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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000101198
Gene: NKAIN4 Gene type: protein_coding
Strand: - External links:
Genomic region: chr20:63240784-63272694 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_000400038 chr20:63116246-63204764 Sample_02_0004 Mammary gland MCF-7_10Gygamma_7.5h 38 34 2964 252 1 278 631 MIR124-3,YTHDF1,FLJ16779,MIR3196,BIRC7,HAR1A,NKAIN4,HAR1B
SE_02_151000129 chr20:63186238-63234192 Sample_02_1510 Lung H3122_LR_Pano 129 17 1536 139 3 128 886 YTHDF1,ARFGAP1,MIR124-3,BIRC7,FLJ16779,NKAIN4,MIR3196
SE_02_056300263 chr20:63186287-63226360 Sample_02_0563 Mammary gland MCF7L-P_0h 263 15 1283 107 2 128 886 YTHDF1,ARFGAP1,MIR124-3,FLJ16779,MIR3196,NKAIN4,BIRC7
SE_02_056600206 chr20:63186371-63226422 Sample_02_0566 Mammary gland MCF7L-P_E2_24h 206 13 1280 108 2 128 886 YTHDF1,ARFGAP1,MIR124-3,FLJ16779,MIR3196,NKAIN4,BIRC7
SE_02_104301032 chr20:63196810-63232943 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1032 18 1157 100 3 111 755 YTHDF1,ARFGAP1,MIR124-3,FLJ16779,MIR3196,NKAIN4,BIRC7
SE_02_119100736 chr20:63197315-63230934 Sample_02_1191 Brain GBM25 736 7 1074 90 2 110 728 YTHDF1,ARFGAP1,MIR124-3,FLJ16779,MIR3196,NKAIN4,BIRC7
SE_02_104901809 chr20:63197544-63223462 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1809 18 820 64 1 109 728 YTHDF1,ARFGAP1,MIR124-3,FLJ16779,MIR3196,NKAIN4,BIRC7
SE_02_104601997 chr20:63204249-63234111 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1997 14 950 87 3 51 378 YTHDF1,ARFGAP1,MIR124-3,BIRC7,FLJ16779,MIR3196,NKAIN4
SE_02_119301314 chr20:63205916-63230980 Sample_02_1193 Brain GBM27 1314 5 788 70 2 50 378 YTHDF1,ARFGAP1,MIR124-3,FLJ16779,MIR3196,NKAIN4,BIRC7
SE_02_082600508 chr20:63207143-63233856 Sample_02_0826 Stomach gastric tumor 508 19 850 75 3 50 378 YTHDF1,ARFGAP1,MIR124-3,FLJ16779,MIR3196,NKAIN4,BIRC7
SE_02_136201182 chr20:63209699-63234175 Sample_02_1362 Bladder UMUC1_sonic_pSIN-puro H1146A/E1148A-mutant UTX 1182 7 777 70 3 48 303 YTHDF1,ARFGAP1,MIR124-3,BIRC7,FLJ16779,NKAIN4,MIR3196
SE_02_136100680 chr20:63209748-63234195 Sample_02_1361 Bladder UMUC1_sonic_pSIN-puro_WTUTX 680 7 778 70 3 48 303 YTHDF1,ARFGAP1,MIR124-3,BIRC7,FLJ16779,NKAIN4,MIR3196
SE_02_116900736 chr20:63211170-63234824 Sample_02_1169 Biliary H69_TGF beta_16h_2 736 9 770 73 3 48 303 YTHDF1,ARFGAP1,MIR124-3,BIRC7,FLJ16779,NKAIN4,MIR3196
SE_02_075300713 chr20:63211679-63217045 Sample_02_0753 Embryo ES-derived progenitors_FG type 713 3 141 9 0 40 303 YTHDF1,MIR124-3,BIRC7,FLJ16779,MIR3196,NKAIN4
SE_02_116600753 chr20:63212454-63233900 Sample_02_1166 Biliary H69_TGF beta_16h_1 753 7 703 62 3 48 303 YTHDF1,ARFGAP1,MIR124-3,FLJ16779,MIR3196,NKAIN4,BIRC7
SE_00_005300140 chr20:63213263-63235368 Sample_00_0053 Embryo trophoblast cell originated from H1 140 7 735 72 3 48 303 YTHDF1,ARFGAP1,MIR124-3,BIRC7,FLJ16779,NKAIN4,MIR3196
SE_02_139800150 chr20:63216428-63237356 Sample_02_1398 Bone U2OS_siNC 150 7 735 80 3 10 241 BIRC7,ARFGAP1,MIR124-3,MIR4326,FLJ16779,YTHDF1,NKAIN4,MIR3196
SE_02_139900187 chr20:63217776-63235269 Sample_02_1399 Bone U2OS_siMLL3.1 187 4 614 64 3 8 0 ARFGAP1,MIR124-3,BIRC7,FLJ16779,YTHDF1,NKAIN4,MIR3196
SE_02_007400392 chr20:63223289-63236159 Sample_02_0074 Other 90-8TL_PDJQ 392 3 434 54 2 3 110 BIRC7,FLJ16779,YTHDF1,MIR124-3,ARFGAP1,NKAIN4,MIR3196
SE_02_113400258 chr20:63223460-63234873 Sample_02_1134 Bone U2OS-interphase 258 3 381 47 2 1 0 ARFGAP1,MIR124-3,BIRC7,FLJ16779,YTHDF1,NKAIN4,MIR3196
SE_02_029500451 chr20:63223541-63237133 Sample_02_0295 Lung A549_TGFBeta_72h 451 3 474 61 2 2 241 BIRC7,FLJ16779,MIR3196,MIR124-3,ARFGAP1,NKAIN4,YTHDF1,MIR4326
SE_02_042800626 chr20:63223560-63234208 Sample_02_0428 Kidney 12364284_VHL- 626 3 355 40 2 0 0 FLJ16779,YTHDF1,MIR124-3,ARFGAP1,NKAIN4,BIRC7,MIR3196
SE_02_056100184 chr20:63223616-63236266 Sample_02_0561 Lung A549_1 184 4 431 54 2 2 140 BIRC7,ARFGAP1,MIR124-3,FLJ16779,YTHDF1,NKAIN4,MIR3196
SE_04_000400093 chr20:63223728-63235669 Sample_04_0004 Lung A549 TEAD2 shRNA TGFb 93 4 404 48 2 0 0 ARFGAP1,MIR124-3,BIRC7,FLJ16779,YTHDF1,NKAIN4,MIR3196
SE_02_018400258 chr20:63223747-63239542 Sample_02_0184 Skin SKMEL30 258 3 585 74 2 12 748 BIRC7,MIR3196,FLJ16779,MIR124-3,ARFGAP1,NKAIN4,YTHDF1,MIR4326
SE_02_154100464 chr20:63223762-63236637 Sample_02_1541 Nasopharyngeal HNE1 464 6 447 54 2 2 238 BIRC7,ARFGAP1,MIR124-3,FLJ16779,YTHDF1,NKAIN4,MIR3196
SE_04_000700201 chr20:63223783-63235721 Sample_04_0007 Lung A549 FOXA2 shRNA2 201 3 404 48 2 0 0 ARFGAP1,MIR124-3,BIRC7,FLJ16779,YTHDF1,NKAIN4,MIR3196
SE_02_001000673 chr20:63223795-63234199 Sample_02_0010 Kidney A-498_emptyvector 673 3 346 37 2 0 0 FLJ16779,YTHDF1,MIR124-3,ARFGAP1,NKAIN4,BIRC7,MIR3196
SE_04_000300053 chr20:63223796-63236514 Sample_04_0003 Lung A549 TEAD4 shRNA TGFb 53 3 439 52 2 2 207 BIRC7,ARFGAP1,MIR124-3,FLJ16779,YTHDF1,NKAIN4,MIR3196
SE_04_000800224 chr20:63223807-63235744 Sample_04_0008 Lung A549 shRNA control 224 4 403 49 2 0 0 ARFGAP1,MIR124-3,BIRC7,FLJ16779,YTHDF1,NKAIN4,MIR3196
