SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000212899
Gene: KRTAP3-3 Gene type: protein_coding
Strand: - External links:
Genomic region: chr17:40993430-40994164 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_023700283 chr17:40882848-40962745 Sample_02_0237 Colon V389 283 20 2248 304 5 254 1059 KRT20,KRT39,KRT23,KRTAP3-3,KRTAP3-1,KRT12,KRTAP3-2,KRT40
SE_02_008600041 chr17:40884278-40964950 Sample_02_0086 Pancreas CAPAN1 41 6 2274 307 4 255 1178 KRT20,KRT39,KRT23,KRTAP3-3,KRTAP3-1,KRT12,KRTAP3-2,KRT40
SE_02_008000006 chr17:40887898-40963236 Sample_02_0080 Lung Calu-3 6 12 2138 291 4 234 949 KRT23,KRT39,KRTAP3-3,KRTAP3-1,KRT12,KRT20,KRTAP3-2,KRT40
SE_02_076200273 chr17:40895403-40962680 Sample_02_0762 Podocyte podocyte_CTL 273 11 1921 277 3 221 943 KRT23,KRT39,KRT20,KRTAP3-3,KRTAP3-1,KRT12,KRTAP3-2,KRT40
SE_02_035400268 chr17:40900551-40958952 Sample_02_0354 Colon Colo205 268 7 1644 245 2 202 813 KRT23,KRT39,KRTAP3-3,KRT12,KRT20,KRTAP3-2,KRT40
SE_02_016600059 chr17:40900607-40964893 Sample_02_0166 Mammary gland HCC1954_Parental 59 7 1816 265 3 225 1068 KRT23,KRT39,KRTAP3-3,KRTAP3-1,KRT12,KRT20,KRTAP3-2,KRT40
SE_02_016700018 chr17:40900607-40964893 Sample_02_0167 Mammary gland HCC1954_LCC2 18 7 1816 265 3 225 1068 KRT23,KRT39,KRTAP3-3,KRTAP3-1,KRT12,KRT20,KRTAP3-2,KRT40
SE_02_152500034 chr17:40900653-40964394 Sample_02_1525 Stomach N87 DMSO 34 13 1799 263 3 222 1041 KRT23,KRT39,KRT20,KRTAP3-3,KRTAP3-1,KRT12,KRTAP3-2,KRT40
SE_02_070900178 chr17:40900704-40960077 Sample_02_0709 Pancreas hT85_organoid 178 20 1678 251 3 203 817 KRT23,KRT39,KRT20,KRTAP3-3,KRTAP3-1,KRT12,KRTAP3-2,KRT40
SE_02_042600030 chr17:40900926-40964765 Sample_02_0426 Colon HCT116_NONT 30 4 1805 263 3 223 1068 KRT23,KRT39,KRTAP3-3,KRTAP3-1,KRT12,KRT20,KRTAP3-2,KRT40
SE_01_005600128 chr17:40901493-40959839 Sample_01_0056 Bone osteoblast 128 5 1660 251 3 199 817 KRT23,KRT39,KRTAP3-3,KRTAP3-1,KRT12,KRT20,KRTAP3-2,KRT40
SE_02_017100103 chr17:40901546-40960967 Sample_02_0171 Lung IMR-90_proliferating 103 7 1693 254 3 205 882 KRT23,KRT39,KRTAP3-3,KRTAP3-1,KRT12,KRT20,KRTAP3-2,KRT40
SE_02_080900112 chr17:40902306-40964631 Sample_02_0809 Mammary gland T47D Serum 112 20 1771 261 3 219 1066 KRT23,KRT39,KRT20,KRTAP3-3,KRTAP3-1,KRT12,KRTAP3-2,KRT40
SE_02_035600265 chr17:40902971-40959710 Sample_02_0356 Colon Sw480 265 6 1614 245 2 197 817 KRT23,KRT39,KRTAP3-3,KRTAP3-1,KRT12,KRT20,KRTAP3-2,KRT40
SE_02_052100397 chr17:40933287-40959701 Sample_02_0521 Colon SW480 397 3 749 129 1 120 426 KRT23,KRT39,KRT20,KRTAP3-3,KRTAP3-1,KRTAP3-2,KRT40
SE_00_003100329 chr17:40933851-40961509 Sample_00_0031 Placenta placenta 329 3 796 131 2 129 491 KRT23,KRT39,KRTAP3-3,KRTAP3-1,KRT20,KRTAP3-2,KRT40
SE_02_035800542 chr17:40935181-40959581 Sample_02_0358 Colon LS180 542 2 697 122 1 110 426 KRT23,KRT39,KRTAP3-3,KRTAP3-1,KRT20,KRTAP3-2,KRT40
SE_02_155200931 chr17:40939809-40964748 Sample_02_1552 HMSCs hMSC ATCC SCRC-4000 931 17 698 103 1 98 357 KRT39,KRTAP3-3,KRTAP3-1,KRT23,KRTAP3-2,KRT40
SE_02_035200319 chr17:40945418-40964870 Sample_02_0352 Colon HCT116 319 4 560 77 1 96 357 KRT39,KRTAP3-3,KRTAP3-1,KRTAP3-2,KRT40,KRT23
SE_02_086300312 chr17:40945641-40961450 Sample_02_0863 Malignant rhaboid tumor TTC1240_empty 312 1 460 64 1 83 171 KRT39,KRTAP3-3,KRTAP3-1,KRT23,KRTAP3-2,KRT40
SE_02_042700087 chr17:40946377-40964610 Sample_02_0427 Colon HCT116_shPAF1 87 2 518 69 1 95 350 KRT39,KRTAP3-3,KRTAP3-1,KRTAP3-2,KRT40,KRT23
SE_01_003400123 chr17:40946575-40960332 Sample_01_0034 Colon HCT116 123 1 396 57 1 75 130 KRT39,KRTAP3-3,KRTAP3-1,KRTAP3-2,KRT40,KRT23
SE_02_086200414 chr17:40946805-40960918 Sample_02_0862 Malignant rhaboid tumor TTC1240_SMARCB1 FL 414 1 400 57 1 77 171 KRT39,KRTAP3-3,KRTAP3-1,KRT23,KRTAP3-2,KRT40
SE_02_086400485 chr17:40946930-40961137 Sample_02_0864 Malignant rhaboid tumor TTC1240_SMARCB1_K364del 485 1 409 57 1 75 171 KRT39,KRTAP3-3,KRTAP3-1,KRT23,KRTAP3-2,KRT40
SE_02_017300287 chr17:40947997-40960781 Sample_02_0173 Lung IMR-90_senescent 287 3 369 46 1 73 171 KRT39,KRTAP3-3,KRTAP3-1,KRTAP3-2,KRT40,KRT23
SE_02_086500511 chr17:40948230-40961230 Sample_02_0865 Malignant rhaboid tumor TTC1240_SMARCB1_R377H 511 1 380 47 1 69 171 KRT39,KRTAP3-3,KRTAP3-1,KRT23,KRTAP3-2,KRT40
SE_02_019700365 chr17:40948377-40957959 Sample_02_0197 Stomach SNU1750 365 6 270 33 0 33 0 KRT23,KRT39,KRTAP3-3,KRTAP3-2,KRT40
SE_02_017201081 chr17:40949033-40960980 Sample_02_0172 Lung IMR-90_quiescent 1081 2 340 38 1 62 171 KRT39,KRTAP3-3,KRTAP3-1,KRTAP3-2,KRT40,KRT23
SE_02_014300115 chr17:40949083-40959189 Sample_02_0143 Colon HCT116_Parental 115 1 283 31 0 55 106 KRT39,KRTAP3-3,KRTAP3-1,KRTAP3-2,KRT40,KRT23
SE_02_007300486 chr17:40949090-40960760 Sample_02_0073 Other 90-8TL_DMSO 486 3 336 38 1 62 171 KRT39,KRTAP3-3,KRTAP3-1,KRTAP3-2,KRT40,KRT23
SE_02_014100096 chr17:40949135-40959954 Sample_02_0141 Colon HCT116_Heterozygous_ARID1A-KO 96 1 306 34 1 56 106 KRT39,KRTAP3-3,KRTAP3-1,KRTAP3-2,KRT40,KRT23
SE_02_105200263 chr17:40949505-40959414 Sample_02_1052 Esophagus JH-EsoAd1 263 8 275 27 0 55 106 KRT39,KRTAP3-3,KRTAP3-1,KRT23,KRTAP3-2,KRT40
SE_02_007400497 chr17:40950785-40960493 Sample_02_0074 Other 90-8TL_PDJQ 497 2 272 32 1 57 153 KRT39,KRTAP3-3,KRTAP3-1,KRTAP3-2,KRT40,KRT23
SE_02_005700542 chr17:40950955-40964643 Sample_02_0057 Mammary gland vHMEC 542 5 373 41 1 75 355 KRT39,KRTAP3-3,KRTAP3-1,KRTAP3-2,KRT40,KRT23
SE_02_017500419 chr17:40950961-40960499 Sample_02_0175 Lung IMR-90_Etoposide 419 6 265 32 1 57 155 KRT39,KRTAP3-3,KRTAP3-1,KRTAP3-2,KRT40,KRT23
SE_02_026300921 chr17:40951061-40962843 Sample_02_0263 Osteoblastic hFOB_undifferentiated 921 2 323 37 1 71 238 KRT39,KRTAP3-3,KRTAP3-1,KRTAP3-2,KRT40,KRT23
SE_02_009900116 chr17:40951521-40964636 Sample_02_0099 Foreskin Epidermal-Stem-Cells_shDNMT3B 116 2 356 41 1 75 355 KRT39,KRTAP3-3,KRTAP3-1,KRTAP3-2,KRT40,KRT23
SE_03_000300193 chr17:40951567-40959581 Sample_03_0003 Foreskin foreskin-keratinocyte-calcium5.5day 193 1 209 25 0 52 106 KRT39,KRTAP3-3,KRTAP3-1,KRTAP3-2,KRT40,KRT23
SE_01_004500324 chr17:40951668-40964713 Sample_01_0045 Mammary gland mammary-epithelial-cell 324 2 354 41 1 75 356 KRT39,KRTAP3-3,KRTAP3-1,KRTAP3-2,KRT40,KRT23
SE_01_001900734 chr17:40951803-40958755 Sample_01_0019 Brain and spinal cord astrocyte 734 1 181 23 0 52 71 KRT39,KRT23,KRTAP3-3,KRTAP3-2,KRT40
SE_01_005900482 chr17:40951841-40959851 Sample_01_0059 Lung PC-9 482 1 217 28 1 53 106 KRT39,KRTAP3-3,KRTAP3-1,KRTAP3-2,KRT40,KRT23
SE_02_064801099 chr17:40951878-40964588 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 1099 8 348 39 1 75 345 KRT39,KRTAP3-3,KRTAP3-1,KRT23,KRTAP3-2,KRT40
SE_02_009700180 chr17:40951899-40964604 Sample_02_0097 Foreskin Epidermal-Stem-Cells_shCTRL 180 3 347 39 1 75 350 KRT39,KRTAP3-3,KRTAP3-1,KRTAP3-2,KRT40,KRT23
SE_02_000600230 chr17:40953649-40957543 Sample_02_0006 Cervical cervical-cancer_parental 230 2 105 13 0 14 0 KRT23,KRT39,KRTAP3-3,KRTAP3-2,KRT40
Genomic distribution of SEs associated with KRTAP3-3
Genome Browser

The strength of the tissue affected by the gene

Expression of KRTAP3-3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)