SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_001000673
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr20:63223795-63234199
Size: 10404
Super-enhancer rank 673
Number of SE elements: 3
ChIP density(Case|Control): 41072.9112|1250.5608
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: BIRC7 ;
ROSE Overlap ;
ROSE Proximal FLJ16779 ; YTHDF1 ; MIR124-3 ; ARFGAP1 ; NKAIN4 ; BIRC7 ; MIR3196 ;
ROSE Closest BIRC7 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA COL20A1 ; MIR124-3 ; NKAIN4 ; YTHDF1 ; ARFGAP1 ; BIRC7 ; MIR3196 ; FLJ16779 ; MIR4326 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001000673 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers