Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000256025
Gene: CACNA1C-AS4 Gene type: lncRNA
Strand: - External links:
Genomic region: chr12:2219485-2223479 Genome Browser:

Super-enhancer search result of gene-based

SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_053300046 chr12:2027344-2195180 Sample_02_0533 Blood vessel Circle of Willis_54y 46 63 4872 120 21 443 396 CACNA1C,CACNA1C-IT2,CACNA1C-AS4,DCP1B
SE_01_009300075 chr12:2052949-2198698 Sample_01_0093 Aorta ascending aorta 75 46 4292 107 25 368 396 CACNA1C,CACNA1C-AS4,DCP1B,CACNA1C-IT2
SE_01_011000061 chr12:2052991-2194873 Sample_01_0110 Aorta thoracic aorta_37y 61 63 4184 104 21 345 396 CACNA1C,CACNA1C-AS4,DCP1B,CACNA1C-IT2
SE_02_089000056 chr12:2053628-2198352 Sample_02_0890 Heart left ventricle_LV1200 56 40 4265 107 25 352 268 CACNA1C,CACNA1C-AS4,DCP1B,CACNA1C-IT2
SE_02_091300109 chr12:2054160-2199761 Sample_02_0913 Heart left ventricle_DCM_LV1304 109 64 4300 107 25 350 207 CACNA1C,CACNA1C-AS4,DCP1B,CACNA1C-IT2
SE_02_088700047 chr12:2054424-2198773 Sample_02_0887 Heart left ventricle_LV1121 47 58 4270 107 25 346 207 CACNA1C,CACNA1C-AS4,DCP1B,CACNA1C-IT2
SE_02_089700058 chr12:2055426-2198909 Sample_02_0897 Heart left ventricle_LV1325 58 65 4250 106 25 338 207 CACNA1C,CACNA1C-AS4,CACNA1C-IT2
SE_02_091900044 chr12:2055552-2199329 Sample_02_0919 Heart left ventricle_DCM_LV1532 44 51 4257 106 25 338 207 CACNA1C,CACNA1C-AS4,CACNA1C-IT2
SE_02_090000087 chr12:2055693-2198882 Sample_02_0900 Heart left ventricle_LV1452 87 58 4242 106 25 337 207 CACNA1C,CACNA1C-AS4,CACNA1C-IT2
SE_00_005700023 chr12:2055780-2199344 Sample_00_0057 Heart right ventricle 3y 23 110 4251 105 25 336 207 CACNA1C,CACNA1C-AS4,CACNA1C-IT2
SE_02_090600349 chr12:2108659-2198763 Sample_02_0906 Heart left ventricle_DCM_LV1072 349 27 2617 57 16 219 207 CACNA1C,CACNA1C-AS4
SE_02_091700151 chr12:2109143-2198631 Sample_02_0917 Heart left ventricle_DCM_LV1433 151 31 2587 57 16 219 207 CACNA1C,CACNA1C-AS4
SE_02_044200380 chr12:2119204-2181557 Sample_02_0442 Bone MG63.3 380 32 1733 27 4 139 63 CACNA1C,CACNA1C-AS4
SE_02_114500553 chr12:2136923-2197356 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 553 25 1769 27 13 119 0 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_091800324 chr12:2137031-2199189 Sample_02_0918 Heart left ventricle_DCM_LV1437 324 20 1831 29 15 135 0 CACNA1C,CACNA1C-AS4
SE_02_089400486 chr12:2137453-2181542 Sample_02_0894 Heart left ventricle_LV1248 486 13 1257 13 4 94 0 CACNA1C,CACNA1C-AS4
SE_02_089900351 chr12:2137959-2199800 Sample_02_0899 Heart left ventricle_LV1400 351 22 1806 28 15 133 0 CACNA1C,CACNA1C-AS4
SE_02_077600729 chr12:2138638-2177372 Sample_02_0776 Pancreas EndoC-BH1 729 6 1083 4 3 81 0 CACNA1C,CACNA1C-AS4
SE_02_091600354 chr12:2141777-2198827 Sample_02_0916 Heart left ventricle_DCM_LV1392 354 21 1677 28 15 132 0 CACNA1C,CACNA1C-AS4
SE_02_155300825 chr12:2145670-2195411 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 825 17 1489 25 12 114 0 CACNA1C,CACNA1C-AS4
SE_02_044400261 chr12:2149133-2198811 Sample_02_0444 Bone osteosarcoma tumor P10 261 13 1501 28 15 127 0 CACNA1C,CACNA1C-AS4
SE_02_092000461 chr12:2149164-2198938 Sample_02_0920 Heart left ventricle_DCM_LV1535 461 19 1506 28 15 128 0 CACNA1C,CACNA1C-AS4
SE_02_089500542 chr12:2149357-2181392 Sample_02_0895 Heart left ventricle_LV1259 542 15 945 13 4 86 0 CACNA1C,CACNA1C-AS4
SE_02_053400521 chr12:2149410-2193956 Sample_02_0534 Blood vessel Circle of Willis_60y 521 14 1350 25 11 100 0 CACNA1C,CACNA1C-AS4
SE_02_090900726 chr12:2149549-2198848 Sample_02_0909 Heart left ventricle_DCM_LV1264 726 18 1487 28 15 124 0 CACNA1C,CACNA1C-AS4
SE_02_091501112 chr12:2152707-2196094 Sample_02_0915 Heart left ventricle_DCM_LV1371 1112 15 1335 25 12 96 0 CACNA1C,CACNA1C-AS4
