SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000258102
Gene: MAP1LC3B2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr12:116548105-116576606 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_005700051 chr12:116332824-116557917 Sample_01_0057 Pancreas duct PANC-1 51 37 6618 230 16 139 623 NCRNA00173,MAP1LC3B2
SE_02_105300096 chr12:116420415-116535541 Sample_02_1053 Esophagus OACM5.1 96 53 3433 169 5 99 489 MIR4472-2,LINC00173,MAP1LC3B2
SE_02_104601638 chr12:116434169-116521762 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1638 25 2647 135 4 74 0 MAP1LC3B2,LINC00173,MIR4472-2
SE_02_035600083 chr12:116474582-116538837 Sample_02_0356 Colon Sw480 83 9 1892 139 2 72 566 NCRNA00173,MAP1LC3B2
SE_02_047900868 chr12:116480723-116557689 Sample_02_0479 Head and neck SCC25 868 29 2163 163 2 101 566 LINC00173,MAP1LC3B2
SE_02_087200049 chr12:116482145-116531437 Sample_02_0872 Colon HCT116_siCtrl-5FU 49 20 1470 107 1 37 0 MAP1LC3B2,LINC00173
SE_02_048000732 chr12:116488867-116540645 Sample_02_0480 Gingival epithelial HGEP 732 16 1501 115 1 67 566 LINC00173,MAP1LC3B2
SE_02_064501352 chr12:116489389-116540301 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1352 12 1477 111 1 67 566 LINC00173,MAP1LC3B2
SE_02_035200069 chr12:116491005-116532036 Sample_02_0352 Colon HCT116 69 3 1219 86 1 26 0 MAP1LC3B2,NCRNA00173
SE_02_042600048 chr12:116491225-116535347 Sample_02_0426 Colon HCT116_NONT 48 3 1304 92 1 50 402 NCRNA00173,MAP1LC3B2
SE_01_003400042 chr12:116491341-116540513 Sample_01_0034 Colon HCT116 42 6 1428 107 1 66 566 NCRNA00173,MAP1LC3B2
SE_02_042700083 chr12:116491362-116535485 Sample_02_0427 Colon HCT116_shPAF1 83 4 1303 92 1 50 422 NCRNA00173,MAP1LC3B2
SE_02_102900122 chr12:116491530-116554926 Sample_02_1029 Colon HCT116 122 28 1778 131 2 84 566 LINC00173,MAP1LC3B2
SE_02_035500167 chr12:116491922-116540683 Sample_02_0355 Colon HCT15 167 8 1414 106 1 55 566 NCRNA00173,MAP1LC3B2
SE_02_102600493 chr12:116492078-116528697 Sample_02_1026 Esophagus KYSE200 493 18 1092 76 1 15 0 MAP1LC3B2,LINC00173
SE_02_087300027 chr12:116492277-116541400 Sample_02_0873 Colon HCT116_siGLIS2.1-5FU 27 19 1420 107 1 57 566 LINC00173,MAP1LC3B2
SE_02_101701143 chr12:116492570-116557761 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1143 14 1816 134 2 79 566 LINC00173,MAP1LC3B2
SE_02_023700936 chr12:116492574-116540580 Sample_02_0237 Colon V389 936 12 1394 105 1 55 566 NCRNA00173,MAP1LC3B2
SE_01_011400082 chr12:116492650-116543073 Sample_01_0114 Colon HCT116_encode 82 14 1451 107 1 58 566 LINC00173,MAP1LC3B2
SE_02_045800052 chr12:116492674-116530453 Sample_02_0458 Colon HCT116 DMSO 52 17 1113 76 1 15 0 MAP1LC3B2,LINC00173
SE_02_143301225 chr12:116492674-116553421 Sample_02_1433 Bone A673 STAG2 null 1225 19 1716 124 2 79 566 LINC00173,MAP1LC3B2
SE_02_124700041 chr12:116492961-116530053 Sample_02_1247 Colon HCT116_IFN-beta_1h 41 9 1090 74 1 15 0 MAP1LC3B2,LINC00173
SE_02_087400079 chr12:116493125-116531374 Sample_02_0874 Colon HCT116_siGLIS2.2-5FU 79 16 1132 78 1 15 0 MAP1LC3B2,LINC00173
SE_02_059900081 chr12:116493129-116529957 Sample_02_0599 Colon HCT116_DMSO 81 15 1082 74 1 15 0 MAP1LC3B2,LINC00173
SE_02_035800362 chr12:116493992-116530408 Sample_02_0358 Colon LS180 362 4 1059 70 1 15 0 MAP1LC3B2,NCRNA00173
SE_02_052100100 chr12:116494335-116530072 Sample_02_0521 Colon SW480 100 6 1046 68 1 15 0 MAP1LC3B2,LINC00173
SE_02_102700448 chr12:116494351-116540157 Sample_02_1027 Esophagus KYSE180_1 448 20 1324 95 1 51 566 LINC00173,MAP1LC3B2
SE_02_014300229 chr12:116495253-116530391 Sample_02_0143 Colon HCT116_Parental 229 5 1034 66 1 15 0 MAP1LC3B2,NCRNA00173
SE_02_014100138 chr12:116495312-116530263 Sample_02_0141 Colon HCT116_Heterozygous_ARID1A-KO 138 6 1027 66 1 15 0 MAP1LC3B2,NCRNA00173
SE_02_005701185 chr12:116495726-116529035 Sample_02_0057 Mammary gland vHMEC 1185 4 988 62 1 15 0 MAP1LC3B2,NCRNA00173
SE_02_005600754 chr12:116495935-116528766 Sample_02_0056 Mammary gland HMEC 754 8 979 62 1 15 0 MAP1LC3B2,NCRNA00173
SE_02_107300763 chr12:116496510-116529269 Sample_02_1073 Keratinocyte keratinocytes stem cell 763 7 972 61 1 15 0 MAP1LC3B2,LINC00173
SE_02_061400940 chr12:116496911-116545804 Sample_02_0614 Liposarcoma MLPS_T2 940 14 1386 99 1 62 566 LINC00173,MAP1LC3B2
SE_02_112100918 chr12:116496912-116529106 Sample_02_1121 Neonatal foreskin keratinocytes_Mi2KD 918 11 951 61 1 15 0 MAP1LC3B2,LINC00173
SE_02_103100436 chr12:116499638-116543795 Sample_02_1031 Head and neck SCC1 contol 436 17 1254 91 1 58 566 LINC00173,MAP1LC3B2
SE_02_029400966 chr12:116516615-116543281 Sample_02_0294 Pancreatic L3-6_DMSO 966 5 742 59 1 50 566 NCRNA00173,MAP1LC3B2
SE_02_102500916 chr12:116516658-116542958 Sample_02_1025 Esophagus KYSE150 916 6 738 59 1 50 566 LINC00173,MAP1LC3B2
SE_02_130500320 chr12:116517263-116529860 Sample_02_1305 Pancreas Gemcitabine resistant L3.6pl 320 8 361 27 1 7 0 MAP1LC3B2,LINC00173
SE_02_113700705 chr12:116518093-116530544 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 705 5 360 28 1 7 0 MAP1LC3B2,LINC00173
SE_02_019700174 chr12:116518604-116529504 Sample_02_0197 Stomach SNU1750 174 3 313 25 1 5 0 MAP1LC3B2,NCRNA00173
SE_02_113801044 chr12:116519814-116530445 Sample_02_1138 Retinal Pigmented Epithelial RPE1-prometaphase 1044 3 299 22 1 2 0 MAP1LC3B2,LINC00173
SE_02_019400271 chr12:116519941-116541302 Sample_02_0194 Kidney Patient_x750T 271 5 593 51 1 44 566 NCRNA00173,MAP1LC3B2
SE_02_132001510 chr12:116520746-116552851 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 1510 10 853 68 2 66 566 LINC00173,MAP1LC3B2
SE_02_132201321 chr12:116521135-116552648 Sample_02_1322 Connective Tissue HT1080_WT 1321 7 842 65 1 66 566 LINC00173,MAP1LC3B2
SE_02_132100661 chr12:116521172-116552895 Sample_02_1321 Connective Tissue HT1080_FUS-DDIT3 661 9 844 66 1 66 566 LINC00173,MAP1LC3B2
SE_02_148900277 chr12:116521230-116553226 Sample_02_1489 Bone TC-106 277 9 859 66 1 66 566 LINC00173,MAP1LC3B2
SE_02_146500285 chr12:116521295-116544345 Sample_02_1465 Ovary CAOV4cis 285 8 630 51 0 44 566 LINC00173,MAP1LC3B2
SE_02_099100874 chr12:116521501-116528810 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 874 3 220 17 0 1 0 MAP1LC3B2,LINC00173
SE_02_146400365 chr12:116523885-116545326 Sample_02_1464 Ovary CAOV4 365 10 583 48 0 48 566 LINC00173,MAP1LC3B2
SE_01_005800783 chr12:116524118-116540775 Sample_01_0058 Prostate PC-3 783 2 465 41 0 41 566 NCRNA00173,MAP1LC3B2
SE_02_141500410 chr12:116524818-116557805 Sample_02_1415 Brain DIPGIV 410 8 864 70 1 65 566 LINC00173,MAP1LC3B2
SE_02_042900628 chr12:116524929-116549396 Sample_02_0429 Kidney 12364284_VHL+ 628 8 669 55 1 57 566 NCRNA00173,MAP1LC3B2
SE_02_118100940 chr12:116524988-116544714 Sample_02_1181 Brain GBM10 940 7 535 43 0 44 566 LINC00173,MAP1LC3B2
SE_02_152700473 chr12:116582918-116610314 Sample_02_1527 Embryo naive embryonic stem cell 473 12 837 32 2 136 0 MAP1LC3B2,LINC00173
SE_02_084100147 chr12:116586550-116687904 Sample_02_0841 Blood THP-1_untr 147 28 3088 78 6 166 0 MAP1LC3B2
SE_02_109800632 chr12:116590682-116612067 Sample_02_1098 Blood THP1_DMSO_noPMA 632 13 653 27 1 105 0 MAP1LC3B2
SE_02_036300052 chr12:116593685-116678138 Sample_02_0363 Haematopoietic and lymphoid tissue 697 52 11 2598 68 4 141 0 MAP1LC3B2
Genomic distribution of SEs associated with MAP1LC3B2
Genome Browser

The strength of the tissue affected by the gene

Expression of MAP1LC3B2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)