SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000015413
Gene: DPEP1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr16:89613308-89638456 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_103500482 chr16:89529960-89565882 Sample_02_1035 Mammary gland HCC70_Vehicle 482 14 1606 156 9 103 2754 SNORD68,SPG7,RPL13,ANKRD11,CPNE7,DPEP1
SE_02_104800435 chr16:89531573-89566048 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 435 13 1538 151 9 99 2701 SNORD68,SPG7,RPL13,ANKRD11,CPNE7,DPEP1
SE_02_120400510 chr16:89534084-89566489 Sample_02_1204 Brain NB2 510 8 1451 143 9 81 2578 SNORD68,SPG7,RPL13,ANKRD11,CPNE7,DPEP1
SE_02_133400119 chr16:89538525-89566262 Sample_02_1334 Lung NCI-H1299_mutSMARCA4 119 9 1261 118 6 78 2300 SNORD68,SPG7,RPL13,ANKRD11,CPNE7,DPEP1
SE_02_001500361 chr16:89544347-89573448 Sample_02_0015 Liver HepG2_shNS 361 4 1277 130 4 78 2347 RPL13,SNORD68,SPG7,DPEP1,CPNE7
SE_02_104601877 chr16:89550153-89573277 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1877 9 1021 106 3 64 1768 SNORD68,SPG7,RPL13,CPNE7,DPEP1
SE_02_024600343 chr16:89552023-89566665 Sample_02_0246 Mammary gland MCF-7_estradiol 343 2 676 69 3 59 1594 RPL13,SNORD68,SPG7,DPEP1,CPNE7
SE_02_096200545 chr16:89553828-89570281 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 545 3 743 72 3 53 1513 SNORD68,SPG7,RPL13,CPNE7,DPEP1
SE_02_035200297 chr16:89556570-89566847 Sample_02_0352 Colon HCT116 297 1 475 53 2 48 1325 RPL13,SNORD68,SPG7,DPEP1,CPNE7
SE_02_007300682 chr16:89556688-89563569 Sample_02_0073 Other 90-8TL_DMSO 682 2 307 25 1 45 752 RPL13,SNORD68,SPG7,DPEP1,CPNE7
SE_01_003400349 chr16:89556866-89566735 Sample_01_0034 Colon HCT116 349 1 457 53 2 45 1280 RPL13,SNORD68,SPG7,DPEP1,CPNE7
SE_02_074200443 chr16:89557302-89566013 Sample_02_0742 Embryo ESCs_day0 443 2 406 47 2 37 1083 SNORD68,SPG7,RPL13,CPNE7,DPEP1
SE_02_158401226 chr16:89557335-89565888 Sample_02_1584 Brain U87 GBM_Mock 1226 4 402 45 2 37 1054 SNORD68,SPG7,RPL13,CPNE7,DPEP1
SE_02_042700379 chr16:89557592-89566821 Sample_02_0427 Colon HCT116_shPAF1 379 1 428 50 2 36 1159 RPL13,SNORD68,SPG7,DPEP1,CPNE7
SE_02_125800706 chr16:89557723-89566626 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 706 2 416 50 2 36 1124 SNORD68,SPG7,RPL13,CPNE7,DPEP1
SE_02_153900769 chr16:89557814-89566542 Sample_02_1539 Nasopharyngeal C666-1 769 4 409 50 2 36 1099 SNORD68,RPL13,SPG7,CPNE7,DPEP1
SE_02_076000692 chr16:89558295-89566453 Sample_02_0760 Ovary BIN-67_SMARCA4 692 1 383 47 2 36 1062 SNORD68,RPL13,SPG7,CPNE7,DPEP1
SE_02_049101028 chr16:89558308-89566471 Sample_02_0491 Pharyng Detroit 562-Control 1028 2 384 47 2 36 1063 SNORD68,RPL13,SPG7,CPNE7,DPEP1
SE_02_000200375 chr16:89558324-89566922 Sample_02_0002 Mammary gland MCF-7_10Gygamma_2.5h 375 1 402 49 2 36 1122 RPL13,SNORD68,DPEP1,SPG7,CPNE7
SE_02_094800870 chr16:89558370-89566362 Sample_02_0948 Pharyng Detroit562 870 2 376 46 2 36 1050 SNORD68,RPL13,SPG7,CPNE7,DPEP1
SE_02_147000650 chr16:89558534-89566378 Sample_02_1470 Umbilical Vein H441 650 3 370 46 2 36 1054 SNORD68,RPL13,CPNE7,DPEP1
SE_02_126800893 chr16:89558551-89566101 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 893 2 357 45 2 36 993 SNORD68,RPL13,CPNE7,DPEP1