SE_02_120501093 chr12:2153591-2216962 Sample_02_1205 Brain NB3 1093 27 1912 71 39 149 0 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_077501876 chr12:2159135-2189038 Sample_02_0775 Pancreas EndoC-BH1_SE 1876 9 902 20 6 82 0 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_067800375 chr12:2187622-2199313 Sample_02_0678 Embryo H1 hESC-derived neural progenitor cells_Smad_12hr 375 5 371 12 10 33 0 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_044400033 chr12:2226274-2314069 Sample_02_0444 Bone osteosarcoma tumor P10 33 33 2610 145 25 179 246 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_056900013 chr12:2228997-2359299 Sample_02_0569 Periodontal ligament mesenchymal stem cell 13 61 3974 199 32 285 246 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_114500040 chr12:2229690-2400950 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 40 67 5087 218 37 384 246 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_044500279 chr12:2230297-2313442 Sample_02_0445 Lung lung metastasis from primary osteosarcoma tumor M10 279 25 2454 134 25 178 246 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_086900075 chr12:2230411-2342064 Sample_02_0869 Fibroblast VH10_NO_UV 75 39 3335 179 27 236 246 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_063700029 chr12:2231102-2342298 Sample_02_0637 Fibroblast fibroblast_WT_GM07492 29 38 3325 179 27 236 246 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_119900042 chr12:2231502-2365069 Sample_02_1199 Brain GBM35 42 30 4060 196 32 298 246 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_088000722 chr12:2231517-2269639 Sample_02_0880 Ovary SVOG3e cells_noDox_transduced_V5-FOXL2_WT 722 6 1138 72 17 84 5 CACNA1C,CACNA1C-AS4,CACNA1C-IT3,DCP1B
SE_02_060600022 chr12:2231522-2342852 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 22 30 3329 179 27 236 246 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_158400186 chr12:2231546-2302167 Sample_02_1584 Brain U87 GBM_Mock 186 17 2084 124 21 135 246 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_156600095 chr12:2231606-2342547 Sample_02_1566 Dermal Dermal fibroblast 95 32 3321 179 27 236 246 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_061600050 chr12:2231645-2360662 Sample_02_0616 Liposarcoma liposarcoma cells_LP6 50 47 3927 193 32 296 246 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_131000167 chr12:2231729-2345266 Sample_02_1310 Bone marrow ASMSCs 167 16 3405 179 29 248 246 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_141600082 chr12:2232366-2359232 Sample_02_1416 Brain SF9402 82 22 3868 192 32 285 246 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_127900688 chr12:2232767-2288702 Sample_02_1279 Bone Mesenchymal stem cells 688 10 1649 112 20 112 216 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_137700591 chr12:2232840-2267893 Sample_02_1377 Pancreas Pancreatic_tumor_associated_fibroblasts_BF1_untreated 591 11 1064 68 17 75 0 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_063600324 chr12:2232864-2270197 Sample_02_0636 Skin BJ5ta 324 9 1123 70 17 84 107 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_060900455 chr12:2232888-2271096 Sample_02_0609 Liposarcoma LPS141 455 12 1153 71 17 85 107 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_045100064 chr12:2232932-2287781 Sample_02_0451 Skin in vitro transformedskin fibroblasts_tumourigenic 64 13 1626 110 20 112 107 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_086700035 chr12:2232959-2360525 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 35 64 3891 192 32 296 246 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_157100992 chr12:2233454-2269840 Sample_02_1571 Fibroblast Fibroblast cells 992 8 1097 70 16 84 40 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_089000742 chr12:2236637-2265454 Sample_02_0890 Heart left ventricle_LV1200 742 10 875 52 12 52 0 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_091900994 chr12:2236669-2265037 Sample_02_0919 Heart left ventricle_DCM_LV1532 994 13 866 51 12 40 0 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_130300677 chr12:2238508-2260974 Sample_02_1303 Lymphoma RL_tazemetostat 677 5 693 45 9 19 0 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_104600508 chr12:2239213-2377112 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 508 49 4154 194 27 306 246 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_064200489 chr12:2240501-2267718 Sample_02_0642 Mammary gland MDA-MB-436_20C paclitaxel 489 10 829 57 8 42 0 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_076200858 chr12:2241957-2295211 Sample_02_0762 Podocyte podocyte_CTL 858 12 1587 104 10 86 