Sample overview


Search result

SE ID SE Region Size Rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_060800038 chr1:125167777-125183855 16078 38 6 0 0 0 0 0
SE_02_060800037 chr1:143246809-143268666 21857 37 12 0 4 0 0 0 LOC645166,FCGR1C
SE_02_060800050 chr1:8070562-8099511 28949 50 14 710 41 2 83 0 ERRFI1
SE_02_060800023 chr1:84141528-84179357 37829 23 16 781 18 1 55 145 PRKACB
SE_02_060800046 chr10:112377822-112405849 28027 46 12 707 64 5 59 175 ACSL5,GUCY2GP,VTI1A,ZDHHC6
SE_02_060800007 chr10:112471591-112549689 78098 7 30 1899 17 2 320 102 VTI1A,ZDHHC6
SE_02_060800032 chr10:28089201-28141219 52018 32 21 1375 74 8 87 257 MPP7,ARMC4
SE_02_060800010 chr11:122132092-122200773 68681 10 36 1836 39 7 365 156 MIR100,MIRLET7A2,MIR100HG,MIR125B1,BLID
SE_02_060800040 chr12:37235256-37265621 30365 40 23 0 8 0 0 0
SE_02_060800036 chr12:65630298-65673937 43639 36 15 1212 44 0 146 0 LOC100507065
SE_02_060800052 chr12:65822012-65834457 12445 52 5 285 2 3 102 624 RPSAP52,HMGA2,LOC100129940
SE_02_060800034 chr12:75623137-75668159 45022 34 19 1248 123 4 133 0 KRR1
SE_02_060800022 chr12:75694768-75767947 73179 22 38 2052 65 5 155 0 KRR1
SE_02_060800011 chr12:88917179-88970425 53246 11 20 1202 28 4 170 0 LOC728084
SE_02_060800039 chr15:19775321-19789899 14578 39 11 0 6 0 0 0 CHEK2P2,HERC2P3
SE_02_060800044 chr16:38265879-38280555 14676 44 7 0 0 0 0 0
SE_02_060800035 chr16:69395643-69430223 34580 35 17 861 82 0 87 123 CYB5B,TERF2,TMED6
SE_02_060800031 chr17:59753327-59788330 35003 31 12 708 71 3 79 71 VMP1,PTRH2
SE_02_060800028 chr17:59828000-59847302 19302 28 10 426 31 0 88 208 MIR21,VMP1,RPS6KB1,TUBD1
SE_02_060800027 chr18:3594503-3630997 36494 27 18 995 56 5 53 678 DLGAP1,DLGAP1-AS2,DLGAP1-AS1
SE_02_060800026 chr2:181776971-181818514 41543 26 15 1139 20 0 119 0 SSFA2
SE_02_060800051 chr2:223523174-223564607 41433 51 15 1084 29 2 127 0 SCG2
SE_02_060800016 chr2:226113600-226191860 78260 16 29 2038 113 10 212 329 LOC646736
SE_02_060800030 chr2:226644725-226694039 49314 30 18 1486 13 0 190 48 MIR5702
SE_02_060800041 chr20:28494666-28498780 4114 41 5 0 1 0 0 0 FRG1CP
SE_02_060800025 chr3:111889084-111947832 58748 25 24 1502 156 4 129 710 PHLDB2,ABHD10
SE_02_060800001 chr3:93470360-93470805 445 1 1 0 0 0 0 0 PROS1
SE_02_060800018 chr3:98512800-98586674 73874 18 40 1941 153 10 213 936 GPR15,CPOX,CLDND1,OR5K2,OR5K1
SE_02_060800029 chr3:98953724-98986878 33154 29 18 789 108 0 82 0 DCBLD2
SE_02_060800015 chr4:101101004-101170085 69081 15 30 1742 69 7 187 31 PPP3CA,MIR8066
SE_02_060800043 chr4:11605429-11652022 46593 43 21 1456 55 3 122 0 HS3ST1
SE_02_060800045 chr4:186805358-186847212 41854 45 15 1052 95 2 122 0 FAT1
SE_02_060800003 chr4:30714704-30965333 250629 3 85 6934 209 12 1467 917 PCDH7
SE_02_060800013 chr4:31011787-31108342 96555 13 53 2843 0 7 379 0 PCDH7,LOC102723778
SE_02_060800004 chr4:49708175-49711981 3806 4 3 0 0 0 0 0 CWH43,OCIAD2
SE_02_060800014 chr4:74618918-74671172 52254 14 28 1562 15 3 70 0 BTC
SE_02_060800042 chr7:116672836-116710344 37508 42 15 950 62 4 239 192 MET
SE_02_060800021 chr7:130885539-130945232 59693 21 36 1645 109 6 198 199 LINC-PINT,LOC100506860,MIR29A,MIR29B1
SE_02_060800033 chr7:130959045-131016708 57663 33 20 1506 69 5 88 90 LINC-PINT,LOC100506860
SE_02_060800047 chr7:80271763-80282213 10450 47 3 248 9 1 36 0 LOC101927269
SE_02_060800049 chr8:125111196-125154379 43183 49 22 1098 48 1 140 31 NSMCE2,KIAA0196
SE_02_060800024 chr8:127204596-127232639 28043 24 17 781 5 2 110 419 CCAT1,CASC21,CASC19
SE_02_060800019 chr8:43237619-43242022 4403 19 5 263 10 0 0 0 POTEA,HGSNAT
SE_02_060800008 chr8:93819369-93921393 102024 8 38 2885 153 8 220 377 PDP1,MIR378D2
SE_02_060800012 chr9:21546447-21597269 50822 12 20 1456 23 9 126 166 MIR31HG,MIR31
SE_02_060800020 chr9:21668995-21694150 25155 20 11 966 54 11 72 0 MTAP
SE_02_060800006 chr9:60552874-60688426 135552 6 99 0 0 0 0 0 SPATA31A5
SE_02_060800009 chrUn_KI270333v1:0-2699 2699 9 3 0 0 0 0 0
SE_02_060800048 chrUn_KI270336v1:0-1026 1026 48 1 0 0 0 0 0
SE_02_060800017 chrUn_KI270337v1:0-1105 1105 17 1 0 0 0 0 0
SE_02_060800005 chrUn_KI270466v1:0-1233 1233 5 1 0 0 0 0 0
SE_02_060800002 chrUn_KI270467v1:783-3920 3137 2 1 0 0 0 0 0

SE annotation visualization


Information description of sample and annotation

Case ID: Name:GSM3020154
Input ID: Name:GSM3020146
Common SNP: dbSNP
eQTL: GTEx, HaploReg v4.1, PancanQTL
Risk SNP : GWAS Catalog, GWASdb v2.0
TFBS: TFBS Conserved of UCSC
CRISPR/Cas9 target site: CRISPR Targets of UCSC

Software and parameters used

Read Mapping: bowtie(v2.4.4) -p 10 -x -S -U
Peak Calling: macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb