SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_060200257
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: MCF10A_p63shRNA_DMSO
Genomic region: chr17:40014023-40024267
Size: 10244
Super-enhancer rank 257
Number of SE elements: 2
ChIP density(Case|Control): 34692.3304|3337.4952
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: CSF3 ;
ROSE Overlap MED24 ; CSF3 ;
ROSE Proximal CSF3 ; THRA ; MIR6884 ; SNORD124 ; PSMD3 ;
ROSE Closest CSF3 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA MED24 ; THRA ; CSF3 ; PSMD3 ; ORMDL3 ; MIR6884 ; LRRC3C ; SNORD124 ; NR1D1 ; GSDMA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_060200257 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers