SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000186907
Gene: RTN4RL2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr11:57460528-57477534 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_04_000200490 chr11:57382374-57433807 Sample_04_0002 Blood cold shocked K562 490 9 1446 142 6 143 2118 SLC43A3,PRG2,PRG3,SSRP1,RTN4RL2,P2RX3,TNKS1BP1,RP11-872D17.8,SLC43A1,UBE2L6,TIMM10
SE_02_109500045 chr11:57382791-57445450 Sample_02_1095 Blood CD34 Erythroid cells_Don002 45 13 1764 177 10 163 2118 SLC43A3,PRG2,PRG3,SSRP1,RTN4RL2,P2RX3
SE_02_146700466 chr11:57383110-57433582 Sample_02_1467 Blood HUDEP-2_LRFKO 466 13 1425 142 6 133 2118 SLC43A3,PRG2,PRG3,SSRP1,RTN4RL2,P2RX3
SE_02_109600029 chr11:57383191-57457347 Sample_02_1096 Blood CD34 Erythroid cells_Don003 29 16 2043 191 10 182 2188 SLC43A3,PRG2,PRG3,SSRP1,RTN4RL2,P2RX3
SE_02_146600335 chr11:57386550-57427763 Sample_02_1466 Blood HUDEP-2_BCL11AKO 335 6 1172 120 5 105 2117 SLC43A3,PRG2,PRG3,RTN4RL2,P2RX3
SE_02_146800529 chr11:57386835-57433518 Sample_02_1468 Blood HUDEP-2_WT 529 15 1317 135 5 126 2118 SLC43A3,PRG2,PRG3,RTN4RL2,P2RX3
SE_02_132000269 chr11:57387506-57435287 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 269 19 1327 138 5 150 2060 SLC43A3,PRG2,PRG3,RTN4RL2,P2RX3,SERPING1,SLC43A1,SSRP1,ZDHHC5,TMX2,TNKS1BP1,C11orf31,UBE2L6
SE_02_043100076 chr11:57391481-57445491 Sample_02_0431 Peripheral blood CD34+HSPC-derived-erythroid-precursors 76 11 1511 163 8 144 1601 SLC43A3,RTN4RL2,PRG2,PRG3
SE_02_093000325 chr11:57391815-57446572 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 325 31 1524 164 8 145 1601 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_136300180 chr11:57394325-57427706 Sample_02_1363 Blood Hudep2 180 8 939 99 4 89 1581 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_104301781 chr11:57395356-57432920 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1781 11 1045 108 3 111 1601 SLC43A3,PRG2,RTN4RL2,PRG3
SE_01_003900373 chr11:57395507-57433243 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 373 8 1044 108 3 111 1601 SLC43A3,RTN4RL2,PRG2,PRG3,RP11-872D17.8,SSRP1
SE_02_008400181 chr11:57402033-57446970 Sample_02_0084 Oral cavity KB_5Z-7-oxozeaenol 181 7 1236 126 6 124 1539 SLC43A3,RTN4RL2,PRG2,PRG3
SE_02_122901084 chr11:57402330-57433887 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 1084 14 865 86 2 107 1539 SLC43A3,PRG2,RTN4RL2,PRG3,SSRP1,RP11-872D17.8,SLC43A1,UBE2L6,TIMM10,TNKS1BP1
SE_02_094900816 chr11:57402522-57432718 Sample_02_0949 Umbilical artery HUAEC_WT 816 17 830 84 2 91 1539 SLC43A3,PRG2,RTN4RL2,PRG3
SE_01_005400155 chr11:57403185-57428190 Sample_01_0054 Haematopoietic and lymphoid tissue OCI-LY3 155 1 699 71 2 71 1539 SLC43A3,RTN4RL2,PRG2,PRG3
SE_02_002700738 chr11:57405033-57427939 Sample_02_0027 Umbilical vein HUVEC_VEGF_4h 738 5 655 64 1 70 1539 SLC43A3,RTN4RL2,PRG2,PRG3
SE_02_083100637 chr11:57405261-57427596 Sample_02_0831 Umblical vein HUVECs_TNF0min 637 8 636 61 1 64 1498 SLC43A3,PRG2,RTN4RL2,PRG3,RP11-872D17.8
SE_02_095001305 chr11:57405337-57427670 Sample_02_0950 Umbilical vein HUVEC_WT 1305 8 637 61 1 61 1511 SLC43A3,PRG2,RTN4RL2,PRG3,RP11-872D17.8
SE_01_002400690 chr11:57405381-57435642 Sample_01_0024 Blood CD14-positive-monocyte 690 6 831 82 2 110 1539 SLC43A3,RTN4RL2,PRG2,PRG3
SE_02_058500650 chr11:57405423-57427598 Sample_02_0585 Umbilical vein HUVEC 0hour 650 9 633 61 1 61 1498 SLC43A3,PRG2,RTN4RL2,PRG3,RP11-872D17.8
SE_02_090801421 chr11:57405449-57428469 Sample_02_0908 Heart left ventricle_DCM_LV1262 1421 9 655 66 1 66 1539 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_076201054 chr11:57405452-57436417 Sample_02_0762 Podocyte podocyte_CTL 1054 11 858 83 2 110 1539 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_083200394 chr11:57405456-57427680 Sample_02_0832 Umblical vein HUVECs_TNF30min 394 6 633 61 1 61 1514 SLC43A3,PRG2,RTN4RL2,PRG3,RP11-872D17.8
SE_02_046000584 chr11:57405498-57434788 Sample_02_0460 Blood ME-1_I-10-49_6h 584 16 810 79 1 110 1539 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_045900701 chr11:57405547-57434347 Sample_02_0459 Blood ME-1_DMSO_6h 701 10 800 77 1 104 1539 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_149201012 chr11:57405611-57459058 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 1012 11 1440 126 5 184 1609 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_151900711 chr11:57405640-57426363 Sample_02_1519 Umbilical vein HUVEC_Scr_IL1beta 711 13 584 57 1 59 1246 SLC43A3,PRG2,RTN4RL2,PRG3,RP11-872D17.8
SE_02_152000756 chr11:57405652-57426358 Sample_02_1520 Umbilical vein HUVEC_Notch1kd_IL1beta 756 10 583 57 1 59 1246 SLC43A3,PRG2,RTN4RL2,PRG3,RP11-872D17.8
SE_01_007500789 chr11:57405685-57435694 Sample_01_0075 Esophagus squamous epithelium esophagus-squamous-epithelium 789 5 823 82 2 109 1539 SLC43A3,RTN4RL2,PRG2,PRG3
SE_02_048101996 chr11:57405889-57445232 Sample_02_0481 Mammary gland MDA-MB231 1996 14 1097 110 5 110 1539 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_158000653 chr11:57406006-57435586 Sample_02_1580 Renal 786-O 653 11 818 81 2 106 1539 SLC43A3,PRG2,RTN4RL2,PRG3
SE_01_007200701 chr11:57406313-57435717 Sample_01_0072 Breast epithelium breast-epithelium 701 5 808 77 2 106 1539 SLC43A3,RTN4RL2,PRG2,PRG3
SE_02_158400275 chr11:57406314-57435478 Sample_02_1584 Brain U87 GBM_Mock 275 12 801 76 1 106 1539 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_061300521 chr11:57406316-57433448 Sample_02_0613 Liposarcoma MLPS_T1 521 10 759 72 1 80 1539 SLC43A3,PRG2,RTN4RL2,PRG3
SE_01_008700449 chr11:57406521-57443949 Sample_01_0087 Thyroid gland thyroid-gland 449 5 1039 101 4 109 1539 SLC43A3,RTN4RL2,PRG2,PRG3
SE_02_046600587 chr11:57406730-57458708 Sample_02_0466 Adipose visceral adipocytes 587 20 1404 121 5 177 1609 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_155200883 chr11:57406925-57436334 Sample_02_1552 HMSCs hMSC ATCC SCRC-4000 883 13 814 77 2 104 1507 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_142800955 chr11:57406975-57435916 Sample_02_1428 Shoulder fibroblast_316 955 8 798 77 2 103 1504 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_142600637 chr11:57416315-57436199 Sample_02_1426 Shoulder fibroblast_341 637 8 542 43 1 79 833 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_131000942 chr11:57416473-57435693 Sample_02_1310 Bone marrow ASMSCs 942 4 517 42 1 79 810 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_131100917 chr11:57416645-57435615 Sample_02_1311 Bone marrow HDMSCs 917 5 509 42 1 79 778 SLC43A3,PRG2,RTN4RL2,PRG3
