Sample overview


Search result

SE ID SE Region Size Rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_032900010 chr1:149836054-149844156 8102 10 1 29 4 1 55 329 HIST2H2AA4,HIST2H3A,HIST2H2BF,HIST2H4B,HIST2H3D,HIST2H2BE,HIST2H2BC,HIST2H2AB,HIST2H2AC,HIST2H3C,HIST2H2AA3
SE_02_032900009 chr1:149849771-149857565 7794 9 1 26 0 0 54 463 HIST2H2BC,HIST2H3A,HIST2H2AA4,HIST2H2BF,BOLA1,HIST2H4B,HIST2H3D,HIST2H2BE,HIST2H2AB,HIST2H2AC,HIST2H3C,HIST2H2AA3
SE_02_032900124 chr1:149884929-149889374 4445 124 1 113 3 0 66 440 HIST2H2BE,HIST2H2AB,HIST2H2AC,BOLA1,HIST2H2BC,SF3B4,MTMR11,SV2A,HIST2H3C,HIST2H2AA3
SE_02_032900047 chr1:150565527-150581143 15616 47 2 432 47 4 75 713 MCL1,MIR4257,ADAMTSL4,ENSA
SE_02_032900066 chr1:154967210-154976385 9175 66 1 255 12 4 121 1014 SHC1,CKS1B,MIR4258,PYGO2,PBXIP1,FLAD1,ZBTB7B,PMVK,LENEP
SE_02_032900127 chr1:15833832-15837852 4020 127 1 148 18 2 11 557 FLJ37453,SPEN,UQCRHL
SE_02_032900063 chr1:17431561-17440766 9205 63 1 290 14 1 8 317 RCC2
SE_02_032900142 chr1:1743660-1747631 3971 142 1 39 5 0 0 294 SLC35E2,NADK,CDK11A,CDK11B
SE_02_032900043 chr1:214549534-214554488 4954 43 1 139 8 0 43 250 PTPN14,CENPF
SE_02_032900096 chr1:244862099-244865677 3578 96 1 114 4 0 86 371 HNRNPU,FAM36A,NCRNA00201
SE_02_032900054 chr1:26408708-26421049 12341 54 2 326 19 2 186 285 LIN28A,DHDDS,ZNF683
SE_02_032900084 chr1:28504838-28511286 6448 84 1 244 22 0 0 450 RCC1,SNHG3,TRNAU1AP
SE_02_032900099 chr1:94925043-94928904 3861 99 1 101 14 0 50 416 LOC729970,CNN3
SE_02_032900050 chr10:1308024-1317247 9223 50 1 309 13 1 59 0 ADARB2,NCRNA00200
SE_02_032900024 chr10:13346246-13353082 6836 24 1 175 15 1 57 214 SEPHS1,PHYH
SE_02_032900128 chr10:43395148-43410712 15564 128 2 448 47 0 75 707 HNRNPF,FXYD4,ZNF487P
SE_02_032900057 chr10:72259293-72275995 16702 57 2 448 46 0 129 438 DDIT4,ANAPC16,ASCC1
SE_02_032900037 chr10:73963214-73970225 7011 37 1 175 17 0 31 0 VCL,C10ORF55
SE_02_032900134 chr10:93278451-93292175 13724 134 2 450 52 20 54 0 MYOF,CEP55
SE_02_032900059 chr11:36103412-36112651 9239 59 2 281 4 1 13 0 LDLRAD3
SE_02_032900110 chr11:57636798-57641541 4743 110 1 99 5 0 51 243 MIR130A,ZDHHC5,SERPING1,YPEL4,CLP1
SE_02_032900100 chr11:62838450-62843439 4989 100 1 300 23 0 8 295 WDR74,SNORD29,SNHG1,SNORD31,SLC3A2,SNORD27,NXF1,SNORD26,STX5,SNORD30,SNORD28,SNORD22,TMEM223,SNORD25
SE_02_032900119 chr11:65853894-65863292 9398 119 1 304 27 3 134 1293 CFL1,MUS81,SNX32,CCDC85B,CTSW,EFEMP2,FIBP,FOSL1
SE_02_032900114 chr11:75561008-75567747 6739 114 1 217 26 2 68 686 SERPINH1,GDPD5
SE_02_032900048 chr11:8671051-8684943 13892 48 2 468 45 4 59 634 SNORA3,RPL27A,SNORA45,TRIM66
SE_02_032900126 chr11:95788400-95791877 3477 126 1 143 16 1 40 373 FAM76B,CEP57
SE_02_032900074 chr12:106126140-106140875 14735 74 2 402 8 0 53 573 NUAK1
SE_02_032900067 chr12:121573731-121585182 11451 67 1 252 16 1 167 538 KDM2B,ORAI1
SE_02_032900046 chr12:121799404-121804280 4876 46 1 103 7 0 110 513 LOC338799,RHOF,SETD1B
SE_02_032900032 chr12:31323022-31327284 4262 32 1 110 1 0 0 575 FLJ13224,FAM60A
SE_02_032900082 chr12:31368116-31388363 20247 82 2 523 48 1 0 728 DENND5B,FLJ13224,FAM60A
SE_02_032900014 chr12:46266407-46270600 4193 14 1 122 4 3 49 485 SLC38A1
SE_02_032900094 chr12:46370720-46384530 13810 94 2 352 12 0 75 282 SLC38A2
SE_02_032900123 chr12:52942263-52951770 9507 123 1 240 20 0 0 575 KRT18,KRT8
SE_02_032900097 chr12:57831459-57848647 17188 97 2 426 27 2 0 596 CTDSP2,AVIL,TSFM,MIR26A2
SE_02_032900105 chr12:7889497-7909789 20292 105 2 648 61 2 0 390 SLC2A3,SLC2A14
SE_02_032900137 chr12:89350136-89355385 5249 137 1 169 13 0 94 327 DUSP6
SE_02_032900071 chr13:99967416-99985679 18263 71 2 436 3 2 400 1201 ZIC2,ZIC5
SE_02_032900072 chr14:22973748-22983571 9823 72 2 263 17 0 134 923 JUB,PRMT5,C14ORF93,HAUS4
SE_02_032900041 chr14:23535879-23549387 13508 41 2 320 19 2 64 0 ZFHX2,THTPA,JPH4,AP1G2
SE_02_032900020 chr14:68789105-68798061 8956 20 1 333 6 4 175 832 C14ORF181,ZFP36L1
SE_02_032900138 chr14:74324728-74329681 4953 138 1 120 4 0 19 0 VRTN,ABCD4
SE_02_032900070 chr16:15139987-15150481 10494 70 1 385 17 0 0 0 RRN3,MIR3180-4
SE_02_032900075 chr16:2120815-2127943 7128 75 1 283 26 0 20 112 PKD1,SNORD60,TRAF7,RAB26,MIR3180-5,MIR1225
SE_02_032900108 chr16:2748483-2754545 6062 108 1 204 10 0 19 467 LOC100128788,SRRM2,TCEB2,PRSS33,PRSS41,PRSS27
SE_02_032900090 chr16:3095668-3107100 11432 90 2 328 43 0 14 121 IL32,ZNF213,ZNF205,MMP25,ZSCAN10,MGC3771
SE_02_032900026 chr16:4607596-4620289 12693 26 1 456 51 0 135 1303 FAM100A,MGRN1
SE_02_032900061 chr17:17834800-17842659 7859 61 1 169 18 1 27 174 SREBF1,MIR33B
SE_02_032900118 chr17:21040747-21044923 4176 118 1 135 16 0 0 371 USP22
SE_02_032900115 chr17:42011575-42018822 7247 115 2 188 5 0 53 226 NKIRAS2,DNAJC7,CNP
SE_02_032900064 chr17:48050378-48061842 11464 64 1 284 30 2 280 1394 NFE2L1,COPZ2,CBX1,SNX11,MIR152
SE_02_032900078 chr17:48994822-49000457 5635 78 1 143 6 0 126 305 IGF2BP1,GIP
SE_02_032900011 chr18:58844720-58868898 24178 11 2 595 10 4 174 563 ZNF532
SE_02_032900125 chr19:10652404-10656759 4355 125 1 162 13 1 38 447 ILF3,LOC147727,SLC44A2,QTRT1
SE_02_032900004 chr19:13149004-13170802 21798 4 2 564 42 1 109 902 STX10,IER2,TRMT1,NACC1,LYL1
SE_02_032900051 chr19:16074907-16083413 8506 51 1 296 27 2 28 418 TPM4,FLJ25328,RAB8A
SE_02_032900122 chr19:31415337-31425156 9819 122 1 287 12 2 173 0 TSHZ3,DKFZP566F0947
SE_02_032900001 chr19:38660416-38687656 27240 1 2 753 70 2 125 0 ACTN4,EIF3K,MAP4K1
SE_02_032900088 chr19:46781550-46788996 7446 88 1 206 27 1 39 783 SLC1A5,FKRP,STRN4,SNAR-E
SE_02_032900033 chr19:47109407-47114762 5355 33 1 153 3 0 140 324 ZC3H4,SAE1
SE_02_032900044 chr19:53592687-53614904 22217 44 2 831 37 2 0 385 LOC284379,ZNF331,DPRX
SE_02_032900120 chr19:55652462-55661327 8865 120 1 305 13 0 118 1050 U2AF2,CCDC106,EPN1,ZNF784,ZNF580,ZNF581,ZNF865
SE_02_032900073 chr2:202031552-202036700 5148 73 1 110 9 0 119 477 FZD7
SE_02_032900086 chr2:206078209-206087019 8810 86 2 206 24 0 92 312 INO80D,LOC100329109
SE_02_032900093 chr2:231678391-231683666 5275 93 1 142 4 1 33 0 PTMA,MIR1244-2
SE_02_032900003 chr2:231705398-231712953 7555 3 1 301 14 1 127 971 PTMA,MIR1244-2
SE_02_032900006 chr2:70084484-70089975 5491 6 1 176 14 0 128 686 LOC400960,PCBP1,LOC100133985
SE_02_032900016 chr2:70121177-70145191 24014 16 2 684 80 1 44 273 LOC100133985,PCBP1,LOC400960,C2ORF42
SE_02_032900053 chr2:85537068-85540838 3770 53 1 146 14 0 49 587 MAT2A,VAMP8,VAMP5,GGCX
SE_02_032900005 chr20:47313689-47326225 12536 5 1 336 2 0 29 420 ZMYND8,LOC100131496
SE_02_032900008 chr20:47351309-47363688 12379 8 2 301 3 4 120 609 ZMYND8,LOC100131496
SE_02_032900081 chr20:51797891-51803221 5330 81 1 127 19 1 0 136 SALL4,ATP9A
SE_02_032900036 chr20:62360632-62369086 8454 36 1 303 34 0 65 376 LAMA5,RPS21,CABLES2
SE_02_032900049 chr20:62924934-62939435 14501 49 2 415 32 2 17 375 DIDO1,C20ORF11,SLC17A9
SE_02_032900055 chr21:37365094-37369111 4017 55 1 113 6 1 25 159 DYRK1A
SE_02_032900058 chr22:29264974-29270166 5192 58 1 172 7 1 28 446 EWSR1,RHBDD3,GAS2L1,RASL10A
SE_02_032900092 chr22:31337856-31348243 10387 92 1 252 14 0 179 1201 PATZ1,PIK3IP1
SE_02_032900002 chr22:36321052-36337496 16444 2 1 520 17 4 72 723 MYH9
SE_02_032900091 chr22:38504406-38509761 5355 91 1 152 9 0 33 235 DDX17,KDELR3,KCNJ4
SE_02_032900021 chr22:39168619-39183444 14825 21 1 467 53 0 68 0 CBX7
SE_02_032900029 chr3:32815456-32820838 5382 29 1 141 2 0 101 271 TRIM71
SE_02_032900113 chr3:3798028-3802642 4614 113 1 144 9 0 57 507 LRRN1
SE_02_032900039 chr3:49458026-49472878 14852 39 2 317 21 2 0 387 DAG1,TCTA,NICN1,RHOA,AMT
SE_02_032900112 chr4:102825484-102829228 3744 112 1 114 12 0 81 450 UBE2D3,CISD2
SE_02_032900116 chr4:112748487-112759751 11264 116 2 311 19 0 12 0 ANK2
SE_02_032900129 chr4:122782140-122798592 16452 129 2 456 41 0 0 0 BBS12,CETN4P,FGF2
SE_02_032900034 chr4:153787494-153793746 6252 34 1 188 14 2 67 244 SFRP2,RNF175
SE_02_032900083 chr4:183096835-183100893 4058 83 1 103 1 0 53 695 C4ORF38,WWC2
