SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000080822
Gene: CLDND1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr3:98497912-98523066 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_151100010 chr3:98511144-98585867 Sample_02_1511 Lung H3122_untreated 10 20 1942 152 10 216 936 GPR15,CPOX,CLDND1,OR5K2,OR5K1
SE_02_154800054 chr3:98511299-98591671 Sample_02_1548 Gastrointestinal Stromal GIST-226 54 30 2117 170 10 225 1065 GPR15,CPOX,CLDND1,OR5K2,OR5K1
SE_02_102900084 chr3:98511519-98591962 Sample_02_1029 Colon HCT116 84 33 2124 170 10 225 1065 GPR15,CPOX,CLDND1,OR5K2,OR5K1
SE_02_060700020 chr3:98512766-98591890 Sample_02_0607 Colon HCT116 TP53-/-_Nutlin-3A 20 29 2086 167 10 222 1065 GPR15,CPOX,CLDND1,OR5K2,OR5K1
SE_02_060800018 chr3:98512800-98586674 Sample_02_0608 Colon HCT116_Nutlin-3A 18 40 1941 153 10 213 936 GPR15,CPOX,CLDND1,OR5K2,OR5K1
SE_02_045700012 chr3:98515373-98574187 Sample_02_0457 Th17 lymphocytes Th17-IL-10- Day 5 12 25 1489 109 8 188 698 GPR15,CLDND1,OR5K2,OR5K1,CPOX
SE_02_045500018 chr3:98517780-98574564 Sample_02_0455 Th17 lymphocytes Th17-IL-10+ Day 5 18 19 1447 110 8 168 550 GPR15,CLDND1,OR5K2,OR5K1,CPOX
SE_02_152500157 chr3:98520492-98565972 Sample_02_1525 Stomach N87 DMSO 157 11 1179 89 5 152 510 GPR15,CLDND1,OR5K2,CPOX
SE_02_045600024 chr3:98520780-98574914 Sample_02_0456 Th17 lymphocytes Th17-IL-10- Day 0 24 5 1402 109 7 164 510 GPR15,CLDND1,OR5K2,CPOX
SE_02_045400028 chr3:98520960-98574529 Sample_02_0454 Th17 lymphocytes Th17-IL-10+ Day 0 28 6 1382 108 7 164 503 GPR15,CLDND1,OR5K2,CPOX
SE_02_139200218 chr3:98523095-98585360 Sample_02_1392 Peripheral blood Mac-2A_ALK- 218 11 1642 141 9 149 364 GPR15,CPOX,OR5K2,CLDND1
SE_02_138700160 chr3:98523141-98589607 Sample_02_1387 Peripheral blood Mac-1_ALK- 160 13 1776 156 9 162 457 GPR15,CPOX,OR5K2,CLDND1
SE_02_078200009 chr3:98524421-98574764 Sample_02_0782 Blood MEC1 9 11 1300 103 7 132 175 GPR15,OR5K2,CLDND1,CPOX
SE_01_003000007 chr3:98524989-98574776 Sample_01_0030 Haematopoietic and lymphoid tissue blood GM12878 7 6 1291 103 7 132 175 GPR15,OR5K2,CLDND1,CPOX,OR5K3,OR5K4
SE_02_078400022 chr3:98525040-98574170 Sample_02_0784 Blood OSU-CLL 22 18 1269 102 7 132 175 GPR15,OR5K2,CLDND1,CPOX
SE_02_142900688 chr3:98525227-98538878 Sample_02_1429 Blood GM12878_WT 688 1 342 30 3 56 175 GPR15,OR5K2,CLDND1
SE_02_078300038 chr3:98525272-98574343 Sample_02_0783 Blood MEC2 38 15 1270 103 7 132 175 GPR15,OR5K2,CLDND1,CPOX
SE_02_104500417 chr3:98525445-98567037 Sample_02_1045 Peripheral blood CD4+ CD7- cells_CTCL992 417 16 1083 85 6 121 175 GPR15,OR5K2,CLDND1,CPOX
SE_02_138600061 chr3:98526790-98563630 Sample_02_1386 Peripheral blood Karpas-299_ALK+ 61 10 967 73 5 107 175 GPR15,OR5K2,CLDND1,CPOX
SE_02_042600242 chr3:98532820-98548575 Sample_02_0426 Colon HCT116_NONT 242 1 406 29 1 42 53 GPR15,OR5K2,CLDND1,CPOX
SE_02_042700345 chr3:98533533-98547067 Sample_02_0427 Colon HCT116_shPAF1 345 1 344 24 0 31 0 OR5K2,GPR15,CLDND1,CPOX
SE_02_014100038 chr3:98533935-98586786 Sample_02_0141 Colon HCT116_Heterozygous_ARID1A-KO 38 8 1415 121 6 117 224 CPOX,OR5K2,GPR15,CLDND1
