SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000108344
Gene: PSMD3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr17:39980807-39997959 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_00_002001521 chr17:39904207-39940406 Sample_00_0020 Large intestine large-intestine_108d 1521 5 942 144 34 79 2356 GSDMB,ORMDL3,PSMD3,ZPBP2,IKZF3,GSDMA,LOC728129
SE_00_001400525 chr17:39904456-39935231 Sample_00_0014 Heart left ventricle heart-left-ventricle 525 4 824 125 31 74 2346 GSDMB,ORMDL3,PSMD3,ZPBP2,IKZF3,GSDMA,LOC728129
SE_02_082600621 chr17:39913878-39933575 Sample_02_0826 Stomach gastric tumor 621 10 508 69 14 70 1500 ORMDL3,GSDMB,LRRC3C,GSDMA,ZPBP2,PSMD3,IKZF3
SE_00_003600795 chr17:39916520-39940416 Sample_00_0036 Small intestine small-intestine_108days 795 4 621 82 16 77 1500 GSDMB,ORMDL3,PSMD3,ZPBP2,GSDMA,LOC728129
SE_02_013200863 chr17:39919014-39940713 Sample_02_0132 Lung 1015_CL 863 2 551 73 12 76 1291 ORMDL3,GSDMB,PSMD3,GSDMA,LOC728129
SE_02_013100750 chr17:39919840-39940754 Sample_02_0131 Lung 1015_PT 750 2 522 70 11 76 1291 ORMDL3,GSDMB,PSMD3,GSDMA,LOC728129
SE_02_122100074 chr17:39920018-39959572 Sample_02_1221 Bone marrow KMS11 74 7 1066 166 28 126 1632 ORMDL3,LRRC3C,GSDMB,PSMD3,GSDMA
SE_02_036200584 chr17:39920192-39953989 Sample_02_0362 Haematopoietic and lymphoid tissue REH 584 5 891 126 18 124 1632 LOC728129,ORMDL3,GSDMB,PSMD3,GSDMA
SE_02_045700765 chr17:39920654-39940185 Sample_02_0457 Th17 lymphocytes Th17-IL-10- Day 5 765 4 496 64 11 75 1291 ORMDL3,LRRC3C,GSDMB,PSMD3,GSDMA
SE_02_074700675 chr17:39920792-39934661 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 675 6 357 45 8 71 1291 ORMDL3,LRRC3C,GSDMB,PSMD3,GSDMA
SE_02_021100553 chr17:39923616-39951710 Sample_02_0211 Lung MRC-5_NFD_1DPT 553 5 745 103 16 99 1071 LOC728129,ORMDL3,GSDMB,PSMD3,GSDMA
SE_02_146500141 chr17:39923660-39960833 Sample_02_1465 Ovary CAOV4cis 141 13 1001 161 28 103 1071 ORMDL3,LRRC3C,GSDMB,PSMD3,GSDMA,GRB7,CASC3,CSF3
SE_02_049401136 chr17:39923722-39934393 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 1136 2 265 35 8 47 730 ORMDL3,LRRC3C,GSDMB,PSMD3,GSDMA
SE_02_137701143 chr17:39923848-39959385 Sample_02_1377 Pancreas Pancreatic_tumor_associated_fibroblasts_BF1_untreated 1143 6 955 157 28 102 1064 ORMDL3,LRRC3C,GSDMB,PSMD3,GSDMA
SE_02_156001039 chr17:39923918-39959585 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 1039 6 963 157 28 100 1052 ORMDL3,LRRC3C,GSDMB,PSMD3,GSDMA
SE_01_004200176 chr17:39924555-39941475 Sample_01_0042 Haematopoietic and lymphoid tissue KMS-11 176 2 422 67 11 47 639 LOC728129,ORMDL3,GSDMB,PSMD3,GSDMA