SE_02_049201064 chr16:89558551-89566350 Sample_02_0492 Pharyng Detroit 562_LPS 1064 2 369 46 2 36 1048 SNORD68,RPL13,CPNE7,DPEP1
SE_01_011400363 chr16:89558565-89563684 Sample_01_0114 Colon HCT116_encode 363 1 228 20 1 36 547 SNORD68,RPL13,CPNE7,DPEP1
SE_02_132200749 chr16:89558587-89565988 Sample_02_1322 Connective Tissue HT1080_WT 749 3 351 43 2 36 967 SNORD68,RPL13,CPNE7,DPEP1
SE_02_061000941 chr16:89558588-89566296 Sample_02_0610 Liposarcoma MLS 1765-92 941 3 365 45 2 36 1036 SNORD68,RPL13,CPNE7,DPEP1
SE_02_113200776 chr16:89558588-89566627 Sample_02_1132 Pancreas KLM1 wt 776 3 379 47 2 36 1086 SNORD68,RPL13,CPNE7,DPEP1
SE_02_040300301 chr16:89558746-89567040 Sample_02_0403 Mammary gland T-47D_untreat 301 1 382 48 2 36 1138 RPL13,SNORD68,DPEP1,CPNE7
SE_02_140500080 chr16:89558779-89565948 Sample_02_1405 Embryonic kidney HEK293_siBAHD1_W667G_mutant 80 4 335 42 2 36 959 SNORD68,RPL13,CPNE7,DPEP1
SE_02_058400348 chr16:89558831-89566376 Sample_02_0584 Lung H1299 WT 348 2 351 45 2 36 1052 SNORD68,RPL13,CPNE7,DPEP1
SE_02_146001007 chr16:89558854-89566304 Sample_02_1460 Blood Mutz-3 1007 2 347 44 2 36 1040 SNORD68,RPL13,CPNE7,DPEP1
SE_02_143201047 chr16:89558970-89564548 Sample_02_1432 Bone A673 STAG2 WT 1047 1 254 28 2 36 670 SNORD68,RPL13,CPNE7,DPEP1
SE_02_021200149 chr16:89559008-89570875 Sample_02_0212 Burkitts lymphoma of the left maxilla Raji_DMSO 149 1 538 61 2 36 1138 RPL13,SNORD68,DPEP1,CPNE7
SE_02_147600568 chr16:89559072-89572883 Sample_02_1476 Bone EW-1 568 3 611 74 2 36 1138 SNORD68,RPL13,CPNE7,DPEP1
SE_02_138100517 chr16:89559167-89566192 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 517 1 333 44 2 36 1018 SNORD68,RPL13,CPNE7,DPEP1
SE_02_140400074 chr16:89559286-89566160 Sample_02_1404 Embryonic kidney HEK293_siBAHD1_WT 74 4 329 44 2 36 1007 SNORD68,RPL13,CPNE7,DPEP1
SE_02_132001165 chr16:89559351-89565962 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 1165 2 319 41 2 36 962 SNORD68,RPL13,CPNE7,DPEP1
SE_02_102500875 chr16:89559365-89566579 Sample_02_1025 Esophagus KYSE150 875 1 344 46 2 36 1082 SNORD68,RPL13,CPNE7,DPEP1
SE_02_108600484 chr16:89559367-89566507 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 484 1 341 45 2 36 1065 SNORD68,RPL13,CPNE7,DPEP1
SE_02_136700656 chr16:89559374-89566458 Sample_02_1367 Pancreas Capan1-untreated 656 2 339 45 2 36 1062 SNORD68,RPL13,CPNE7,DPEP1
SE_01_001200635 chr16:89559378-89566478 Sample_01_0012 Lung A549_dexamethasone_1h 635 1 340 45 2 36 1063 RPL13,SNORD68,DPEP1,CPNE7
SE_02_109000462 chr16:89559534-89566416 Sample_02_1090 Mammary gland T47D_shCtrl_8hr 462 2 332 45 2 36 1059 SNORD68,RPL13,CPNE7,DPEP1
SE_02_043600456 chr16:89559647-89566536 Sample_02_0436 Kidney HEK293A_empty-vector_DMSO_6h 456 2 334 45 2 36 1071 RPL13,SNORD68,DPEP1,CPNE7
SE_02_039601134 chr16:89559670-89566485 Sample_02_0396 Skin NHEK-D 1134 1 333 45 2 36 1063 RPL13,SNORD68,DPEP1,CPNE7
SE_02_003601138 chr16:89559689-89566481 Sample_02_0036 Embryo H7 1138 1 332 45 2 36 1063 RPL13,SNORD68,DPEP1,CPNE7
SE_02_111400061 chr16:89559779-89565209 Sample_02_1114 Embryonic kidney HEK293 61 2 255 34 2 36 790 SNORD68,RPL13,CPNE7,DPEP1
SE_02_062900612 chr16:89564753-89603057 Sample_02_0629 Gastrointestinal Stromal GIST-T1_DMSO 612 10 1762 187 4 92 2582 RPL13,CPNE7,SNORD68,DPEP1
SE_02_107000083 chr16:89568140-89617817 Sample_02_1070 Blood SupT1_WT 83 16 2220 247 6 98 2235 DPEP1,CPNE7,RPL13,SNORD68,CHMP1A,SPATA33
SE_02_114500210 chr16:89569967-89606287 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 210 16 1623 181 4 94 2151 CPNE7,RPL13,SNORD68,DPEP1
SE_02_114400154 chr16:89570950-89586457 Sample_02_1144 Peripheral nerve S462_PRC2 mutant 154 5 643 69 2 38 1040 CPNE7,RPL13,SNORD68,DPEP1
SE_02_000400160 chr16:89571307-89617817 Sample_02_0004 Mammary gland MCF-7_10Gygamma_7.5h 160 12 2087 234 6 98 2235 DPEP1,CPNE7,CHMP1A,RPL13,C16ORF55,SNORD68
SE_02_143301464 chr16:89573812-89577780 Sample_02_1433 Bone A673 STAG2 null 1464 1 122 19 1 29 342 CPNE7,RPL13,SNORD68,DPEP1
SE_02_137400213 chr16:89574420-89603076 Sample_02_1374 Pancreas Pancreatic_tumor_associated_fibroblasts_B009B_untreated 213 10 1367 137 4 92 2151 CPNE7,RPL13,SNORD68,DPEP1
SE_02_016300367 chr16:89581217-89587028 Sample_02_0163 Prostate C4-2B_SR2211_24h 367 2 270 23 1 11 747 CPNE7,RPL13,DPEP1,SNORD68
SE_02_103501995 chr16:89581639-89615846 Sample_02_1035 Mammary gland HCC70_Vehicle 1995 11 1565 175 5 69 1790 DPEP1,CPNE7,RPL13,SNORD68,CHMP1A,SPATA33
SE_02_012800435 chr16:89581818-89617860 Sample_02_0128 Haematopoietic and lymphoid tissue ALL-SIL 435 12 1650 186 5 69 1790 DPEP1,CPNE7,CHMP1A,RPL13,C16ORF55,SNORD68
SE_02_133400220 chr16:89582408-89616817 Sample_02_1334 Lung NCI-H1299_mutSMARCA4 220 12 1585 177 4 69 1790 DPEP1,CPNE7,RPL13,SNORD68,CHMP1A,SPATA33
SE_02_103200427 chr16:89585782-89617153 Sample_02_1032 Head and neck SCC1 JQ1 427 16 1446 170 4 60 1269 DPEP1,CPNE7,RPL13,SNORD68,CHMP1A,SPATA33
SE_02_107100060 chr16:89586173-89617131 Sample_02_1071 Blood Jurkat_WT 60 14 1434 168 4 60 1195 DPEP1,CPNE7,RPL13,SNORD68,CHMP1A,SPATA33
SE_02_104801172 chr16:89589614-89617409 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1172 11 1242 147 4 44 813 DPEP1,CPNE7,RPL13,SNORD68,CHMP1A,SPATA33
SE_02_130100371 chr16:89593279-89616521 Sample_02_1301 Blood PER-117 371 9 992 116 3 39 526 DPEP1,CPNE7,RPL13,SNORD68,CHMP1A,SPATA33
SE_02_130000371 chr16:89594110-89618992 Sample_02_1300 Blood KARPAS-45 371 9 1048 126 3 39 526 DPEP1,CPNE7,RPL13,SNORD68,CHMP1A,SPATA33
SE_02_057300703 chr16:89599273-89618835 Sample_02_0573 Blood Nalm6_1 703 9 823 105 3 11 84 DPEP1,RPL13,SNORD68,CPNE7,CHMP1A,SPATA33,CDK10,SPG7
SE_02_073900616 chr16:89603051-89618810 Sample_02_0739 Blood Nalm6 616 5 656 88 2 6 84 DPEP1,RPL13,SNORD68,CPNE7,CHMP1A,SPATA33,CDK10,SPG7
SE_02_063900285 chr16:89604653-89609230 Sample_02_0639 Blood T-ALL PDX 285 2 185 31 1 2 0 RPL13,DPEP1,SNORD68,CPNE7,CHMP1A,SPATA33
SE_02_088500576 chr16:89604752-89618863 Sample_02_0885 Blood NALM6_2 576 3 625 77 2 6 84 DPEP1,RPL13,SNORD68,CPNE7,CHMP1A,SPATA33,CDK10,SPG7
SE_02_104801186 chr16:89641118-89664574 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1186 9 1046 130 10 51 1742 SPATA33,CHMP1A,SPATA2L,DPEP1,VPS9D1-AS1,CDK10
Genomic distribution of SEs associated with DPEP1
Genome Browser

The strength of the tissue affected by the gene

Expression of DPEP1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)