SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000162607
Gene: USP1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr1:62436297-62451804 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_037000032 chr1:62285872-62387947 Sample_02_0370 Skeletal muscle RH4 32 18 2889 165 9 174 158 KANK4,USP1
SE_02_141300018 chr1:62286342-62407513 Sample_02_1413 Muscle RH4_sgBRG1 18 38 3389 181 9 193 158 KANK4,USP1
SE_02_074000061 chr1:62293939-62387826 Sample_02_0740 Muscle RH3 61 28 2680 145 9 163 158 KANK4,USP1
SE_02_147500869 chr1:62381910-62395303 Sample_02_1475 Bone CHLA-25 869 4 333 18 2 24 0 USP1
SE_02_077502078 chr1:62398608-62448035 Sample_02_0775 Pancreas EndoC-BH1_SE 2078 11 1295 52 20 108 569 USP1,KANK4
SE_02_076100178 chr1:62400667-62458321 Sample_02_0761 Ovary BIN-67_SMARCA4.T910M 178 15 1531 75 35 185 834 USP1,DOCK7
SE_02_075900212 chr1:62406570-62447960 Sample_02_0759 Ovary BIN-67_Control 212 14 1049 45 20 108 569 USP1
SE_02_076000342 chr1:62417977-62453996 Sample_02_0760 Ovary BIN-67_SMARCA4 342 8 986 53 27 161 714 USP1
SE_02_062900604 chr1:62419645-62440903 Sample_02_0629 Gastrointestinal Stromal GIST-T1_DMSO 604 4 570 28 12 76 365 USP1
SE_02_080800803 chr1:62420622-62439483 Sample_02_0808 Ovary RMG1_ARID1A KO 803 11 517 21 9 66 330 USP1
SE_02_041000171 chr1:62422956-62445479 Sample_02_0410 Brain BT16_NoDox 171 2 611 32 16 92 529 USP1
SE_02_012400411 chr1:62423077-62439181 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 411 2 443 19 9 60 330 USP1
SE_02_040700119 chr1:62423141-62445802 Sample_02_0407 Brain BT16 119 3 616 35 17 92 533 USP1
SE_02_011400398 chr1:62423348-62440172 Sample_02_0114 Mammary gland CAL51 398 3 468 20 9 67 358 USP1
SE_02_039700234 chr1:62423425-62439491 Sample_02_0397 Mammary gland CAL51-MCF-7 234 4 453 20 9 60 330 USP1
SE_02_078000613 chr1:62423707-62439536 Sample_02_0780 Liver SMMC-7721 613 3 450 20 9 60 330 USP1
SE_02_081800810 chr1:62424763-62438751 Sample_02_0818 Ovary High-grade serous ovarian cancer 810 2 393 16 8 60 330 USP1
SE_02_059000297 chr1:62424786-62440080 Sample_02_0590 Cervix HeLa Kyoto_Luci PWWP2A siRNA 297 5 431 18 9 67 355 USP1
SE_02_058900552 chr1:62424855-62439609 Sample_02_0589 Cervix HeLa Kyoto_Luci siRNA 552 5 418 18 8 60 330 USP1
SE_02_058800705 chr1:62425286-62439208 Sample_02_0588 Cervix HeLa Kyoto_untreated 705 4 391 17 8 60 330 USP1
SE_02_081700888 chr1:62425365-62439046 Sample_02_0817 Ovary Epithelial ovarian cancer 888 3 386 17 8 60 330 USP1
SE_01_003600584 chr1:62426224-62438959 Sample_01_0036 Cervix HeLa-S3 584 2 366 17 8 59 330 USP1
SE_02_147800672 chr1:62427655-62441950 Sample_02_1478 Bone EW-3 672 5 386 24 13 56 391 USP1
SE_02_147500992 chr1:62427669-62441475 Sample_02_1475 Bone CHLA-25 992 4 374 23 12 54 371 USP1
SE_02_031000789 chr1:62427696-62441400 Sample_02_0310 Neuroblastoma SJNB8 789 2 367 23 12 54 368 USP1
SE_02_147400456 chr1:62428051-62440438 Sample_02_1474 Bone CHLA-10 456 4 345 18 9 53 365 USP1
SE_02_069400090 chr1:62428165-62439391 Sample_02_0694 Lung NCI-H82_no infection 90 3 313 15 8 46 330 USP1
SE_02_108300760 chr1:62428839-62456466 Sample_02_1083 Macula macula 760 8 780 53 31 148 780 USP1,DOCK7
SE_02_076500609 chr1:62434602-62438737 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 609 1 146 9 6 38 330 USP1
SE_00_004300859 chr1:62434907-62438414 Sample_00_0043 Stomach stomach_96d 859 1 130 8 5 37 330 USP1
SE_02_140500040 chr1:62434972-62440157 Sample_02_1405 Embryonic kidney HEK293_siBAHD1_W667G_mutant 40 2 179 11 7 45 358 USP1
SE_02_101701588 chr1:62435021-62441313 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1588 3 203 18 11 45 365 USP1
SE_00_002500939 chr1:62435042-62438835 Sample_00_0025 Muscle of leg muscle-of-leg 939 1 136 9 6 38 330 USP1
SE_02_068800250 chr1:62435092-62439808 Sample_02_0688 Lung NCI-H211_no infection 250 3 169 11 7 38 341 USP1
SE_02_111200919 chr1:62435103-62440279 Sample_02_1112 T lymphocyte THP-6 T-ALL 919 1 181 12 8 45 365 USP1
SE_02_058000930 chr1:62435201-62441053 Sample_02_0580 Blood HEL_sgSIK3e4 930 2 190 15 10 45 365 USP1
SE_02_006900644 chr1:62435209-62438649 Sample_02_0069 Brain SF268 644 1 129 7 6 38 330 USP1
SE_02_039500665 chr1:62435209-62438844 Sample_02_0395 Mammary gland BT-549 665 1 130 7 6 38 330 USP1
SE_02_057700771 chr1:62435245-62440251 Sample_02_0577 Blood MOLM13_empty 771 1 172 10 8 45 365 USP1
SE_02_055500495 chr1:62435246-62440261 Sample_02_0555 Other HAP1_WT 495 1 173 10 8 45 365 USP1
SE_02_148000703 chr1:62435261-62441299 Sample_02_1480 Bone MHH-ES-1 703 2 192 16 11 45 365 USP1
SE_02_035500488 chr1:62435278-62439003 Sample_02_0355 Colon HCT15 488 1 131 8 7 38 330 USP1
SE_02_064000615 chr1:62435287-62439573 Sample_02_0640 Mammary gland MDA-MB-436_DMSO 615 2 153 9 7 38 330 USP1
SE_02_075001031 chr1:62435291-62440263 Sample_02_0750 Lymphoma Rec-1_GSI 1031 3 171 10 8 45 365 USP1
SE_02_068200486 chr1:62435299-62439460 Sample_02_0682 Blood Kasumi-1 486 2 151 9 7 38 330 USP1
SE_02_057800727 chr1:62435306-62440036 Sample_02_0578 Blood MOLM-13_sgSIK3e4 727 2 161 9 7 45 355 USP1
SE_02_122301190 chr1:62435314-62439306 Sample_02_1223 Bone marrow KMS28BM 1190 1 142 9 7 38 330 USP1
SE_02_058100761 chr1:62435325-62440129 Sample_02_0581 Blood MOLM13_empty_HG 761 2 161 9 7 45 357 USP1
SE_00_003901130 chr1:62435328-62438351 Sample_00_0039 Spleen spleen_3y 1130 1 110 6 5 37 330 USP1
SE_02_081900959 chr1:62435343-62439569 Sample_02_0819 Ovary Mucinous ovarian cancer 959 1 145 9 7 38 330 USP1
SE_02_057900922 chr1:62435353-62440953 Sample_02_0579 Blood HEL_sgNeg2 922 2 174 15 10 45 365 USP1
SE_02_057400751 chr1:62435362-62439977 Sample_02_0574 Blood MOLM-13_sgNeg2 751 2 150 9 7 45 354 USP1
SE_02_057601029 chr1:62435373-62441326 Sample_02_0576 Blood HEL_sgLKB1e2 1029 3 181 16 11 45 367 USP1
SE_02_068500214 chr1:62435380-62438761 Sample_02_0685 Lung NCI-H1048_no infection 214 1 114 7 6 38 330 USP1
SE_02_064501024 chr1:62435394-62438913 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1024 1 119 8 7 38 330 USP1
SE_02_057500754 chr1:62435422-62439972 Sample_02_0575 Blood MOLM13_sgLKB1e2 754 2 146 9 7 45 354 USP1
SE_02_061001255 chr1:62435473-62439024 Sample_02_0610 Liposarcoma MLS 1765-92 1255 1 115 8 7 38 330 USP1
SE_02_103800414 chr1:62435487-62453035 Sample_02_1038 Pharynx FaDu LPS 414 4 513 38 24 128 714 USP1
SE_02_103700391 chr1:62435516-62439121 Sample_02_1037 Pharynx FaDu Control 391 1 118 8 7 38 330 USP1
SE_02_140400102 chr1:62436479-62439833 Sample_02_1404 Embryonic kidney HEK293_siBAHD1_WT 102 1 111 7 5 31 274 USP1
SE_02_111400127 chr1:62436555-62440320 Sample_02_1114 Embryonic kidney HEK293 127 2 123 8 6 37 285 USP1
SE_02_068600366 chr1:62436583-62440094 Sample_02_0686 Lung NCI-H128_no infection 366 2 115 7 5 36 264 USP1
Genomic distribution of SEs associated with USP1
Genome Browser

The strength of the tissue affected by the gene

Expression of USP1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)