246 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_076301093 chr12:2242709-2270328 Sample_02_0763 Podocyte podocyte_DEX 1093 4 826 55 7 50 107 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_050000285 chr12:2242847-2287891 Sample_02_0500 Fetal lung IMR90_#2 285 22 1329 95 10 78 111 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_045200097 chr12:2242870-2311818 Sample_02_0452 Skin hTERT immortalised human skin fibroblasts_Non-tumourigenic 97 13 2049 117 15 142 246 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_060500025 chr12:2242917-2341949 Sample_02_0605 Skin Skin Fibroblast_DMSO 25 22 2964 162 17 202 246 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_087900514 chr12:2243171-2270032 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 514 4 806 55 7 50 73 CACNA1C-IT3,CACNA1C,CACNA1C-AS4,DCP1B
SE_02_137600581 chr12:2243173-2267689 Sample_02_1376 Pancreas Pancreatic_tumor_associated_fibroblasts_B011C_untreated 581 11 747 53 7 41 0 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_099800423 chr12:2243179-2260752 Sample_02_0998 Lymphoma OCI-LY1_DMSO 423 10 544 38 6 18 0 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_088300515 chr12:2243185-2270072 Sample_02_0883 Ovary SVOG3e_cells_Dox_12h_transduced with V5-FOXL2 C134W 515 4 808 55 7 50 84 CACNA1C-IT3,CACNA1C,CACNA1C-AS4,DCP1B
SE_02_142700042 chr12:2243193-2360127 Sample_02_1427 Shoulder fibroblast_343 42 31 3575 177 22 262 246 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_044600210 chr12:2243206-2359914 Sample_02_0446 Bone osteosarcoma tumor P2 210 34 3564 177 22 262 246 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_044300467 chr12:2243279-2306470 Sample_02_0443 Bone MG63 467 20 1874 110 12 118 246 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_088200530 chr12:2243334-2270129 Sample_02_0882 Ovary SVOG3e_cells_noDox_transduced with V5-FOXL2 C134W 530 4 807 55 7 50 104 CACNA1C-IT3,CACNA1C,CACNA1C-AS4,DCP1B
SE_02_088100586 chr12:2243335-2270072 Sample_02_0881 Ovary SVOG3e cells_Dox_12h_transduced_V5-FOXL2_WT 586 5 806 55 7 50 84 CACNA1C-IT3,CACNA1C,CACNA1C-AS4,DCP1B
SE_02_087800566 chr12:2243340-2269943 Sample_02_0878 Ovary SVOG3e cells_noDox_control 566 4 802 55 7 50 61 CACNA1C-IT3,CACNA1C,CACNA1C-AS4,DCP1B
SE_02_137400785 chr12:2243375-2267935 Sample_02_1374 Pancreas Pancreatic_tumor_associated_fibroblasts_B009B_untreated 785 16 750 53 7 41 0 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_143801120 chr12:2243403-2269067 Sample_02_1438 Liver LSEC 1120 11 779 54 7 48 0 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_158300422 chr12:2243412-2267709 Sample_02_1583 Fetal lung IMR90_empty_GM 422 11 743 53 7 41 0 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_049900292 chr12:2243425-2349090 Sample_02_0499 Fetal lung IMR90 IR Senescence 292 36 3204 169 20 217 246 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_072700701 chr12:2243540-2269796 Sample_02_0727 Fetal lung IMR90_Etoposide 701 6 796 55 7 50 29 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_049800283 chr12:2243593-2267638 Sample_02_0498 Fetal lung IMR90 Senescent_1 283 18 739 52 7 41 0 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_137500516 chr12:2243594-2267529 Sample_02_1375 Pancreas Pancreatic_tumor_associated_fibroblasts_B0010A_untreated 516 10 737 52 7 39 0 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_126500738 chr12:2243596-2270244 Sample_02_1265 Bone Im-GCT-4072_G34W-repair_WT_D6 738 6 807 55 7 50 107 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_087600498 chr12:2243647-2259674 Sample_02_0876 Muscle SMS-CTR_CASZ1b_Ctrl 498 8 511 37 6 18 0 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_143601141 chr12:2243686-2269026 Sample_02_1436 Liver LSEC-Ctrl 1141 12 775 54 7 48 0 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_084900307 chr12:2243698-2269108 Sample_02_0849 iPSCs iPSC_CBP-30 307 5 776 55 7 48 0 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_126600420 chr12:2243720-2270066 Sample_02_1266 Bone Im-GCT-4072_G34W-repair_WT_E3 420 5 799 55 7 50 84 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_113400501 chr12:2243741-2267834 Sample_02_1134 Bone U2OS-interphase 501 7 741 53 7 41 