SE_02_032900103 chr4:185837408-185842117 4709 103 1 163 7 1 6 0 SORBS2
SE_02_032900076 chr4:26026934-26034399 7465 76 1 213 6 1 12 0 C4ORF52
SE_02_032900109 chr5:126775750-126779472 3722 109 1 95 3 0 42 363 LMNB1
SE_02_032900056 chr5:133050399-133054213 3814 56 1 138 15 0 27 161 HSPA4,ZCCHC10
SE_02_032900136 chr5:134510329-134529023 18694 136 2 410 41 3 302 471 PHF15
SE_02_032900077 chr5:138541594-138545411 3817 77 1 90 5 0 48 311 ETF1,HSPA9,SNORD63
SE_02_032900132 chr5:139291333-139295490 4157 132 1 99 4 0 25 268 MATR3,SNORA74A,PAIP2
SE_02_032900087 chr5:142322156-142328722 6566 87 1 191 11 1 105 114 SPRY4
SE_02_032900089 chr5:149548136-149563675 15539 89 2 405 19 1 49 325 CSNK1A1,ARHGEF37
SE_02_032900012 chr5:1503839-1520862 17023 12 1 713 55 4 6 0 LPCAT1
SE_02_032900022 chr5:160157736-160172198 14462 22 2 455 23 2 24 0 PWWP2A,FABP6
SE_02_032900121 chr5:176532408-176539037 6629 121 1 187 11 1 30 419 RNF44,CDHR2
SE_02_032900060 chr5:177129795-177135708 5913 60 1 117 8 0 130 384 NSD1,FGFR4
SE_02_032900069 chr5:181240701-181249154 8453 69 1 290 43 0 31 334 GNB2L1,SNORD96A,SNORD95,TRIM41,TRIM7,TRIM52
SE_02_032900131 chr5:32172251-32175561 3310 131 1 102 8 0 30 232 GOLPH3
SE_02_032900095 chr5:74864447-74868923 4476 95 1 101 6 0 18 272 FAM169A
SE_02_032900080 chr6:156776239-156780666 4427 80 1 84 1 0 49 634 ARID1B
SE_02_032900101 chr6:158851710-158871169 19459 101 2 521 33 2 31 128 OSTCL,EZR,C6ORF99
SE_02_032900133 chr6:26155388-26159396 4008 133 1 251 11 3 14 303 HIST1H2BD,HIST1H1E,HIST1H4D,HIST1H2AC,HIST1H2BE,HIST1H3D,HIST1H2BC,HIST1H4E,HIST1H2BF,HIST1H1T,HIST1H2AD
SE_02_032900139 chr6:27836192-27840131 3939 139 1 109 10 3 45 223 HIST1H2AK,HIST1H2BN,HIST1H3H,HIST1H2AL,HIST1H3I,HIST1H2BM,HIST1H2AJ,HIST1H4K,HIST1H2AI,HIST1H4L,HIST1H2BL,HIST1H4J,HIST1H1B
SE_02_032900135 chr6:27863540-27868428 4888 135 1 193 19 2 47 300 HIST1H1B,HIST1H2AL,HIST1H2AM,HIST1H3I,HIST1H4J,HIST1H2BM,HIST1H2AJ,HIST1H4K,HIST1H2BN,HIST1H4L,HIST1H3J,HIST1H2BO,OR2B2,HIST1H2AK
SE_02_032900068 chr6:27888877-27896384 7507 68 1 204 16 3 40 317 HIST1H2BO,HIST1H3J,HIST1H2AM,HIST1H3I,HIST1H4L,HIST1H2AL,OR2B2,HIST1H1B
SE_02_032900111 chr6:31168029-31176635 8606 111 1 281 91 15 0 419 PSORS1C3,POU5F1,HCG27,CCHCR1,CDSN,PSORS1C2,TCF19
SE_02_032900015 chr6:32967513-32973924 6411 15 1 255 37 5 147 867 BRD2,HLA-DMA,HLA-DOA,HLA-DMB
SE_02_032900023 chr6:34233415-34242374 8959 23 1 313 13 0 113 527 HMGA1,C6ORF1
SE_02_032900028 chr6:35467482-35499226 31744 28 3 904 71 4 203 2537 TULP1,TEAD3,RPL10A,FANCE
SE_02_032900098 chr6:37133462-37141712 8250 98 1 201 16 1 40 0 PIM1
SE_02_032900141 chr6:42781620-42784637 3017 141 1 64 4 0 16 93 TBCC,KIAA0240
SE_02_032900079 chr6:43169535-43175243 5708 79 1 109 4 0 149 579 SRF,CUL9
SE_02_032900130 chr6:63571176-63574699 3523 130 1 98 1 0 26 236 PTP4A1
SE_02_032900062 chr6:73519485-73524558 5073 62 1 150 20 2 34 280 EEF1A1
SE_02_032900040 chr6:73564285-73581951 17666 40 2 553 62 2 12 0 EEF1A1
SE_02_032900140 chr6:89676945-89691558 14613 140 2 399 30 1 34 711 MDN1,LYRM2
SE_02_032900085 chr7:100427787-100437834 10047 85 1 320 24 2 187 1534 MEPCE,ZCWPW1,C7ORF47,TSC22D4,C7ORF61,C7ORF51
SE_02_032900042 chr7:105011429-105016037 4608 42 1 146 3 0 94 630 MLL5,LOC100216545
SE_02_032900018 chr7:131599593-131608824 9231 18 1 289 0 3 27 0 PODXL
SE_02_032900106 chr7:149143167-149150176 7009 106 1 149 21 0 11 299 ZNF398,ZNF282,ZNF425
SE_02_032900038 chr7:150395178-150410289 15111 38 1 426 29 2 112 1267 ZNF775,LOC728743,REPIN1,GIMAP8,LOC285972
SE_02_032900031 chr7:157306530-157315005 8475 31 1 250 25 0 0 0 DNAJB6
SE_02_032900019 chr7:23467060-23475758 8698 19 2 186 10 0 111 262 IGF2BP3,RPS2P32
SE_02_032900052 chr7:26199018-26203142 4124 52 1 220 2 0 55 386 HNRNPA2B1,CBX3,NFE2L3
SE_02_032900013 chr7:5525467-5534887 9420 13 1 393 21 2 133 674 ACTB,MIR589,FBXL18
SE_02_032900117 chr7:66843578-66848178 4600 117 1 116 16 0 0 107 LOC729156
SE_02_032900035 chr7:71454470-71473258 18788 35 3 602 1 0 17 0 WBSCR17,MIR3914-1
SE_02_032900107 chr7:74654381-74662227 7846 107 1 147 12 0 28 199 GTF2I
SE_02_032900007 chr8:127805908-127824940 19032 7 2 508 20 2 14 0 PVT1,MIR1204
SE_02_032900030 chr8:22593100-22599233 6133 30 1 179 17 0 28 904 PDLIM2,KIAA1967,SORBS3,C8ORF58,FLJ14107
SE_02_032900065 chr8:26633331-26644569 11238 65 1 339 30 3 59 258 DPYSL2
SE_02_032900025 chr8:30383170-30399062 15892 25 2 382 10 1 71 463 RBPMS
SE_02_032900102 chr9:106859451-106865405 5954 102 1 132 6 0 151 121 ZNF462
SE_02_032900045 chr9:135334498-135351023 16525 45 1 687 3 1 27 572 KIAA0649
SE_02_032900104 chr9:78294475-78298485 4010 104 1 110 9 1 14 104 PSAT1
SE_02_032900017 chrX:153963394-153975108 11714 17 1 251 10 1 136 699 HCFC1,TMEM187,MIR718,ARHGAP4,MIR3202-1,NAA10,RENBP,MIR3202-2,IRAK1
SE_02_032900027 chrX:2798572-2806570 7998 27 1 204 12 0 0 11 XG,XGPY2,GYG2

SE annotation visualization


Information description of sample and annotation

Case ID: Name:GSM2648926
Input ID: Name:GSM2648930
Common SNP: dbSNP
eQTL: GTEx, HaploReg v4.1, PancanQTL
Risk SNP : GWAS Catalog, GWASdb v2.0
TFBS: TFBS Conserved of UCSC
CRISPR/Cas9 target site: CRISPR Targets of UCSC

Software and parameters used

Read Mapping: bowtie(v2.4.4) -p 10 -x -S -U
Peak Calling: macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb