SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000141012
Gene: GALNS Gene type: protein_coding
Strand: - External links:
Genomic region: chr16:88813734-88856970 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_061500177 chr16:88745953-88809992 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 177 13 2910 243 12 127 1654 APRT,CDT1,PIEZO1,CTU2,LOC339059,RNF166,GALNS,MIR4722,TRAPPC2L,LOC100289580
SE_02_096300505 chr16:88754228-88810048 Sample_02_0963 Brain H3.3K27M_Tumor-derived cell-line_G477p6_cells 505 8 2453 210 10 118 1561 APRT,CDT1,PIEZO1,CTU2,LOC339059,RNF166,GALNS,MIR4722,TRAPPC2L,LOC100289580
SE_02_140500029 chr16:88756038-88809902 Sample_02_1405 Embryonic kidney HEK293_siBAHD1_W667G_mutant 29 16 2343 199 10 118 1522 APRT,CDT1,PIEZO1,CTU2,LOC339059,RNF166,GALNS,MIR4722,TRAPPC2L,LOC100289580
SE_02_130000072 chr16:88757766-88809880 Sample_02_1300 Blood KARPAS-45 72 14 2246 189 10 118 1516 APRT,CDT1,PIEZO1,LOC339059,GALNS,MIR4722,TRAPPC2L,LOC100289580
SE_02_107100008 chr16:88759251-88810041 Sample_02_1071 Blood Jurkat_WT 8 16 2197 187 10 118 1558 APRT,CDT1,PIEZO1,LOC339059,GALNS,MIR4722,TRAPPC2L,LOC100289580
SE_02_046000111 chr16:88759337-88810617 Sample_02_0460 Blood ME-1_I-10-49_6h 111 13 2229 190 10 121 1695 APRT,CDT1,PIEZO1,LOC339059,GALNS,MIR4722,TRAPPC2L,LOC100289580
SE_02_082600538 chr16:88764527-88810341 Sample_02_0826 Stomach gastric tumor 538 16 1978 169 10 98 1616 APRT,CDT1,PIEZO1,LOC339059,GALNS,MIR4722,TRAPPC2L,LOC100289580
SE_02_111200002 chr16:88766457-88813238 Sample_02_1112 T lymphocyte THP-6 T-ALL 2 1 2003 184 11 108 1928 APRT,CDT1,PIEZO1,GALNS,TRAPPC2L,LOC100289580,LOC339059
SE_02_083300154 chr16:88767601-88809967 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 154 9 1793 158 10 96 1544 APRT,CDT1,PIEZO1,GALNS,TRAPPC2L,LOC100289580,LOC339059
SE_02_106000240 chr16:88769541-88809977 Sample_02_1060 Bone TC71_SA2 KO 240 9 1702 148 9 92 1547 APRT,CDT1,PIEZO1,GALNS,TRAPPC2L,LOC100289580,LOC339059
SE_02_102800072 chr16:88769943-88810505 Sample_02_1028 Blood HL-60_WT 72 12 1714 150 9 94 1664 APRT,CDT1,PIEZO1,GALNS,TRAPPC2L,LOC100289580,LOC339059
SE_02_109500031 chr16:88770114-88809834 Sample_02_1095 Blood CD34 Erythroid cells_Don002 31 9 1671 147 9 92 1503 APRT,CDT1,PIEZO1,GALNS,TRAPPC2L,LOC100289580,LOC339059
SE_02_062200587 chr16:88779736-88806973 Sample_02_0622 Blood EOL1_Naive 587 12 1046 108 5 58 959 CDT1,PIEZO1,APRT,GALNS,LOC100289580,LOC339059,RNF166,ZC3H18,CBFA2T3,TRAPPC2L
SE_02_122200209 chr16:88780097-88809938 Sample_02_1222 Bone marrow KMS12 209 6 1220 119 5 70 1539 APRT,CDT1,PIEZO1,GALNS,TRAPPC2L,LOC100289580,LOC339059
SE_02_121600018 chr16:88780303-88809648 Sample_02_1216 Blood Jurkat ZBTB1 KO 18 4 1203 115 5 66 1465 APRT,CDT1,PIEZO1,GALNS,TRAPPC2L,LOC100289580,LOC339059
SE_02_121700041 chr16:88780331-88809871 Sample_02_1217 Blood Jurkat ZBTB1 KO_ZBTB1_expressing FLAG-ZBTB1_Asparagine deprivation 41 6 1212 117 5 70 1514 APRT,CDT1,PIEZO1,GALNS,TRAPPC2L,LOC100289580,LOC339059
SE_02_099400327 chr16:88780391-88809386 Sample_02_0994 Blood MOLM13_SIK3TQ 327 9 1191 113 5 66 1413 CDT1,PIEZO1,APRT,GALNS,TRAPPC2L,LOC100289580,LOC339059
SE_02_050100119 chr16:88781513-88808038 Sample_02_0501 Blood HL-60_CTRL 119 11 1046 95 3 60 1134 CDT1,PIEZO1,APRT,GALNS,TRAPPC2L,LOC339059
SE_02_099500443 chr16:88789385-88809311 Sample_02_0995 Blood MOLM-13_empty vector 443 5 861 79 1 32 1265 CDT1,PIEZO1,APRT,GALNS,TRAPPC2L,LOC339059
SE_02_073900323 chr16:88795224-88812301 Sample_02_0739 Blood Nalm6 323 6 809 81 1 47 1795 APRT,CDT1,PIEZO1,GALNS,TRAPPC2L
SE_02_045900370 chr16:88798116-88808805 Sample_02_0459 Blood ME-1_DMSO_6h 370 1 503 51 0 32 1182 CDT1,PIEZO1,APRT,GALNS,TRAPPC2L
SE_02_043100085 chr16:88798343-88813677 Sample_02_0431 Peripheral blood CD34+HSPC-derived-erythroid-precursors 85 1 742 85 1 47 1826 APRT,CDT1,FAM38A,GALNS,TRAPPC2L
SE_02_025600896 chr16:88798449-88808450 Sample_02_0256 Peripheral blood MV411 896 1 474 49 0 32 1090 CDT1,FAM38A,APRT,GALNS,TRAPPC2L
SE_02_034300634 chr16:88798591-88807080 Sample_02_0343 Bone marrow HSPC_A0 634 1 366 45 0 22 849 CDT1,FAM38A,APRT,GALNS
SE_02_068200265 chr16:88798622-88808070 Sample_02_0682 Blood Kasumi-1 265 1 426 47 0 28 1005 CDT1,PIEZO1,APRT,GALNS,TRAPPC2L
SE_02_012800566 chr16:88801028-88808418 Sample_02_0128 Haematopoietic and lymphoid tissue ALL-SIL 566 1 349 37 0 32 1083 CDT1,FAM38A,APRT,GALNS,TRAPPC2L
SE_02_122800936 chr16:88801303-88811888 Sample_02_1228 Mammary gland MDA-MB-231_2 936 2 520 53 1 46 1740 APRT,CDT1,PIEZO1,GALNS,TRAPPC2L
SE_02_055500319 chr16:88802064-88813439 Sample_02_0555 Other HAP1_WT 319 2 575 61 1 47 1795 APRT,CDT1,PIEZO1,GALNS,TRAPPC2L
SE_02_143201511 chr16:88802125-88807132 Sample_02_1432 Bone A673 STAG2 WT 1511 1 223 24 0 22 861 CDT1,PIEZO1,APRT,GALNS,TRAPPC2L
SE_02_058400225 chr16:88802246-88813575 Sample_02_0584 Lung H1299 WT 225 5 577 60 1 47 1801 APRT,CDT1,PIEZO1,GALNS,TRAPPC2L
SE_02_062500140 chr16:88802447-88813653 Sample_02_0625 Mammary gland WS8_4OHT 140 2 575 61 1 47 1824 APRT,CDT1,PIEZO1,GALNS,TRAPPC2L
SE_02_062700126 chr16:88802514-88813680 Sample_02_0627 Mammary gland WS8_VEH 126 3 575 61 1 47 1827 APRT,CDT1,PIEZO1,GALNS,TRAPPC2L
SE_02_035800607 chr16:88802600-88813444 Sample_02_0358 Colon LS180 607 2 568 59 1 47 1795 APRT,CDT1,FAM38A,GALNS,TRAPPC2L
SE_02_043600482 chr16:88802626-88813324 Sample_02_0436 Kidney HEK293A_empty-vector_DMSO_6h 482 2 564 58 1 47 1795 APRT,CDT1,FAM38A,GALNS,TRAPPC2L
SE_02_111400056 chr16:88803070-88812045 Sample_02_1114 Embryonic kidney HEK293 56 4 482 42 1 47 1785 APRT,CDT1,PIEZO1,GALNS,TRAPPC2L
SE_01_011200431 chr16:88805848-88812748 Sample_01_0112 Embryonic kidney HEK293_encode 431 2 374 31 1 32 1222 APRT,CDT1,PIEZO1,GALNS,TRAPPC2L
SE_02_104901134 chr16:88806510-88813430 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1134 1 377 37 1 29 1068 APRT,CDT1,PIEZO1,GALNS,TRAPPC2L
SE_02_133700207 chr16:88809185-88813357 Sample_02_1337 Lung NCI-H1299-wtSMARCA4_Dox_SAHA 207 2 209 30 1 15 545 APRT,CDT1,PIEZO1,GALNS,TRAPPC2L
SE_02_133300171 chr16:88809252-88813452 Sample_02_1333 Lung NCI-H1299_wtSMARCA4 171 1 212 31 1 15 539 APRT,CDT1,PIEZO1,GALNS,TRAPPC2L
SE_02_143301255 chr16:88809407-88812915 Sample_02_1433 Bone A673 STAG2 null 1255 1 170 21 1 15 509 APRT,PIEZO1,CDT1,GALNS,TRAPPC2L
SE_02_158401204 chr16:88809620-88813601 Sample_02_1584 Brain U87 GBM_Mock 1204 1 192 27 1 15 475 APRT,PIEZO1,CDT1,GALNS,TRAPPC2L
SE_02_000400090 chr16:88863298-88911571 Sample_02_0004 Mammary gland MCF-7_10Gygamma_7.5h 90 24 2474 230 3 171 2576 CBFA2T3,PABPN1L,TRAPPC2L,GALNS
SE_02_138400132 chr16:88869370-88927967 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 132 23 3017 277 4 193 1689 CBFA2T3,PABPN1L,GALNS,LOC100129697,TRAPPC2L
SE_02_085200011 chr16:88869565-88941255 Sample_02_0852 Mammary gland MCF7L-P 11 17 3551 329 4 243 1804 LOC100129697,CBFA2T3,PABPN1L,GALNS,TRAPPC2L
SE_02_115900011 chr16:88869565-88941255 Sample_02_1159 Mammary gland MCF7 11 17 3551 329 4 243 1804 LOC100129697,CBFA2T3,PABPN1L,GALNS,TRAPPC2L,CDT1,PIEZO1
SE_02_087300368 chr16:88869592-88887041 Sample_02_0873 Colon HCT116_siGLIS2.1-5FU 368 5 814 36 1 38 1253 CBFA2T3,PABPN1L,TRAPPC2L,GALNS
SE_02_021601125 chr16:88869766-88887006 Sample_02_0216 Skin NHEK_scramble 1125 5 803 35 1 38 1253 CBFA2T3,PABPN1L,TRAPPC2L,GALNS
SE_02_087200451 chr16:88869785-88886959 Sample_02_0872 Colon HCT116_siCtrl-5FU 451 7 802 35 1 38 1253 CBFA2T3,PABPN1L,TRAPPC2L,GALNS
SE_02_085300020 chr16:88870471-88943738 Sample_02_0853 Mammary gland MCF7L-TamR 20 20 3589 333 4 269 1997 LOC100129697,CBFA2T3,PABPN1L,GALNS,TRAPPC2L
SE_02_077900021 chr16:88870650-89006239 Sample_02_0779 Lymphoma U2932 21 35 6061 495 9 374 2234 LOC100129697,CBFA2T3,PABPN1L,GALNS,TRAPPC2L
SE_02_087100025 chr16:88871081-88904639 Sample_02_0871 Colon HCT116_GLIS2.2-DMSO 25 7 1748 136 2 140 1689 CBFA2T3,PABPN1L,LOC100129697,TRAPPC2L,GALNS
SE_02_114400152 chr16:88871794-88886561 Sample_02_1144 Peripheral nerve S462_PRC2 mutant 152 5 705 29 1 38 1253 CBFA2T3,PABPN1L,TRAPPC2L,GALNS
SE_02_010600384 chr16:88876659-88902152 Sample_02_0106 Skin NHEK_M 384 9 1389 103 2 119 1390 CBFA2T3,PABPN1L,TRAPPC2L,GALNS
SE_02_001900330 chr16:88879037-88929148 Sample_02_0019 Embryo Neural crest cells 330 13 2688 266 4 183 1206 CBFA2T3,PABPN1L,TRAPPC2L,GALNS
SE_02_133400095 chr16:88879192-88928427 Sample_02_1334 Lung NCI-H1299_mutSMARCA4 95 15 2647 260 4 181 1182 CBFA2T3,PABPN1L,GALNS,LOC100129697,TRAPPC2L
SE_02_152900474 chr16:88879787-88993288 Sample_02_1529 Peripheral blood neutrophils_0BC75 474 44 5198 449 8 343 1643 LOC100129697,CBFA2T3,PABPN1L,GALNS,TRAPPC2L
SE_02_122900038 chr16:88880074-89004195 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 38 45 5581 475 9 350 1643 LOC100129697,CBFA2T3,PABPN1L,GALNS,TRAPPC2L,CDT1
SE_02_036700245 chr16:88881543-88905622 Sample_02_0367 Skeletal muscle NS129 245 6 1353 120 2 123 864 CBFA2T3,PABPN1L,TRAPPC2L,GALNS
SE_01_008401450 chr16:88882053-88942358 Sample_01_0084 Spleen spleen 1450 9 3022 307 4 249 1127 CBFA2T3,PABPN1L,TRAPPC2L,GALNS
SE_02_036800290 chr16:88882257-88905149 Sample_02_0368 Skeletal muscle NS134 290 5 1290 115 2 123 819 CBFA2T3,PABPN1L,TRAPPC2L,GALNS
SE_01_009000796 chr16:88885567-88941553 Sample_01_0090 Lung upper-lobe-of-left-lung 796 8 2816 296 4 225 735 CBFA2T3,PABPN1L,TRAPPC2L,GALNS
SE_00_002200518 chr16:88885762-88941224 Sample_00_0022 Lung lung_30y 518 10 2807 296 4 207 683 CBFA2T3,PABPN1L,TRAPPC2L,GALNS
SE_02_075800021 chr16:88886216-88941844 Sample_02_0758 Peripheral blood REH 21 20 2775 296 4 222 701 LOC100129697,CBFA2T3,PABPN1L,GALNS,TRAPPC2L
SE_00_005500913 chr16:88886880-88937193 Sample_00_0055 Spleen spleen 34y 913 9 2591 287 3 162 436 CBFA2T3,PABPN1L,GALNS,LOC100129697,TRAPPC2L,ACSF3,RP11-830F9.6
SE_02_036200009 chr16:88887638-88943796 Sample_02_0362 Haematopoietic and lymphoid tissue REH 9 9 2779 295 3 214 744 CBFA2T3,PABPN1L,TRAPPC2L,GALNS
SE_02_116000379 chr16:88895664-88925692 Sample_02_1160 Embryo H1_shLuc 379 10 1620 186 2 111 235 CBFA2T3,PABPN1L,LOC100129697,TRAPPC2L,GALNS
SE_02_021500209 chr16:88896513-88910386 Sample_02_0215 Skin NHEK_siGRHL3 209 3 779 101 2 65 235 CBFA2T3,PABPN1L,TRAPPC2L,GALNS
SE_02_034400025 chr16:88899144-88941670 Sample_02_0344 Blood CD34 25 4 2053 231 3 155 329 CBFA2T3,PABPN1L,TRAPPC2L,GALNS
SE_02_146500072 chr16:88899904-88943820 Sample_02_1465 Ovary CAOV4cis 72 13 2082 234 3 164 448 LOC100129697,CBFA2T3,PABPN1L,GALNS,TRAPPC2L
SE_02_087200224 chr16:88901160-88928151 Sample_02_0872 Colon HCT116_siCtrl-5FU 224 14 1408 167 2 87 140 CBFA2T3,PABPN1L,GALNS,LOC100129697,TRAPPC2L
SE_02_146400068 chr16:88901485-88949473 Sample_02_1464 Ovary CAOV4 68 15 2201 231 3 163 403 LOC100129697,CBFA2T3,PABPN1L,GALNS,TRAPPC2L
SE_02_087300126 chr16:88902456-88928266 Sample_02_0873 Colon HCT116_siGLIS2.1-5FU 126 13 1336 160 2 67 0 CBFA2T3,PABPN1L,GALNS,LOC100129697,TRAPPC2L
SE_02_078100064 chr16:88902579-89015556 Sample_02_0781 Lymphoma Pfeiffer_DMSO 64 30 4670 401 7 248 545 LOC100129697,CBFA2T3,PABPN1L,GALNS,TRAPPC2L
SE_02_089600769 chr16:88904118-88941181 Sample_02_0896 Heart left ventricle_LV1294 769 10 1778 200 2 96 91 LOC100129697,CBFA2T3,PABPN1L,GALNS,TRAPPC2L
SE_02_089900911 chr16:88904356-88937602 Sample_02_0899 Heart left ventricle_LV1400 911 10 1629 188 2 60 0 CBFA2T3,PABPN1L,GALNS,LOC100129697,TRAPPC2L
SE_00_004000668 chr16:88904386-88941403 Sample_00_0040 Spleen spleen_30y 668 5 1761 194 2 111 158 CBFA2T3,PABPN1L,TRAPPC2L,GALNS,ACSF3,RP11-830F9.6
SE_02_040300131 chr16:88905103-88943258 Sample_02_0403 Mammary gland T-47D_untreat 131 6 1756 193 2 129 308 CBFA2T3,PABPN1L,TRAPPC2L,GALNS
SE_02_083700402 chr16:88905125-88942832 Sample_02_0837 Bone marrow TEX-Luciferase-Rx_cells 402 4 1739 192 2 129 308 LOC100129697,CBFA2T3,PABPN1L,GALNS,TRAPPC2L
SE_02_081000009 chr16:88905197-88942998 Sample_02_0810 Mammary gland T47D noSerum 9 16 1743 192 2 129 308 LOC100129697,CBFA2T3,PABPN1L,GALNS,TRAPPC2L
SE_02_080900032 chr16:88905207-88943161 Sample_02_0809 Mammary gland T47D Serum 32 8 1746 193 2 129 308 LOC100129697,CBFA2T3,PABPN1L,GALNS,TRAPPC2L
SE_02_108900029 chr16:88905232-88943043 Sample_02_1089 Mammary gland T47D_shCtrl_shRING1B_45min 29 13 1743 192 2 129 308 LOC100129697,CBFA2T3,PABPN1L,GALNS,TRAPPC2L
SE_02_123400115 chr16:88905249-88941206 Sample_02_1234 Mammary gland T47D_Full 115 10 1706 188 2 101 100 LOC100129697,CBFA2T3,PABPN1L,GALNS,TRAPPC2L
SE_02_085000044 chr16:88905255-88942697 Sample_02_0850 Mammary gland MCF7L-P_FOXA1-Dox 44 18 1727 192 2 129 308 LOC100129697,CBFA2T3,PABPN1L,GALNS,TRAPPC2L
SE_02_108600257 chr16:88905292-88938868 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 257 9 1628 185 2 60 0 CBFA2T3,PABPN1L,GALNS,LOC100129697,TRAPPC2L
SE_02_108700132 chr16:88905302-88942977 Sample_02_1087 Mammary gland T47D_shCtrl_shRING1B_0 132 9 1739 191 2 129 308 LOC100129697,CBFA2T3,PABPN1L,GALNS,TRAPPC2L
SE_02_108800076 chr16:88905322-88942965 Sample_02_1088 Mammary gland T47D_shCtrl_45min 76 11 1738 191 2 129 308 LOC100129697,CBFA2T3,PABPN1L,GALNS,TRAPPC2L
SE_02_109000319 chr16:88905340-88929990 Sample_02_1090 Mammary gland T47D_shCtrl_8hr 319 10 1256 143 2 55 0 CBFA2T3,PABPN1L,GALNS,LOC100129697,TRAPPC2L
SE_02_109200114 chr16:88905354-88948973 Sample_02_1092 Mammary gland T47D_shCtrl_24hr 114 12 1950 197 3 129 308 LOC100129697,CBFA2T3,PABPN1L,GALNS,TRAPPC2L
SE_02_109100262 chr16:88905367-88929819 Sample_02_1091 Mammary gland T47D_shCtrl_shRING1B_8hr 262 5 1246 143 2 55 0 CBFA2T3,PABPN1L,GALNS,LOC100129697,TRAPPC2L
SE_02_109300211 chr16:88905410-88948562 Sample_02_1093 Mammary gland T47D_shCtrl_shRING1B_24hr 211 11 1934 197 3 129 308 LOC100129697,CBFA2T3,PABPN1L,GALNS,TRAPPC2L
SE_02_000200080 chr16:88905699-88943014 Sample_02_0002 Mammary gland MCF-7_10Gygamma_2.5h 80 3 1720 188 2 129 308 CBFA2T3,PABPN1L,TRAPPC2L,GALNS
SE_02_052700182 chr16:88906176-88937757 Sample_02_0527 Mammary gland MCF7_WT 182 18 1531 174 1 60 0 CBFA2T3,PABPN1L,GALNS,LOC100129697,TRAPPC2L
SE_02_083600305 chr16:88906265-88959342 Sample_02_0836 Bone marrow TEX-HIST1H3H-WT-Rx_cells 305 7 2318 228 2 138 308 LOC100129697,CBFA2T3,PABPN1L,GALNS,TRAPPC2L
Genomic distribution of SEs associated with GALNS
Genome Browser

The strength of the tissue affected by the gene

Expression of GALNS

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)