_Primed 786 1 137 14 0 30 0 VCL,C10ORF55
SE_02_153600316 chr10:73964580-73968513 Sample_02_1536 Mammary gland MDA-MB-231_ER?_L540Q_0min 316 3 94 10 0 29 0 VCL,C10ORF55
SE_01_003300099 chr10:73964581-73969466 Sample_01_0033 Embryo H9 99 1 115 12 0 30 0 VCL,C10ORF55
SE_00_001600167 chr10:73964625-73968866 Sample_00_0016 Foreskin iPS-DF-19.11 172 1 100 11 0 29 0 VCL,C10ORF55
SE_02_056000157 chr10:73964699-73969968 Sample_02_0560 iPSCs FX52_Cas9-inactive Tet1_CGG sgRNA 157 3 126 12 0 30 0 VCL,C10ORF55
SE_00_004800259 chr10:73964730-73967809 Sample_00_0048 Embryo neuronal stem cell originated from H1 259 4 82 8 0 20 0 VCL,C10ORF55
SE_02_006700642 chr10:73964735-73969297 Sample_02_0067 Embryo AzH-G2/M 642 1 110 12 0 30 0 VCL,C10ORF55
SE_01_009500622 chr10:73964774-73968737 Sample_01_0095 Embryo neuroepithelial stem cell stably expressing HES5 originated from H9 622 1 97 10 0 29 0 VCL,C10ORF55
SE_01_003100150 chr10:73964858-73968611 Sample_01_0031 Skin GM23338 150 1 95 10 0 29 0 VCL,C10ORF55
SE_02_075501255 chr10:73964957-73970309 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 1255 1 130 14 0 30 0 VCL,C10ORF55
SE_02_075201248 chr10:73964989-73970241 Sample_02_0752 Embryo ES-derived progenitors_DE_wild type 1248 1 128 13 0 30 0 VCL,C10ORF55
SE_02_083800444 chr10:73965028-73968748 Sample_02_0838 Embryo hNPCs_WT 444 4 95 10 0 27 0 VCL,C10ORF55
SE_02_052900058 chr10:73965145-73968503 Sample_02_0529 Heart Heart-derived sendai virus reprogrammed iPSC 58 4 88 10 0 27 0 VCL,C10ORF55
SE_00_001900203 chr10:73965153-73970208 Sample_00_0019 Dermal fibroblasts iPS-20b 203 1 125 12 0 28 0 VCL,C10ORF55
SE_02_074300139 chr10:73965161-73969906 Sample_02_0743 Embryo ES derived mesoderm_day2 139 3 118 12 0 28 0 VCL,C10ORF55
SE_00_001200213 chr10:73965379-73969050 Sample_00_0012 Embryo H1-hESC 213 1 85 11 0 27 0 VCL,C10ORF55
SE_00_001300085 chr10:73965389-73969020 Sample_00_0013 Embryo H9 85 1 83 11 0 27 0 VCL,C10ORF55
SE_01_011600080 chr10:73965674-73967881 Sample_01_0116 Embryo H1-hESC 80 3 51 6 0 18 0 VCL,C10ORF55
SE_01_003900265 chr10:73989296-74029801 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 265 10 987 83 1 121 274 VCL
SE_02_017600416 chr10:73990474-74040780 Sample_02_0176 Peripheral blood LOUCY 416 11 1218 99 2 134 274 VCL
SE_01_008600698 chr10:73992782-74080395 Sample_01_0086 Thoracic aorta thoracic-aorta 698 11 2062 199 3 219 716 VCL
SE_02_011000541 chr10:73996671-74082599 Sample_02_0110 Ovaries IOE11 541 10 2005 192 3 228 710 VCL
SE_02_002100926 chr10:73996717-74000491 Sample_02_0021 Colon V429 926 1 78 10 0 59 208 VCL
SE_01_005800845 chr10:73996760-74014439 Sample_01_0058 Prostate PC-3 845 3 448 32 0 89 208 VCL
SE_01_007600198 chr10:73996816-74085463 Sample_01_0076 Gastrocnemius medialis gastrocnemius-medialis 198 7 2072 199 3 240 770 VCL
SE_01_008100373 chr10:73996896-74069008 Sample_01_0081 Right atrium auricular region right-atrium-auricular-region 373 9 1705 143 3 160 251 VCL
SE_01_008900646 chr10:73996906-74056344 Sample_01_0089 Transverse colon transverse-colon 646 8 1373 112 3 146 251 VCL
SE_02_026100099 chr10:73996934-74083102 Sample_02_0261 Osteoblastic hFOB_differentiated 99 17 2006 191 3 231 724 VCL
SE_02_029400177 chr10:73996950-74081899 Sample_02_0294 Pancreatic L3-6_DMSO 177 12 1984 190 3 218 677 VCL
SE_02_030100535 chr10:73996959-74081942 Sample_02_0301 Neuroblastoma GIMEN 535 14 1984 190 3 218 677 VCL
SE_02_017200256 chr10:73996984-74126680 Sample_02_0172 Lung IMR-90_quiescent 256 31 3025 287 7 485 2387 AP3M1,VCL,ADK
SE_01_007000593 chr10:73997034-74080024 Sample_01_0070 Ascending aorta ascending-aorta 593 15 1945 187 3 210 668 VCL
SE_01_007800409 chr10:73997040-74060048 Sample_01_0078 Heart left ventricle heart-left-ventricle 409 14 1463 120 3 155 238 VCL
SE_02_031700306 chr10:73997062-74082056 Sample_02_0317 Neuroblastoma GICAN 306 14 1982 190 3 218 662 VCL
SE_02_017100559 chr10:73997099-74125923 Sample_02_0171 Lung IMR-90_proliferating 559 32 3006 286 7 477 2311 AP3M1,VCL,ADK
SE_02_024300118 chr10:73997104-74087276 Sample_02_0243 Foreskin foreskin_HFFs 118 16 2105 199 3 243 747 VCL
SE_02_026300180 chr10:73997140-74081236 Sample_02_0263 Osteoblastic hFOB_undifferentiated 180 15 1963 188 3 212 653 VCL
SE_02_005500792 chr10:73997188-74057518 Sample_02_0055 Lung IMR-90_Nutlin-3a 792 8 1403 113 3 155 224 VCL
SE_01_008800429 chr10:73997192-74086960 Sample_01_0088 Tibial nerve tibial-nerve 429 16 2093 199 3 243 743 VCL
SE_02_031600557 chr10:73997196-74025309 Sample_02_0316 Neuroblastoma CHP212 557 6 694 60 0 102 208 VCL
SE_00_001500380 chr10:73997302-74056861 Sample_00_0015 Lung IMR-90 380 18 1379 112 3 155 212 VCL
SE_02_005400805 chr10:73997947-74057549 Sample_02_0054 Lung IMR-90_DMSO_1 805 7 1388 111 3 148 182 VCL
SE_02_026200133 chr10:73997975-74081448 Sample_02_0262 Osteoblastic hFOB_JQ1_differentiated 133 11 1945 185 3 205 601 VCL
SE_02_008800704 chr10:73998000-74040489 Sample_02_0088 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_SGA_cycle_0 704 11 1025 79 2 109 154 VCL
SE_02_017500586 chr10:73998007-74057291 Sample_02_0175 Lung IMR-90_Etoposide 586 18 1381 110 3 148 168 VCL
SE_02_042000222 chr10:73998088-74040443 Sample_02_0420 Pectoralis major muscle LHCN-M2_dox_6h 222 9 1018 79 2 103 133 VCL
SE_02_009100643 chr10:73998095-74027315 Sample_02_0091 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_Control_cycle_0 643 4 716 61 1 91 132 VCL
SE_02_006500331 chr10:73998133-74036000 Sample_02_0065 Embryo KO2-Late_G1 331 6 891 69 2 101 126 VCL
SE_02_020901141 chr10:74008321-74057364 Sample_02_0209 Lung MRC-5_MRC5_1DPT 1141 10 1156 93 3 87 43 VCL
SE_02_001300348 chr10:74008475-74080889 Sample_02_0013 Kidney 786-O_HIF2A 348 16 1705 166 3 135 469 VCL
SE_02_024400252 chr10:74032702-74081052 Sample_02_0244 Foreskin foreskin_D11 252 9 1103 122 2 102 442 VCL
SE_03_000800365 chr10:74038815-74082820 Sample_03_0008 Lung A549_dexamethasone_7h 365 3 1010 115 1 112 489 VCL
SE_03_001500420 chr10:74039013-74082622 Sample_03_0015 Lung A549_dexamethasone_8h 420 6 993 115 1 112 476 VCL
SE_03_001300339 chr10:74039085-74082606 Sample_03_0013 Lung A549 339 3 989 115 1 112 475 VCL
SE_03_001600327 chr10:74046348-74082596 Sample_03_0016 Lung A549_dexamethasone_6h 327 2 836 100 1 101 459 VCL
SE_01_001700255 chr10:74046462-74081499 Sample_01_0017 Muscle A673 255 4 806 97 1 85 426 VCL
SE_00_002300328 chr10:74046910-74081831 Sample_00_0023 Embryo mesenchymal-stem-cell 328 5 813 98 1 88 426 VCL
SE_02_008000094 chr10:74047208-74081525 Sample_02_0080 Lung Calu-3 94 9 795 96 1 86 426 VCL
Genomic distribution of SEs associated with VCL
Genome Browser

The strength of the tissue affected by the gene

Expression of VCL

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)