SE_04_000500310 chr20:63223821-63236402 Sample_04_0005 Lung A549 FOXA2 overexpressed 310 4 430 51 2 2 176 BIRC7,ARFGAP1,MIR124-3,FLJ16779,YTHDF1,NKAIN4,MIR3196
SE_02_124100786 chr20:63223862-63233982 Sample_02_1241 Skin MCC26_virus_negative 786 3 335 36 2 0 0 ARFGAP1,YTHDF1,MIR124-3,FLJ16779,MIR3196,NKAIN4,BIRC7
SE_02_113600662 chr20:63223867-63234153 Sample_02_1136 Bone U2OS-anaphase/telophase 662 5 342 37 2 0 0 ARFGAP1,MIR124-3,BIRC7,FLJ16779,YTHDF1,NKAIN4,MIR3196
SE_04_000600205 chr20:63223871-63236714 Sample_04_0006 Lung A549 GFP control 205 3 447 56 2 2 241 BIRC7,ARFGAP1,MIR124-3,FLJ16779,YTHDF1,NKAIN4,MIR3196
SE_02_093001147 chr20:63224044-63234825 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 1147 7 361 44 2 0 0 ARFGAP1,MIR124-3,BIRC7,FLJ16779,YTHDF1,NKAIN4,MIR3196
SE_02_026800851 chr20:63224222-63234720 Sample_02_0268 Kidney A-498 851 3 347 43 2 0 0 FLJ16779,YTHDF1,MIR124-3,ARFGAP1,NKAIN4,BIRC7,MIR3196
SE_02_137200212 chr20:63224334-63237328 Sample_02_1372 Pancreas PSN1-untreated 212 4 455 59 2 2 241 BIRC7,ARFGAP1,MIR124-3,MIR4326,FLJ16779,YTHDF1,NKAIN4,MIR3196
SE_02_147000657 chr20:63224377-63235295 Sample_02_1470 Umbilical Vein H441 657 2 370 46 2 0 0 ARFGAP1,MIR124-3,BIRC7,FLJ16779,YTHDF1,NKAIN4,MIR3196
SE_02_020100125 chr20:63224890-63233995 Sample_02_0201 Stomach MKN7 125 2 295 34 2 0 0 FLJ16779,YTHDF1,MIR124-3,ARFGAP1,NKAIN4,BIRC7,MIR3196
SE_02_018600058 chr20:63225872-63234422 Sample_02_0186 Stomach AGS 58 4 284 40 2 0 0 FLJ16779,YTHDF1,MIR124-3,ARFGAP1,NKAIN4,BIRC7,MIR3196
SE_02_018500474 chr20:63230025-63239295 Sample_02_0185 Skin UACC257 474 1 369 55 1 9 683 BIRC7,MIR3196,FLJ16779,YTHDF1,ARFGAP1,NKAIN4,MIR4326
SE_02_153900613 chr20:63230521-63237852 Sample_02_1539 Nasopharyngeal C666-1 613 1 270 38 1 5 280 BIRC7,ARFGAP1,MIR4326,FLJ16779,YTHDF1,NKAIN4,MIR3196
SE_02_035900759 chr20:63230587-63239082 Sample_02_0359 Colon Colo741 759 1 334 48 1 9 620 BIRC7,MIR3196,FLJ16779,YTHDF1,ARFGAP1,NKAIN4,MIR4326
SE_02_016700447 chr20:63231020-63234586 Sample_02_0167 Mammary gland HCC1954_LCC2 447 1 122 20 1 0 0 FLJ16779,YTHDF1,ARFGAP1,NKAIN4,BIRC7,MIR3196
SE_02_103501158 chr20:63266557-63277237 Sample_02_1035 Mammary gland HCC70_Vehicle 1158 2 388 31 0 30 473 ARFGAP1,COL20A1,MIR4326,FLJ16779,MIR3196,NKAIN4,BIRC7
SE_02_103600858 chr20:63266575-63277245 Sample_02_1036 Mammary gland HCC70_XY018 858 2 388 31 0 31 475 ARFGAP1,COL20A1,MIR4326,FLJ16779,MIR3196,NKAIN4,BIRC7
SE_02_113600970 chr20:63271825-63275150 Sample_02_1136 Bone U2OS-anaphase/telophase 970 1 102 9 0 3 157 ARFGAP1,COL20A1,MIR4326,FLJ16779,MIR3196,NKAIN4,BIRC7
SE_02_036400317 chr20:63288971-63315484 Sample_02_0364 Skeletal muscle CTR 317 2 972 54 0 58 2533 ARFGAP1,COL20A1,FLJ16779,CHRNA4,NKAIN4,MIR4326
SE_02_104300911 chr20:63289862-63330298 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 911 12 1527 116 0 111 3984 COL20A1,ARFGAP1,LOC100130587,CHRNA4,MIR4326,FLJ16779,NKAIN4
SE_02_097100315 chr20:63289924-63320830 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 315 7 1143 71 0 81 2919 COL20A1,ARFGAP1,LOC100130587,CHRNA4,MIR4326,FLJ16779,NKAIN4
SE_02_138400267 chr20:63290223-63349528 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 267 18 2363 199 2 130 5010 CHRNA4,COL20A1,ARFGAP1,LOC100130587,MIR4326,FLJ16779,NKAIN4
SE_02_096200060 chr20:63290232-63326864 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 60 7 1370 93 0 98 3572 COL20A1,ARFGAP1,LOC100130587,CHRNA4,MIR4326,FLJ16779,NKAIN4
SE_02_119301343 chr20:63290319-63313310 Sample_02_1193 Brain GBM27 1343 6 835 40 0 48 1960 COL20A1,ARFGAP1,LOC100130587,CHRNA4,MIR4326,FLJ16779,NKAIN4
SE_02_121000243 chr20:63290539-63313141 Sample_02_1210 Brain GBM17 243 8 821 40 0 46 1910 COL20A1,ARFGAP1,LOC100130587,CHRNA4,MIR4326,FLJ16779,NKAIN4
SE_02_095800153 chr20:63290609-63310175 Sample_02_0958 Brain H3.3K27M_Tumor_BT245-X0-2-Rx_xenograft 153 2 676 30 0 26 1245 COL20A1,ARFGAP1,LOC100130587,MIR4326,FLJ16779,NKAIN4
SE_02_096900194 chr20:63290611-63320525 Sample_02_0969 Brain H3.3K27M_PL637 194 11 1105 68 0 81 2890 COL20A1,ARFGAP1,LOC100130587,CHRNA4,MIR4326,FLJ16779,NKAIN4
SE_02_121200037 chr20:63290814-63325904 Sample_02_1212 Brain GBM30 37 15 1306 90 0 90 3362 COL20A1,ARFGAP1,LOC100130587,CHRNA4,MIR4326,FLJ16779,NKAIN4
SE_02_114600019 chr20:63291010-63347344 Sample_02_1146 Peripheral nerve STS26T PRC2 WT 19 21 2236 190 1 126 4994 CHRNA4,COL20A1,ARFGAP1,LOC100130587,MIR4326,FLJ16779,NKAIN4
SE_02_117900159 chr20:63291834-63313564 Sample_02_1179 Brain GBM08 159 8 782 38 0 48 1988 COL20A1,ARFGAP1,LOC100130587,CHRNA4,MIR4326,FLJ16779,NKAIN4
SE_02_118800436 chr20:63291878-63313574 Sample_02_1188 Brain GBM18 436 5 781 38 0 48 1992 COL20A1,ARFGAP1,LOC100130587,CHRNA4,MIR4326,FLJ16779,NKAIN4
SE_02_118100663 chr20:63292239-63313490 Sample_02_1181 Brain GBM10 663 6 771 38 0 48 1988 COL20A1,ARFGAP1,LOC100130587,CHRNA4,MIR4326,FLJ16779,NKAIN4
SE_02_119000348 chr20:63292336-63313408 Sample_02_1190 Brain GBM24 348 7 764 38 0 48 1983 COL20A1,ARFGAP1,LOC100130587,CHRNA4,MIR4326,FLJ16779,NKAIN4
SE_02_085600557 chr20:63292379-63298282 Sample_02_0856 Glioblastoma Glioblastoma neurosphere cell_HF-3016 557 1 215 15 0 5 361 COL20A1,ARFGAP1,MIR4326,FLJ16779,NKAIN4
SE_02_121100801 chr20:63292443-63298421 Sample_02_1211 Brain GBM21 801 2 216 15 0 5 361 COL20A1,ARFGAP1,MIR4326,FLJ16779,NKAIN4
SE_02_094400085 chr20:63292494-63298227 Sample_02_0944 Brain TS576 85 1 210 14 0 5 361 COL20A1,ARFGAP1,MIR4326,FLJ16779,NKAIN4
SE_02_096000267 chr20:63292557-63298177 Sample_02_0960 Brain H3.3K27M_Tumor-derived cell-line_BT869p21-Rx_cells 267 2 203 14 0 5 348 COL20A1,ARFGAP1,MIR4326,FLJ16779,NKAIN4
SE_02_117600359 chr20:63292567-63313504 Sample_02_1176 Brain GBM04 359 6 759 37 0 48 1988 COL20A1,ARFGAP1,LOC100130587,CHRNA4,MIR4326,FLJ16779,NKAIN4
SE_02_118900289 chr20:63292574-63309600 Sample_02_1189 Brain GBM22 289 2 583 24 0 23 1106 COL20A1,ARFGAP1,MIR4326,FLJ16779,NKAIN4
SE_02_027500646 chr20:63292638-63331174 Sample_02_0275 Retina FW14 646 6 1469 114 0 111 4083 COL20A1,FLJ16779,ARFGAP1,CHRNA4,NKAIN4,MIR4326
SE_02_027700205 chr20:63294110-63379712 Sample_02_0277 Retina FW18 205 9 3352 311 8 264 6455 COL20A1,CHRNA4,FLJ16779,ARFGAP1,NKAIN4,MIR4326
SE_02_102900455 chr20:63294516-63371851 Sample_02_1029 Colon HCT116 455 46 3050 281 8 248 5944 CHRNA4,LOC100130587,COL20A1,ARFGAP1,MIR4326,FLJ16779,NKAIN4
SE_02_104601147 chr20:63294833-63342927 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1147 17 1916 164 0 111 3956 COL20A1,ARFGAP1,LOC100130587,CHRNA4,MIR4326,FLJ16779,NKAIN4
SE_02_000300048 chr20:63295014-63359470 Sample_02_0003 Mammary gland MCF-7_10Gygamma_5h 48 22 2583 229 5 207 5606 COL20A1,CHRNA4,FLJ16779,ARFGAP1,NKAIN4,MIR4326
SE_02_087400194 chr20:63295053-63330692 Sample_02_0874 Colon HCT116_siGLIS2.2-5FU 194 14 1364 109 0 110 3821 COL20A1,ARFGAP1,LOC100130587,CHRNA4,MIR4326,FLJ16779,NKAIN4
SE_02_021600688 chr20:63297189-63330038 Sample_02_0216 Skin NHEK_scramble 688 5 1253 97 0 107 3710 COL20A1,FLJ16779,ARFGAP1,CHRNA4,NKAIN4,MIR4326
SE_02_077500194 chr20:63304086-63387766 Sample_02_0775 Pancreas EndoC-BH1_SE 194 31 3373 316 8 265 6221 CHRNA4,LOC100130587,COL20A1,ARFGAP1,MIR4326,NKAIN4
Genomic distribution of SEs associated with NKAIN4
Genome Browser

The strength of the tissue affected by the gene

Expression of NKAIN4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)