SE_01_010500415 chr11:57416707-57443464 Sample_01_0105 Thyroid gland thyroid gland_54y 415 10 726 65 3 83 766 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_092600178 chr11:57417285-57433533 Sample_02_0926 Blood NB4_1 178 11 453 35 0 53 745 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_001600431 chr11:57418776-57428498 Sample_02_0016 Blood erythroblasts 431 1 275 20 0 29 674 SLC43A3,RTN4RL2,PRG2,PRG3
SE_02_123900184 chr11:57419402-57437308 Sample_02_1239 Skin Waga_virus_positive 184 5 474 40 1 75 674 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_103501520 chr11:57419516-57441592 Sample_02_1035 Mammary gland HCC70_Vehicle 1520 6 591 54 3 77 674 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_103601563 chr11:57419553-57442761 Sample_02_1036 Mammary gland HCC70_XY018 1563 8 625 58 3 77 674 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_101800373 chr11:57419573-57445035 Sample_02_1018 Erythroblast CD34+ Hematopoietic stem/progenitor cells_12 days 373 6 690 62 4 77 674 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_142500467 chr11:57419635-57435270 Sample_02_1425 Shoulder fibroblast_384 467 5 409 33 0 73 674 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_061500679 chr11:57419871-57433426 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 679 5 368 30 0 47 674 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_142300496 chr11:57419905-57432797 Sample_02_1423 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_1h 496 3 352 29 0 45 674 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_134200129 chr11:57420340-57433870 Sample_02_1342 Blood NB4 129 5 372 30 0 60 674 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_109900462 chr11:57421409-57434018 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 462 7 338 30 0 56 573 SLC43A3,PRG2,RTN4RL2,PRG3,SLC43A1,SSRP1,UBE2L6,TIMM10,TNKS1BP1
SE_02_057601103 chr11:57421629-57434725 Sample_02_0576 Blood HEL_sgLKB1e2 1103 8 345 31 0 67 541 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_057900956 chr11:57421723-57434053 Sample_02_0579 Blood HEL_sgNeg2 956 8 331 30 0 56 541 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_058001068 chr11:57421791-57434794 Sample_02_0580 Blood HEL_sgSIK3e4 1068 5 343 32 0 67 541 SLC43A3,PRG2,RTN4RL2,PRG3
SE_04_000100915 chr11:57422940-57433999 Sample_04_0001 Blood heat shocked K562 915 3 304 29 0 55 541 SLC43A3,PRG2,RTN4RL2,PRG3,SLC43A1,SSRP1,UBE2L6,TIMM10,TNKS1BP1
SE_02_116801042 chr11:57423467-57435370 Sample_02_1168 Biliary H69_TGF Vehicle_2 1042 6 315 29 0 66 541 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_116700990 chr11:57423536-57435332 Sample_02_1167 Biliary H69_TGF Vehicle_1 990 5 313 29 0 66 541 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_153300246 chr11:57423547-57441514 Sample_02_1533 Lung purified primary alveolar epithelial type 2 cells 246 4 486 49 3 70 541 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_125800738 chr11:57423573-57447245 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 738 8 653 65 4 71 541 SLC43A3,PRG2,RTN4RL2,PRG3
SE_00_000600685 chr11:57423588-57428332 Sample_00_0006 Blood CD14-positive-monocyte 685 1 141 12 0 22 541 SLC43A3,RTN4RL2,PRG2,PRG3
SE_02_008500264 chr11:57423598-57446778 Sample_02_0085 Oral cavity KB_IL-1alpha_5Z-7-oxozeaenol 264 4 638 64 4 71 541 SLC43A3,RTN4RL2,PRG2,PRG3
SE_02_035900213 chr11:57423603-57433930 Sample_02_0359 Colon Colo741 213 2 284 25 0 55 541 SLC43A3,RTN4RL2,PRG2,PRG3
SE_02_032700303 chr11:57423652-57459910 Sample_02_0327 Liver hepatocytes_d6 303 5 954 76 4 144 611 SLC43A3,RTN4RL2,PRG2,PRG3
SE_02_054501012 chr11:57423727-57433996 Sample_02_0545 Bone marrow K562 WT 1012 3 283 25 0 55 541 SLC43A3,PRG2,RTN4RL2,PRG3,SLC43A1,SSRP1,UBE2L6,TIMM10,TNKS1BP1
SE_02_018400310 chr11:57423743-57434152 Sample_02_0184 Skin SKMEL30 310 2 283 25 0 60 541 SLC43A3,RTN4RL2,PRG2,PRG3
SE_02_032500344 chr11:57423794-57460023 Sample_02_0325 Liver hepatocytes_d1 344 7 951 76 4 145 610 SLC43A3,RTN4RL2,PRG2,PRG3
SE_02_132100922 chr11:57423802-57433478 Sample_02_1321 Connective Tissue HT1080_FUS-DDIT3 922 4 267 25 0 40 540 SLC43A3,PRG2,RTN4RL2,PRG3,SERPING1,SLC43A1,SSRP1,ZDHHC5,TMX2,TNKS1BP1,C11orf31,UBE2L6
SE_02_074101005 chr11:57423806-57432888 Sample_02_0741 Muscle RH30 1005 3 254 24 0 38 540 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_102800416 chr11:57423863-57432847 Sample_02_1028 Blood HL-60_WT 416 3 252 24 0 38 536 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_018500680 chr11:57423880-57433980 Sample_02_0185 Skin UACC257 680 2 280 25 0 55 534 SLC43A3,RTN4RL2,PRG2,PRG3
SE_02_081601779 chr11:57423882-57434719 Sample_02_0816 Ovary Clear cell ovarian cancer 1779 4 292 26 0 66 534 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_015800603 chr11:57423893-57435340 Sample_02_0158 Brain U87_EGFRvIII_erlotinib 603 3 306 29 0 66 534 SLC43A3,RTN4RL2,PRG2,PRG3
SE_02_135101081 chr11:57423906-57433575 Sample_02_1351 Mammary gland MDA-MB-231-Erbeta_vehicle 1081 2 272 25 0 40 533 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_132201345 chr11:57423910-57432912 Sample_02_1322 Connective Tissue HT1080_WT 1345 2 255 24 0 39 531 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_018100637 chr11:57423930-57434066 Sample_02_0181 melanoma COLO679 637 2 280 25 0 60 525 SLC43A3,RTN4RL2,PRG2,PRG3
SE_02_126900906 chr11:57424049-57428409 Sample_02_1269 Bone Im-GCT-4072_G34W-repair_WT_A4 906 1 133 13 0 21 506 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_122800980 chr11:57424050-57432777 Sample_02_1228 Mammary gland MDA-MB-231_2 980 2 245 24 0 37 506 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_032600630 chr11:57424053-57459916 Sample_02_0326 Liver hepatocytes_d3 630 7 946 76 4 143 576 SLC43A3,RTN4RL2,PRG2,PRG3
SE_02_135300989 chr11:57424165-57432751 Sample_02_1353 Mammary gland MDA-MB-231-Erbeta_TNFa 989 2 243 24 0 37 489 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_151200246 chr11:57424174-57441484 Sample_02_1512 Lung Purified AT2 cells 246 3 472 49 3 69 486 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_092900583 chr11:57424325-57458436 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 583 19 902 73 4 108 549 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_098800969 chr11:57424330-57434340 Sample_02_0988 Blood K562_EPZ 969 4 272 24 0 58 479 SLC43A3,PRG2,RTN4RL2,PRG3,SLC43A1,SSRP1,UBE2L6,TIMM10,TNKS1BP1
SE_02_153600664 chr11:57424351-57433190 Sample_02_1536 Mammary gland MDA-MB-231_ER?_L540Q_0min 664 3 247 24 0 37 479 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_123700241 chr11:57424382-57438813 Sample_02_1237 Skin MKL2_virus_positive 241 4 399 38 1 68 479 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_126801048 chr11:57424444-57428297 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 1048 1 117 11 0 19 479 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_006800687 chr11:57424580-57433044 Sample_02_0068 Skin A375_DMSO 687 3 241 24 0 35 479 SLC43A3,RTN4RL2,PRG2,PRG3
SE_02_072500551 chr11:57424746-57435250 Sample_02_0725 Mammary gland MCF10A-YAP5SA_ctrl 551 2 276 27 0 62 479 SLC43A3,PRG2,RTN4RL2,PRG3
SE_02_058900597 chr11:57433762-57457416 Sample_02_0589 Cervix HeLa Kyoto_Luci siRNA 597 15 623 49 4 41 70 RTN4RL2,SLC43A3,PRG2
SE_02_059000719 chr11:57434215-57458473 Sample_02_0590 Cervix HeLa Kyoto_Luci PWWP2A siRNA 719 9 634 49 4 62 70 RTN4RL2,SLC43A3,PRG2
SE_02_028600180 chr11:57481835-57505554 Sample_02_0286 Liver HuH7_IL-1alpha_1h 180 4 540 38 1 123 1156 SLC43A1,RTN4RL2,SMTNL1,TIMM10
SE_02_037600235 chr11:57485184-57491358 Sample_02_0376 Skeletal muscle RMS237 235 3 128 8 1 23 353 SLC43A1,RTN4RL2,TIMM10
SE_02_055500292 chr11:57492731-57527318 Sample_02_0555 Other HAP1_WT 292 8 826 70 0 131 903 SLC43A1,SMTNL1,RTN4RL2,UBE2L6,TIMM10
SE_02_076400415 chr11:57492856-57513458 Sample_02_0764 Prostate LNCaP_DHT_DMSO_6h 415 8 509 41 0 70 481 SLC43A1,RTN4RL2,SMTNL1,TIMM10
SE_02_016200074 chr11:57493006-57508672 Sample_02_0162 Prostate C4-2B_vehicle_24h 74 7 374 30 0 59 481 SLC43A1,RTN4RL2,SMTNL1,TIMM10
SE_02_136300522 chr11:57493148-57516082 Sample_02_1363 Blood Hudep2 522 5 564 48 0 126 903 SLC43A1,RTN4RL2,SMTNL1,TIMM10
SE_02_067300654 chr11:57493306-57508236 Sample_02_0673 Prostate LNCAP_FA 654 6 360 29 0 58 481 SLC43A1,RTN4RL2,SMTNL1,TIMM10
SE_02_016300479 chr11:57493409-57501598 Sample_02_0163 Prostate C4-2B_SR2211_24h 479 3 200 15 0 52 481 SLC43A1,RTN4RL2,SMTNL1,TIMM10
SE_01_007100525 chr11:57493451-57503207 Sample_01_0071 Pancreas body-of-pancreas 525 3 228 18 0 52 481 SLC43A1,RTN4RL2,SMTNL1,TIMM10
SE_02_028500055 chr11:57495048-57516548 Sample_02_0285 Liver HuH7_untreat 55 2 525 49 0 118 803 SLC43A1,RTN4RL2,SMTNL1,TIMM10
SE_00_003000387 chr11:57497486-57502608 Sample_00_0030 Pancreas pancreas 387 6 113 8 0 34 290 SLC43A1,RTN4RL2,SMTNL1,TIMM10
SE_02_147600744 chr11:57499013-57516187 Sample_02_1476 Bone EW-1 744 7 432 39 0 99 626 SLC43A1,RTN4RL2,SMTNL1,TIMM10
SE_02_106500441 chr11:57508874-57516122 Sample_02_1065 Lymphoma KARPAS-422_DMSO_8d 441 3 192 17 0 67 422 SLC43A1,RTN4RL2,SMTNL1,TIMM10
Genomic distribution of SEs associated with RTN4RL2
Genome Browser

The strength of the tissue affected by the gene

Expression of RTN4RL2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)