SE_02_000900397 chr3:98534319-98563469 Sample_02_0009 Kidney 786-O_wtVHL 397 11 740 53 2 72 0 OR5K2,GPR15,CLDND1,CPOX
SE_02_124700026 chr3:98535244-98586326 Sample_02_1247 Colon HCT116_IFN-beta_1h 26 11 1375 120 6 112 224 CPOX,OR5K2,GPR15,CLDND1
SE_01_003400328 chr3:98535689-98547097 Sample_01_0034 Colon HCT116 328 1 297 21 0 22 0 OR5K2,GPR15,CLDND1,CPOX
SE_02_014300053 chr3:98535739-98566785 Sample_02_0143 Colon HCT116_Parental 53 3 812 61 3 78 0 OR5K2,GPR15,CLDND1,CPOX
SE_02_045800038 chr3:98536043-98586495 Sample_02_0458 Colon HCT116 DMSO 38 18 1363 117 6 112 224 CPOX,OR5K2,GPR15,CLDND1
SE_02_059800032 chr3:98536047-98565438 Sample_02_0598 Colon HCT116 TP53-/-_Nutlin3A 32 14 756 55 2 77 0 OR5K2,GPR15,CLDND1,CPOX
SE_01_011400074 chr3:98536200-98591928 Sample_01_0114 Colon HCT116_encode 74 27 1514 132 6 118 353 CPOX,OR5K2,GPR15,CLDND1
SE_02_105700270 chr3:98537927-98586065 Sample_02_1057 Esophagus GihTRT 270 8 1298 112 6 102 224 CPOX,OR5K2,GPR15,CLDND1
SE_02_105600267 chr3:98537927-98586220 Sample_02_1056 Esophagus ChTRT 267 12 1307 113 6 102 224 CPOX,OR5K2,GPR15,CLDND1
SE_02_048100156 chr3:98537971-98595966 Sample_02_0481 Mammary gland MDA-MB231 156 29 1586 134 6 129 624 CPOX,OR5K2,GPR15,CLDND1
SE_02_011600099 chr3:98538109-98594902 Sample_02_0116 Mammary gland MDA-MB-231_untreat 99 6 1555 132 6 127 624 CPOX,OR5K2,GPR15,CLDND1
SE_02_122800218 chr3:98538288-98585901 Sample_02_1228 Mammary gland MDA-MB-231_2 218 12 1280 109 6 102 224 CPOX,OR5K2,GPR15,CLDND1
SE_02_132300055 chr3:98538439-98594593 Sample_02_1323 Colon DLD1_WT 55 7 1541 132 6 125 624 CPOX,OR5K2,GPR15,CLDND1
SE_02_018000760 chr3:98538711-98586008 Sample_02_0180 melanoma CJM 760 9 1279 110 6 99 224 CPOX,OR5K2,GPR15,CLDND1
SE_02_135200328 chr3:98538826-98585849 Sample_02_1352 Mammary gland MDA-MB-231-Erbeta_E2 328 10 1267 108 6 99 224 CPOX,OR5K2,GPR15,CLDND1
SE_02_153800267 chr3:98538872-98591885 Sample_02_1538 Mammary gland MDA-MB-231 267 10 1449 126 6 108 353 CPOX,OR5K2,GPR15,CLDND1
SE_02_135400433 chr3:98538935-98586028 Sample_02_1354 Mammary gland MDA-MB-231-Erbeta_E2_TNFa 433 8 1277 109 6 99 224 CPOX,OR5K2,GPR15,CLDND1
SE_02_053100161 chr3:98539116-98585042 Sample_02_0531 Mammary gland MDA-MB-231 161 13 1238 106 6 92 167 CPOX,OR5K2,GPR15,CLDND1
SE_01_004200115 chr3:98539827-98565814 Sample_01_0042 Haematopoietic and lymphoid tissue KMS-11 115 4 681 52 2 63 0 OR5K2,GPR15,CLDND1,CPOX
SE_00_004400395 chr3:98539859-98569326 Sample_00_0044 Cord blood T-cell 395 3 766 57 4 70 0 OR5K2,GPR15,CLDND1,CPOX
SE_02_135300210 chr3:98540611-98585792 Sample_02_1353 Mammary gland MDA-MB-231-Erbeta_TNFa 210 8 1220 106 6 93 220 CPOX,OR5K2,GPR15,CLDND1
SE_02_135100168 chr3:98541857-98577671 Sample_02_1351 Mammary gland MDA-MB-231-Erbeta_vehicle 168 5 953 78 5 70 0 OR5K2,GPR15,CLDND1,CPOX
SE_02_115600478 chr3:98542598-98568012 Sample_02_1156 Peripheral blood Day6 Plasmablast CD23- memory B cell 478 16 665 52 4 61 0 OR5K2,GPR15,CLDND1,CPOX
SE_02_142900080 chr3:98543591-98566574 Sample_02_1429 Blood GM12878_WT 80 1 617 50 3 55 0 OR5K2,GPR15,CLDND1,CPOX
SE_02_062200417 chr3:98544345-98560915 Sample_02_0622 Blood EOL1_Naive 417 7 443 26 2 46 0 OR5K2,GPR15,CLDND1,CPOX
SE_02_083601011 chr3:98544837-98573596 Sample_02_0836 Bone marrow TEX-HIST1H3H-WT-Rx_cells 1011 6 750 62 4 67 0 OR5K2,GPR15,CLDND1,CPOX
SE_02_111900522 chr3:98546055-98598760 Sample_02_1119 Blood KBM7 522 16 1441 127 6 121 624 CPOX,OR5K2,GPR15,CLDND1
SE_02_042700073 chr3:98550835-98568311 Sample_02_0427 Colon HCT116_shPAF1 73 1 438 36 3 54 0 GPR15,CLDND1,CPOX
SE_02_042600066 chr3:98550869-98568829 Sample_02_0426 Colon HCT116_NONT 66 1 453 37 3 55 0 GPR15,CLDND1,CPOX
SE_01_003400114 chr3:98550971-98559446 Sample_01_0034 Colon HCT116 114 1 220 12 1 36 0 GPR15,CLDND1,CPOX
SE_02_084600289 chr3:98551189-98584991 Sample_02_0846 Mammary gland MDA-MB-231_untreat 289 17 907 85 5 76 167 CPOX,GPR15,CLDND1
SE_00_000800625 chr3:98551194-98569040 Sample_00_0008 Blood CD4-positive-alpha-beta-memory-T-cell 625 2 452 37 3 55 0 GPR15,CLDND1,CPOX
SE_02_146001053 chr3:98551208-98566291 Sample_02_1460 Blood Mutz-3 1053 3 392 34 2 48 0 GPR15,CLDND1,CPOX
SE_02_146800157 chr3:98551478-98602149 Sample_02_1468 Blood HUDEP-2_WT 157 7 1380 128 5 114 624 CPOX,GPR15,CLDND1
SE_02_059900068 chr3:98551485-98559663 Sample_02_0599 Colon HCT116_DMSO 68 1 214 13 1 36 0 GPR15,CLDND1,CPOX
SE_02_014200075 chr3:98551505-98559171 Sample_02_0142 Colon HCT116_Homozygous_ARID1A-KO 75 1 196 12 1 34 0 GPR15,CLDND1,CPOX
SE_02_093900281 chr3:98552372-98565662 Sample_02_0939 Mammary gland MDA-MB-231_control 281 4 338 31 1 42 0 GPR15,CLDND1,CPOX
SE_02_099000371 chr3:98552445-98577581 Sample_02_0990 Breast cancer brain metastatic variant MDA-MB-231 BrM2 371 11 653 58 3 57 0 GPR15,CLDND1,CPOX
SE_02_020600173 chr3:98552469-98573044 Sample_02_0206 Stomach Gastric_Primary_Sample_N 173 9 531 49 3 54 0 GPR15,CLDND1,CPOX
SE_02_015100277 chr3:98552656-98594717 Sample_02_0151 Mammary gland MDA-MB-231_TA1del 277 6 1165 109 5 102 624 CPOX,GPR15,CLDND1
SE_02_099200425 chr3:98553066-98586202 Sample_02_0992 Mammary gland MDA-MB-231_Par 425 7 905 89 5 77 224 CPOX,GPR15,CLDND1
SE_02_150900154 chr3:98554604-98573235 Sample_02_1509 Lung H3122_LR 154 6 472 44 2 43 0 GPR15,CLDND1,CPOX
SE_02_047000021 chr3:98554664-98562270 Sample_02_0470 Blood GM12878 21 3 181 12 0 23 0 GPR15,CLDND1,CPOX
SE_02_099100665 chr3:98555082-98587131 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 665 10 880 85 4 65 224 CPOX,GPR15,CLDND1
SE_00_004700526 chr3:98555187-98568232 Sample_00_0047 Blood effector memory CD4+ alpha-beta T cell 526 4 313 27 2 35 0 GPR15,CLDND1,CPOX
SE_02_146700106 chr3:98572011-98602875 Sample_02_1467 Blood HUDEP-2_LRFKO 106 2 889 83 2 60 624 CPOX,GPR15,CLDND1
SE_02_032400065 chr3:98572507-98597241 Sample_02_0324 Colon SW48 65 1 714 68 2 58 624 CPOX,GPR15,CLDND1
SE_02_001600247 chr3:98572737-98598090 Sample_02_0016 Blood erythroblasts 247 3 732 69 2 53 624 CPOX,GPR15,CLDND1
Genomic distribution of SEs associated with CLDND1
Genome Browser

The strength of the tissue affected by the gene

Expression of CLDND1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)