0 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_111300580 chr12:2243755-2269894 Sample_02_1113 Bone U2OS 580 8 793 55 7 50 55 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_126401467 chr12:2243769-2269888 Sample_02_1264 Bone Im-GCT-4072_G34W KO 1467 5 793 55 7 50 54 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_135500611 chr12:2243802-2269909 Sample_02_1355 Umbilical cord umbilical cord-derived mesenchymal stem cells_old 611 4 792 55 7 50 57 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_061500475 chr12:2243835-2269815 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 475 6 789 55 7 50 33 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_088600400 chr12:2243889-2359178 Sample_02_0886 Skin foreskin_ p63KLF4 400 23 3533 177 22 251 246 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_131100366 chr12:2243905-2311741 Sample_02_1311 Bone marrow HDMSCs 366 10 2030 117 15 137 246 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_137900908 chr12:2243927-2267596 Sample_02_1379 Pancreas Pancreatic_tumor_associated_fibroblasts_PS1_untreated 908 6 732 52 7 41 0 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_094100515 chr12:2243933-2265324 Sample_02_0941 Brain T98G 515 7 665 43 7 35 0 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_126900730 chr12:2243971-2269651 Sample_02_1269 Bone Im-GCT-4072_G34W-repair_WT_A4 730 5 783 55 7 50 8 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_084800152 chr12:2243988-2269084 Sample_02_0848 iPSCs iPSC_DMSO 152 6 769 55 7 48 0 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_046600546 chr12:2244048-2344910 Sample_02_0466 Adipose visceral adipocytes 546 37 3039 164 19 212 246 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_114900261 chr12:2244067-2270220 Sample_02_1149 Kidney WT 9-12_control_Nrf2_SFN 261 5 797 55 7 50 107 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_086800060 chr12:2244107-2342946 Sample_02_0868 Bone marrow Bone marrow derived hMSC_d10 60 38 2975 162 17 202 246 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_132800465 chr12:2256653-2285257 Sample_02_1328 Non-mineralized aortic valves aortic valve interstitial cells 465 7 833 58 5 52 107 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_139900544 chr12:2257331-2272152 Sample_02_1399 Bone U2OS_siMLL3.1 544 4 427 24 2 33 107 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_139800797 chr12:2257476-2267518 Sample_02_1398 Bone U2OS_siNC 797 4 292 19 2 21 0 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_047401330 chr12:2258525-2270029 Sample_02_0474 Fibroblast umbilical cord Fibroblast 1330 2 324 20 2 32 73 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_053400017 chr12:2259027-2396901 Sample_02_0534 Blood vessel Circle of Willis_60y 17 60 4086 162 22 332 246 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_142800060 chr12:2259099-2360170 Sample_02_1428 Shoulder fibroblast_316 60 30 3078 142 17 244 246 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_01_009300193 chr12:2261904-2359947 Sample_01_0093 Aorta ascending aorta 193 31 2984 137 16 241 246 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_142600276 chr12:2263039-2320317 Sample_02_1426 Shoulder fibroblast_341 276 29 1712 86 9 129 246 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_135600931 chr12:2263598-2269663 Sample_02_1356 Umbilical cord umbilical cord-derived mesenchymal stem cells_Young 931 1 174 15 1 25 8 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_01_011000138 chr12:2263772-2360001 Sample_01_0110 Aorta thoracic aorta_37y 138 40 2943 136 16 237 246 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_081600799 chr12:2263946-2360628 Sample_02_0816 Ovary Clear cell ovarian cancer 799 25 2956 136 16 237 246 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_142500388 chr12:2264034-2311769 Sample_02_1425 Shoulder fibroblast_384 388 16 1409 76 9 114 246 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_118600910 chr12:2264246-2302753 Sample_02_1186 Brain GBM15 910 9 1118 66 5 83 246 CACNA1C-IT3,CACNA1C,CACNA1C-AS4

Genomic distribution of SEs associated with CACNA1C-AS4

The strength of the tissue affected by the gene


Expression of CACNA1C-AS4