SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000160181
Gene: TFF2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr21:42346357-42350997 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104900103 chr21:42145737-42320269 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 103 93 5818 326 30 256 2696 ABCG1,TFF3,UMODL1-AS1,TFF1,TFF2
SE_02_104600215 chr21:42208933-42322157 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 215 56 3887 171 25 231 2542 ABCG1,TFF3,TFF1,TFF2
SE_02_003300467 chr21:42219143-42316371 Sample_02_0033 Pancreas pancreatic-islets-F 467 13 3307 116 25 219 2429 ABCG1,TFF3,TFF2
SE_02_110500188 chr21:42221226-42320382 Sample_02_1105 Brain NBL-S 188 45 3405 129 24 209 2199 ABCG1,TFF3,TFF1,TFF2
SE_02_104300314 chr21:42224302-42319895 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 314 41 3286 121 24 200 2151 ABCG1,TFF3,TFF1,TFF2
SE_02_077501078 chr21:42292608-42343222 Sample_02_0775 Pancreas EndoC-BH1_SE 1078 14 1726 125 6 32 1109 ABCG1,TFF3,TMPRSS3,TFF2,TFF1
SE_02_035400613 chr21:42297509-42321565 Sample_02_0354 Colon Colo205 613 3 845 52 2 13 707 TFF3,TFF2,TFF1
SE_02_107800573 chr21:42301535-42318401 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 573 5 583 29 2 9 393 TFF3,TFF2,TFF1
SE_02_128300060 chr21:42301812-42319967 Sample_02_1283 Lung NCI-H2107_p8-15 60 7 634 33 2 9 393 TFF3,TFF2,TFF1
SE_02_129000313 chr21:42301938-42319042 Sample_02_1290 Lung NCI-H69_p8-15 313 5 593 29 2 9 393 TFF3,TFF2,TFF1
SE_02_068600245 chr21:42302217-42319721 Sample_02_0686 Lung NCI-H128_no infection 245 9 605 28 2 9 393 TFF3,TFF2,TFF1
SE_02_068700519 chr21:42306325-42343072 Sample_02_0687 Lung NCI-H146_no infection 519 11 1250 98 5 9 393 TFF3,TMPRSS3,TFF2,TFF1
SE_02_129400078 chr21:42306839-42319960 Sample_02_1294 Lung JHU-LX44-SCLC PDX 78 9 461 24 2 9 393 TFF3,TFF2,TFF1
SE_01_007900862 chr21:42309166-42338803 Sample_01_0079 Peyers patch Peyers-patch 862 4 990 85 5 9 393 TFF3,TFF2,TFF1
SE_02_047800702 chr21:42309343-42333576 Sample_02_0478 Colon normal colon mucosa 702 12 808 70 5 9 393 TFF3,TFF2,TFF1
SE_02_047700265 chr21:42309452-42338505 Sample_02_0477 Colon intestinal epithelial organoids_139a 265 8 967 84 5 9 393 TFF3,TFF2,TFF1
SE_00_003600470 chr21:42310540-42338672 Sample_00_0036 Small intestine small-intestine_108days 470 4 937 84 4 9 393 TFF3,TFF2,TFF1
SE_00_002000340 chr21:42310567-42338842 Sample_00_0020 Large intestine large-intestine_108d 340 4 946 85 4 9 393 TFF3,TFF2,TFF1
SE_02_129200070 chr21:42310743-42319948 Sample_02_1292 Lung JHU-LX110-SCLC PDX 70 5 320 21 1 9 393 TFF3,TFF2,TFF1
SE_02_129500074 chr21:42312328-42318418 Sample_02_1295 Lung JHU-LX48-SCLC PDX 74 3 202 12 1 9 279 TFF3,TFF2,TFF1
SE_02_068500557 chr21:42334818-42338627 Sample_02_0685 Lung NCI-H1048_no infection 557 3 112 12 0 0 0 TFF3,TFF2,TFF1
SE_02_151100647 chr21:42352725-42373658 Sample_02_1511 Lung H3122_untreated 647 9 828 77 6 22 427 TFF1,TMPRSS3,TFF2,UBASH3A,TFF3
SE_02_025700433 chr21:42355244-42386228 Sample_02_0257 Endometrioid endometrioid_adenocarcinoma_TumorA 433 5 1224 98 7 83 1220 TMPRSS3,TFF1,TFF2,UBASH3A,TFF3
SE_02_009600177 chr21:42356474-42368614 Sample_02_0096 Mammary gland ZR-75-1_1 177 1 469 49 3 14 246 TFF1,TFF2,UBASH3A,TMPRSS3,TFF3
SE_02_066300769 chr21:42356595-42368988 Sample_02_0663 Thyroid TT 769 4 478 47 3 14 246 TFF1,TFF2,UBASH3A,TMPRSS3,TFF3
SE_02_081800542 chr21:42356635-42397259 Sample_02_0818 Ovary High-grade serous ovarian cancer 542 11 1536 123 7 111 1778 TFF1,TMPRSS3,TFF2,UBASH3A,TFF3
SE_02_071000703 chr21:42356946-42386892 Sample_02_0710 Pancreas hN34_organoid 703 8 1178 85 6 83 1220 TFF1,TMPRSS3,TFF2,UBASH3A,TFF3
SE_02_077502362 chr21:42359472-42379483 Sample_02_0775 Pancreas EndoC-BH1_SE 2362 6 813 53 2 49 644 TFF1,TMPRSS3,TFF2,UBASH3A,TFF3
SE_01_004600198 chr21:42359754-42381883 Sample_01_0046 Mammary gland MCF-7 198 3 900 54 2 52 754 TMPRSS3,TFF1,TFF2,UBASH3A,TFF3
SE_02_085300140 chr21:42360059-42392600 Sample_02_0853 Mammary gland MCF7L-TamR 140 6 1265 80 5 100 1536 TFF1,TMPRSS3,TFF2,UBASH3A,TFF3
SE_02_062600205 chr21:42360630-42392116 Sample_02_0626 Mammary gland WS8_E2 205 4 1234 75 5 99 1536 TFF1,TMPRSS3,TFF2,UBASH3A,TFF3
SE_02_027900130 chr21:42360640-42368553 Sample_02_0279 Retina RB 130 5 308 17 1 11 246 TFF1,TFF2,UBASH3A,TMPRSS3,TFF3
SE_02_125800656 chr21:42360687-42368581 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 656 1 303 15 1 11 246 TFF1,TFF2,UBASH3A,TMPRSS3,TFF3
SE_02_062300255 chr21:42360718-42391653 Sample_02_0623 Mammary gland TAMR_E2 255 4 1216 73 5 99 1536 TFF1,TMPRSS3,TFF2,UBASH3A,TFF3
SE_02_052600081 chr21:42361211-42392409 Sample_02_0526 Mammary gland MCF7 TRPS1 KO 81 16 1216 70 5 99 1536 TFF1,TMPRSS3,TFF2,UBASH3A,TFF3
SE_02_056500175 chr21:42361277-42378598 Sample_02_0565 Mammary gland MCF7L-P_E2_16h 175 8 697 38 2 48 644 TFF1,TMPRSS3,TFF2,UBASH3A,TFF3
SE_02_157500169 chr21:42361344-42381534 Sample_02_1575 Mammary gland MCF7_Mock 169 9 817 44 2 51 737 TFF1,TMPRSS3,TFF2,UBASH3A,TFF3
SE_02_066700142 chr21:42361383-42377860 Sample_02_0667 Mammary gland MCF7_FA 142 4 676 37 2 48 644 TFF1,TMPRSS3,TFF2,UBASH3A,TFF3
SE_02_052700141 chr21:42361425-42392046 Sample_02_0527 Mammary gland MCF7_WT 141 15 1202 69 5 99 1536 TFF1,TMPRSS3,TFF2,UBASH3A,TFF3
SE_02_049600034 chr21:42361579-42378310 Sample_02_0496 Mammary gland C49R 34 9 683 38 2 48 644 TFF1,TMPRSS3,TFF2,UBASH3A,TFF3
SE_02_011500235 chr21:42361949-42378489 Sample_02_0115 Mammary gland MCF-7 235 2 680 37 2 48 644 TMPRSS3,TFF1,TFF2,UBASH3A,TFF3,TPRSS3
SE_02_157600192 chr21:42362224-42380522 Sample_02_1576 Mammary gland MCF7_CPI-455 192 10 757 41 2 51 711 TFF1,TMPRSS3,TFF2,UBASH3A,TFF3
SE_02_152400577 chr21:42362225-42381343 Sample_02_1524 Lung H3122 DMSO 577 5 786 43 2 51 711 TFF1,TMPRSS3,TFF2,UBASH3A,TFF3
SE_02_077700187 chr21:42362492-42392055 Sample_02_0777 Mammary gland MCF7_TAMR 187 3 1167 68 5 99 1480 TFF1,TMPRSS3,TFF2,UBASH3A,TFF3
SE_02_047500955 chr21:42365528-42401771 Sample_02_0475 Induced hepatocyte-like cells hepatocyte-like cells 955 7 1371 103 5 104 1622 TFF1,TMPRSS3,TFF2,UBASH3A,TFF3
SE_02_022100107 chr21:42367155-42428985 Sample_02_0221 Blood CCRF-CEM 107 6 2247 216 12 161 2235 UBASH3A,TMPRSS3,TFF2,TFF1
SE_02_022600419 chr21:42367248-42427558 Sample_02_0226 Blood KOPTK1 419 7 2190 214 11 161 2235 UBASH3A,TMPRSS3,TFF2,TFF1
SE_02_078200237 chr21:42368279-42427397 Sample_02_0782 Blood MEC1 237 12 2145 211 11 161 2235 TMPRSS3,UBASH3A,TFF2,TFF1
SE_02_098800870 chr21:42369542-42399046 Sample_02_0988 Blood K562_EPZ 870 7 1117 80 4 97 1532 TMPRSS3,TFF2,UBASH3A,TFF1
SE_02_109900242 chr21:42370082-42406616 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 242 14 1364 128 7 111 1729 TMPRSS3,UBASH3A,TFF2,TFF1
SE_01_004300450 chr21:42372457-42428886 Sample_01_0043 Blood KOPT-K1 450 7 2037 200 11 159 2136 UBASH3A,TMPRSS3,TFF2,TFF1
SE_02_012600068 chr21:42373421-42466194 Sample_02_0126 Blood Induced-regulatory-T-cells_DMSO 68 12 3206 312 24 184 2732 UBASH3A,TMPRSS3,TFF2,RSPH1,TFF1,SLC37A1
SE_02_045600063 chr21:42375016-42465989 Sample_02_0456 Th17 lymphocytes Th17-IL-10- Day 0 63 18 3119 306 24 182 2732 TMPRSS3,UBASH3A,RSPH1,TFF2,TFF1,SLC37A1
SE_02_104900101 chr21:42375424-42470294 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 101 65 3235 312 24 182 2732 TMPRSS3,UBASH3A,RSPH1,TFF2,TFF1,SLC37A1
SE_02_078300039 chr21:42379160-42476440 Sample_02_0783 Blood MEC2 39 29 3283 330 24 153 2703 RSPH1,TMPRSS3,UBASH3A,TFF2,TFF1,SLC37A1
SE_00_002000943 chr21:42383284-42402512 Sample_00_0020 Large intestine large-intestine_108d 943 3 666 66 4 46 809 TMPRSS3,TFF2,TFF1,UBASH3A
SE_00_003601022 chr21:42383503-42402482 Sample_00_0036 Small intestine small-intestine_108days 1022 3 659 65 4 46 753 TMPRSS3,TFF2,TFF1,UBASH3A
SE_02_122900684 chr21:42383926-42411184 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 684 16 927 109 7 70 925 TMPRSS3,UBASH3A,TFF2,TFF1
SE_02_122700268 chr21:42384560-42423538 Sample_02_1227 Bone marrow U266 268 11 1348 163 10 98 1259 TMPRSS3,UBASH3A,TFF2,TFF1
SE_02_012800202 chr21:42387032-42465377 Sample_02_0128 Haematopoietic and lymphoid tissue ALL-SIL 202 20 2646 275 22 120 1939 UBASH3A,TMPRSS3,TFF2,RSPH1,TFF1,SLC37A1
SE_02_013200057 chr21:42390574-42466194 Sample_02_0132 Lung 1015_CL 57 10 2521 270 21 102 1624 UBASH3A,TMPRSS3,TFF2,RSPH1,TFF1,SLC37A1
SE_02_012700086 chr21:42391262-42466076 Sample_02_0127 Blood Induced-regulatory-T-cells_CPI-703 86 13 2501 267 21 101 1623 UBASH3A,TMPRSS3,TFF2,RSPH1,TFF1,SLC37A1
SE_02_013100062 chr21:42391262-42466076 Sample_02_0131 Lung 1015_PT 62 14 2501 267 21 101 1623 UBASH3A,TMPRSS3,TFF2,RSPH1,TFF1,SLC37A1
SE_00_000700134 chr21:42392538-42462649 Sample_00_0007 Blood naive thymus-derived CD4-positive,alpha-beta T cell 134 8 2385 254 21 101 1623 UBASH3A,TMPRSS3,TFF2,RSPH1,TFF1,SLC37A1
SE_02_023400587 chr21:42392700-42426752 Sample_02_0234 Tonsil Th17 587 7 1162 148 7 73 901 UBASH3A,TMPRSS3,TFF2,TFF1
SE_00_004400638 chr21:42392770-42426624 Sample_00_0044 Cord blood T-cell 638 6 1157 148 7 73 884 UBASH3A,TMPRSS3,TFF2,TFF1
SE_02_059300377 chr21:42392865-42425693 Sample_02_0593 Fetal spleenocytes fetal naive T cells 377 7 1117 145 7 72 874 TMPRSS3,UBASH3A,TFF2,TFF1
SE_02_045700076 chr21:42392876-42426518 Sample_02_0457 Th17 lymphocytes Th17-IL-10- Day 5 76 9 1147 146 7 72 874 TMPRSS3,UBASH3A,TFF2,TFF1
SE_02_059100500 chr21:42392978-42425268 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 500 6 1104 145 7 70 874 TMPRSS3,UBASH3A,TFF2,TFF1
SE_02_045400105 chr21:42393181-42467042 Sample_02_0454 Th17 lymphocytes Th17-IL-10+ Day 0 105 18 2484 266 21 101 1623 TMPRSS3,UBASH3A,RSPH1,TFF2,TFF1,SLC37A1
SE_02_057600782 chr21:42393338-42406885 Sample_02_0576 Blood HEL_sgLKB1e2 782 3 477 73 4 23 439 TMPRSS3,UBASH3A,TFF2,TFF1
SE_02_057900825 chr21:42393610-42406899 Sample_02_0579 Blood HEL_sgNeg2 825 4 472 71 4 23 439 TMPRSS3,UBASH3A,TFF2,TFF1
SE_02_034900198 chr21:42396884-42428687 Sample_02_0349 Peripheral blood CUTLL1_dimer-mutant 198 5 1125 136 8 66 727 UBASH3A,TFF2,TFF1,TMPRSS3
SE_02_024700322 chr21:42396889-42408750 Sample_02_0247 Haematopoietic and lymphoid tissue MOLT4_2 322 1 429 64 4 16 221 UBASH3A,TFF2,TFF1,TMPRSS3
SE_02_003500327 chr21:42397419-42428940 Sample_02_0035 Peripheral blood CUTLL1_GSI_wash 327 7 1103 134 8 64 703 UBASH3A,TFF2,TFF1,TMPRSS3
SE_02_017600272 chr21:42397441-42429030 Sample_02_0176 Peripheral blood LOUCY 272 4 1105 133 8 64 703 UBASH3A,TFF2,TFF1,TMPRSS3
SE_02_034800240 chr21:42397488-42429328 Sample_02_0348 Peripheral blood CUTLL1_wild-type 240 5 1107 133 8 64 703 UBASH3A,TFF2,TFF1,TMPRSS3
SE_02_003400332 chr21:42397597-42428535 Sample_02_0034 Peripheral blood CUTLL1_GSI 332 5 1076 132 8 64 703 UBASH3A,TFF2,TFF1,TMPRSS3
SE_01_002500063 chr21:42397714-42465514 Sample_01_0025 Haematopoietic and lymphoid tissue blood DND-41 63 15 2281 242 21 92 1381 UBASH3A,TFF2,RSPH1,TFF1,TMPRSS3,SLC37A1
SE_02_003100310 chr21:42397861-42429088 Sample_02_0031 Haematopoietic and lymphoid tissue blood Jurkat 310 3 1085 132 8 64 703 UBASH3A,TFF2,TFF1,TMPRSS3
SE_02_111200180 chr21:42398480-42465996 Sample_02_1112 T lymphocyte THP-6 T-ALL 180 12 2263 243 21 92 1381 UBASH3A,RSPH1,TFF2,TFF1,TMPRSS3,SLC37A1
SE_02_104000044 chr21:42398493-42476991 Sample_02_1040 Peripheral blood CD4+ cells_CTCL1126 44 28 2624 278 21 93 1569 UBASH3A,RSPH1,TFF2,TFF1,TMPRSS3,SLC37A1
SE_02_022300028 chr21:42399788-42431843 Sample_02_0223 Haematopoietic and lymphoid tissue MOLT4_1 28 2 1108 131 8 63 703 UBASH3A,TFF2,TFF1,TMPRSS3
SE_02_104200126 chr21:42400150-42456974 Sample_02_1042 Peripheral blood CD4+ cells_CTCL1137 126 19 1946 205 19 90 1381 UBASH3A,RSPH1,TFF2,TFF1,TMPRSS3,SLC37A1
SE_02_023300497 chr21:42400180-42426486 Sample_02_0233 Tonsil Th1 497 5 899 117 7 62 632 UBASH3A,TFF2,TFF1,TMPRSS3
SE_02_022500253 chr21:42400266-42427593 Sample_02_0225 Haematopoietic and lymphoid tissue PF-382 253 3 943 121 7 63 703 UBASH3A,TFF2,TFF1,TMPRSS3
SE_02_045500246 chr21:42400495-42427285 Sample_02_0455 Th17 lymphocytes Th17-IL-10+ Day 5 246 10 929 120 7 63 703 UBASH3A,TFF2,TFF1,TMPRSS3
SE_00_000800188 chr21:42401031-42426950 Sample_00_0008 Blood CD4-positive-alpha-beta-memory-T-cell 188 3 895 118 7 63 676 UBASH3A,TFF2,TFF1,TMPRSS3
Genomic distribution of SEs associated with TFF2
Genome Browser

The strength of the tissue affected by the gene

Expression of TFF2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)