SE_02_040400479 chr17:39924903-39959685 Sample_02_0404 Mammary gland ZR-75-1_2 479 7 947 154 26 96 891 LOC728129,ORMDL3,GSDMB,PSMD3,GSDMA
SE_02_090401339 chr17:39926186-39935441 Sample_02_0904 Heart left ventricle_DCM_LV1028 1339 2 243 32 7 38 309 ORMDL3,LRRC3C,GSDMB,PSMD3,GSDMA
SE_02_093800365 chr17:39926438-39940836 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 365 2 357 52 9 42 277 ORMDL3,LRRC3C,GSDMB,PSMD3,GSDMA
SE_02_146400273 chr17:39926448-39958727 Sample_02_1464 Ovary CAOV4 273 9 875 148 26 91 615 ORMDL3,LRRC3C,GSDMB,PSMD3,GSDMA,GRB7,CASC3,CSF3
SE_01_001900791 chr17:39926691-39940962 Sample_01_0019 Brain and spinal cord astrocyte 791 2 355 52 8 37 231 ORMDL3,GSDMB,PSMD3,GSDMA,LOC728129
SE_01_002900700 chr17:39926714-39940603 Sample_01_0029 Lung fibroblast-of-lung 700 2 345 46 8 37 226 ORMDL3,GSDMB,PSMD3,GSDMA,LOC728129
SE_02_093600417 chr17:39926714-39940847 Sample_02_0936 Retinal Pigmented Epithelial RPE188_TnT 417 2 349 49 8 37 226 ORMDL3,LRRC3C,GSDMB,PSMD3,GSDMA
SE_02_151300895 chr17:39927652-39931269 Sample_02_1513 Lung Transitional AT2->1 cells 895 1 81 16 3 17 33 LRRC3C,GSDMB,PSMD3,GSDMA,ORMDL3,GRB7,CSF3
SE_02_047401202 chr17:39927736-39940864 Sample_02_0474 Fibroblast umbilical cord Fibroblast 1202 2 324 47 8 26 10 LRRC3C,GSDMB,PSMD3,GSDMA,ORMDL3
SE_02_098800819 chr17:39929499-39972854 Sample_02_0988 Blood K562_EPZ 819 8 1208 204 26 107 973 GSDMA,LRRC3C,CSF3,GSDMB,PSMD3,ORMDL3
SE_02_074901005 chr17:39943380-39959692 Sample_02_0749 Mammary gland HCC1599_GSI 1005 5 483 86 16 43 275 LRRC3C,GSDMB,PSMD3,GSDMA,ORMDL3
SE_02_104701856 chr17:39944093-39966613 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 1856 10 672 120 19 54 543 GSDMA,LRRC3C,CSF3,GSDMB,PSMD3,ORMDL3
SE_02_005300173 chr17:40012600-40027824 Sample_02_0053 Colon DKO1 173 2 510 63 3 139 1806 SNORD124,MED24,CSF3,PSMD3,GSDMA,THRA
SE_02_153200030 chr17:40013148-40027838 Sample_02_1532 Mammary gland MCF10A 30 1 485 56 3 139 1814 MED24,SNORD124,MIR6884,CSF3,THRA,PSMD3
SE_02_076900288 chr17:40013194-40024977 Sample_02_0769 Ovary HEYA8 288 5 408 47 2 105 1449 MED24,CSF3,THRA,MIR6884,SNORD124,PSMD3,RAPGEFL1,GSDMB,NR1D1,WIPF2
SE_02_010700176 chr17:40013267-40028142 Sample_02_0107 Endometrium EEC16 176 1 491 56 3 140 1854 SNORD124,MED24,CSF3,PSMD3,THRA
SE_02_040000088 chr17:40013298-40028043 Sample_02_0400 Mammary gland SUM159PT-MCF-7 88 1 481 56 3 140 1851 SNORD124,MED24,CSF3,PSMD3,THRA
SE_02_036800232 chr17:40013339-40039862 Sample_02_0368 Skeletal muscle NS134 232 4 827 85 4 233 2854 SNORD124,MED24,CSF3,PSMD3,THRA
SE_01_007600632 chr17:40013348-40040140 Sample_01_0076 Gastrocnemius medialis gastrocnemius-medialis 632 4 840 86 4 233 2854 SNORD124,MED24,CSF3,PSMD3,THRA
SE_02_036700222 chr17:40013396-40039868 Sample_02_0367 Skeletal muscle NS129 222 3 827 85 4 233 2854 SNORD124,MED24,CSF3,PSMD3,THRA
SE_02_011001209 chr17:40013404-40027771 Sample_02_0110 Ovaries IOE11 1209 1 470 56 3 139 1799 SNORD124,MED24,CSF3,PSMD3,THRA
SE_02_028000571 chr17:40013542-40027926 Sample_02_0280 Mammary gland SUM159_DMSO_24h 571 1 465 55 3 139 1838 SNORD124,MED24,CSF3,PSMD3,THRA
SE_00_003200514 chr17:40013543-40020905 Sample_00_0032 Psoas muscle psoas-muscle_30y 514 1 244 30 0 71 1040 MED24,CSF3,SNORD124,PSMD3,THRA
SE_01_009200701 chr17:40013585-40039791 Sample_01_0092 Vagina vagina 701 4 811 83 4 233 2854 SNORD124,MED24,CSF3,PSMD3,THRA
SE_02_018200025 chr17:40013671-40027866 Sample_02_0182 melanoma LOX-IMVI 25 1 461 55 3 139 1821 SNORD124,MED24,CSF3,PSMD3,THRA
SE_02_039900146 chr17:40013720-40028234 Sample_02_0399 Mammary gland SUM159PT-BT-474 146 1 477 55 3 140 1854 SNORD124,MED24,CSF3,PSMD3,THRA
SE_02_027400641 chr17:40013790-40027396 Sample_02_0274 Endometriosis hTERT_KD 641 3 445 53 3 132 1717 MED24,CSF3,SNORD124,PSMD3,THRA
SE_02_015100517 chr17:40013871-40027553 Sample_02_0151 Mammary gland MDA-MB-231_TA1del 517 1 443 53 3 138 1758 SNORD124,MED24,CSF3,PSMD3,THRA
SE_02_146900421 chr17:40013879-40025485 Sample_02_1469 Umbilical Vein HUVEC 421 1 395 46 2 105 1449 MED24,CSF3,THRA,MIR6884,SNORD124,PSMD3,GSDMB
SE_02_158400064 chr17:40013914-40027549 Sample_02_1584 Brain U87 GBM_Mock 64 1 442 53 3 138 1757 MED24,SNORD124,MIR6884,CSF3,THRA,PSMD3
SE_02_095000203 chr17:40013921-40027585 Sample_02_0950 Umbilical vein HUVEC_WT 203 1 443 53 3 137 1763 MED24,SNORD124,MIR6884,CSF3,THRA,PSMD3,GSDMB
SE_02_147100292 chr17:40013925-40026990 Sample_02_1471 Blood Outgrowth Endothelia BOEC 292 1 426 52 3 128 1616 MED24,MIR6884,CSF3,THRA,SNORD124,PSMD3
SE_02_099100304 chr17:40013929-40021467 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 304 1 254 32 0 70 1040 MED24,CSF3,THRA,MIR6884,SNORD124,PSMD3
SE_02_141800041 chr17:40013930-40027125 Sample_02_1418 Brain SF9427 41 1 430 52 3 129 1649 MED24,MIR6884,CSF3,THRA,SNORD124,PSMD3
SE_02_040100280 chr17:40013930-40039695 Sample_02_0401 Mammary gland SUM159PT-T47D 280 3 795 82 4 232 2854 SNORD124,MED24,CSF3,PSMD3,THRA
SE_02_153700057 chr17:40013949-40027705 Sample_02_1537 Mammary gland MDA-MB-231_ER?_L540Q_45min 57 1 445 53 3 138 1790 MED24,SNORD124,MIR6884,CSF3,THRA,PSMD3
SE_02_059600185 chr17:40013950-40024097 Sample_02_0596 Mammary gland MCF10A_ DMSO 185 1 346 40 2 104 1449 MED24,CSF3,THRA,MIR6884,SNORD124,PSMD3
SE_02_079800053 chr17:40013970-40021511 Sample_02_0798 Brain 1919 53 1 256 32 0 70 1040 MED24,CSF3,THRA,MIR6884,SNORD124,PSMD3
SE_02_060300154 chr17:40013973-40024192 Sample_02_0603 Mammary gland MCF10A_p63shRNA_Nutlin3A 154 2 351 41 2 104 1449 MED24,CSF3,THRA,MIR6884,SNORD124,PSMD3
SE_02_076300668 chr17:40013986-40027181 Sample_02_0763 Podocyte podocyte_DEX 668 1 430 52 3 129 1664 MED24,MIR6884,CSF3,THRA,SNORD124,PSMD3
SE_02_153500055 chr17:40014000-40024961 Sample_02_1535 Mammary gland MDA-MB-231_ER?WT_45min 55 4 377 45 2 104 1449 MED24,CSF3,THRA,MIR6884,SNORD124,PSMD3
SE_02_125400693 chr17:40014003-40022888 Sample_02_1254 Bladder Bladder tumor Basal1 693 2 308 35 1 82 1279 MED24,CSF3,THRA,MIR6884,SNORD124,PSMD3
SE_02_059700132 chr17:40014004-40023987 Sample_02_0597 Mammary gland MCF10A_Nutlin3A 132 4 343 40 2 104 1449 MED24,CSF3,THRA,MIR6884,SNORD124,PSMD3
SE_00_003300540 chr17:40014005-40032929 Sample_00_0033 Psoas muscle psoas-muscle_3y 540 3 605 67 4 163 2347 SNORD124,MED24,CSF3,PSMD3,THRA
SE_02_116800533 chr17:40014006-40027112 Sample_02_1168 Biliary H69_TGF Vehicle_2 533 1 429 52 3 129 1647 MED24,MIR6884,CSF3,THRA,SNORD124,PSMD3
SE_02_060200257 chr17:40014023-40024267 Sample_02_0602 Mammary gland MCF10A_p63shRNA_DMSO 257 2 355 41 2 104 1449 MED24,CSF3,THRA,MIR6884,SNORD124,PSMD3
SE_02_116700521 chr17:40014024-40027110 Sample_02_1167 Biliary H69_TGF Vehicle_1 521 1 429 52 3 129 1647 MED24,MIR6884,CSF3,THRA,SNORD124,PSMD3
SE_02_048000455 chr17:40014057-40023931 Sample_02_0480 Gingival epithelial HGEP 455 4 339 40 2 104 1449 MED24,CSF3,THRA,MIR6884,SNORD124,PSMD3,GSDMB,ORMDL3,GSDMA
SE_02_053000871 chr17:40014073-40024438 Sample_02_0530 Mammary gland MCF10A 871 1 361 41 2 104 1449 MED24,CSF3,THRA,MIR6884,SNORD124,PSMD3
SE_02_015500013 chr17:40014235-40023128 Sample_02_0155 Brain U87_EGFRvIII_shSOX9_FBS 13 2 313 38 1 82 1344 MED24,CSF3,SNORD124,PSMD3,THRA
SE_02_015800078 chr17:40014244-40025543 Sample_02_0158 Brain U87_EGFRvIII_erlotinib 78 1 386 46 2 104 1449 MED24,CSF3,SNORD124,PSMD3,THRA
SE_00_002201132 chr17:40014249-40024356 Sample_00_0022 Lung lung_30y 1132 2 352 41 2 104 1449 MED24,CSF3,SNORD124,PSMD3,THRA
SE_02_039601943 chr17:40014259-40033875 Sample_02_0396 Skin NHEK-D 1943 3 632 69 4 174 2552 SNORD124,MED24,CSF3,PSMD3,THRA
SE_02_016100032 chr17:40014649-40025688 Sample_02_0161 Brain U87 32 4 372 44 2 103 1449 MED24,CSF3,SNORD124,PSMD3,THRA
SE_02_086900877 chr17:40016469-40024495 Sample_02_0869 Fibroblast VH10_NO_UV 877 1 279 30 2 65 1120 MED24,CSF3,THRA,MIR6884,SNORD124,PSMD3
SE_02_058500859 chr17:40016829-40025547 Sample_02_0585 Umbilical vein HUVEC 0hour 859 3 297 32 2 60 1037 MED24,CSF3,THRA,MIR6884,SNORD124,PSMD3
SE_02_127100862 chr17:40017011-40026153 Sample_02_1271 Leiomyosarcoma SK-LMS-1_WT 862 4 300 34 3 56 1013 MED24,CSF3,THRA,MIR6884,SNORD124,PSMD3
SE_02_072600171 chr17:40017062-40024345 Sample_02_0726 Mammary gland MCF10A-YAP5SA_plusDOX 171 7 255 26 2 54 991 MED24,CSF3,THRA,MIR6884,SNORD124,PSMD3
SE_02_094900803 chr17:40017100-40024373 Sample_02_0949 Umbilical artery HUAEC_WT 803 3 254 26 2 54 986 MED24,CSF3,THRA,MIR6884,SNORD124,PSMD3
SE_02_072500162 chr17:40017111-40023875 Sample_02_0725 Mammary gland MCF10A-YAP5SA_ctrl 162 5 234 25 2 54 986 MED24,CSF3,THRA,MIR6884,SNORD124,PSMD3
SE_02_153400635 chr17:40017190-40024325 Sample_02_1534 Mammary gland MDA-MB-231_ER?WT_0min 635 3 251 26 2 54 970 MED24,CSF3,THRA,MIR6884,SNORD124,PSMD3
SE_02_153600444 chr17:40017246-40024171 Sample_02_1536 Mammary gland MDA-MB-231_ER?_L540Q_0min 444 3 243 26 2 54 953 MED24,CSF3,THRA,MIR6884,SNORD124,PSMD3
SE_02_151900190 chr17:40017276-40033176 Sample_02_1519 Umbilical vein HUVEC_Scr_IL1beta 190 4 505 52 4 120 1895 MED24,SNORD124,MIR6884,CSF3,THRA,PSMD3
SE_02_152000085 chr17:40017282-40024538 Sample_02_1520 Umbilical vein HUVEC_Notch1kd_IL1beta 85 6 254 26 2 54 944 MED24,CSF3,THRA,MIR6884,SNORD124,PSMD3
SE_02_151800561 chr17:40017335-40024502 Sample_02_1518 Umbilical vein HUVEC_Scr 561 4 250 26 2 50 936 MED24,CSF3,THRA,MIR6884,SNORD124,PSMD3
SE_02_083200338 chr17:40017352-40024729 Sample_02_0832 Umblical vein HUVECs_TNF30min 338 3 257 26 2 50 933 MED24,CSF3,THRA,MIR6884,SNORD124,PSMD3
SE_02_015200018 chr17:40017423-40022410 Sample_02_0152 Brain U87_EGFRvIII_shFOXG1_FBS 18 8 182 19 1 19 632 MED24,CSF3,SNORD124,PSMD3,THRA
SE_02_005600958 chr17:40017488-40032412 Sample_02_0056 Mammary gland HMEC 958 4 471 47 3 102 1705 SNORD124,MED24,CSF3,PSMD3,THRA
SE_02_083100681 chr17:40017507-40024442 Sample_02_0831 Umblical vein HUVECs_TNF0min 681 2 246 24 2 49 895 MED24,CSF3,THRA,MIR6884,SNORD124,PSMD3
SE_02_021601113 chr17:40017873-40032786 Sample_02_0216 Skin NHEK_scramble 1113 6 473 46 4 108 1686 SNORD124,MED24,PSMD3,THRA,CSF3
SE_02_015400021 chr17:40018195-40021367 Sample_02_0154 Brain U87_EGFRvIII_shSCR_FBS 21 3 114 12 0 15 382 MED24,SNORD124,PSMD3,THRA,CSF3
SE_02_079800187 chr17:40021667-40027994 Sample_02_0798 Brain 1919 187 1 190 21 3 66 805 MED24,SNORD124,MIR6884,CSF3,THRA,PSMD3
Genomic distribution of SEs associated with PSMD3
Genome Browser

The strength of the tissue affected by the gene

Expression of PSMD3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)