SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000101417
Gene: PXMP4 Gene type: protein_coding
Strand: - External links:
Genomic region: chr20:33702758-33720319 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_077500743 chr20:33683239-33724223 Sample_02_0775 Pancreas EndoC-BH1_SE 743 12 1040 76 4 138 1335 E2F1,PXMP4,ACTL10,NECAB3,C20ORF144,ZNF341
SE_02_106400701 chr20:33684297-33703902 Sample_02_1064 Brain CLB-GA-Dinaciclib_8h 701 4 494 32 1 99 461 E2F1,PXMP4,ACTL10,NECAB3,C20ORF144,ZNF341
SE_02_121301087 chr20:33686298-33703510 Sample_02_1213 Brain GBM31 1087 7 446 27 0 58 216 E2F1,PXMP4,ACTL10,NECAB3,C20ORF144,ZNF341
SE_02_146400148 chr20:33698627-33748549 Sample_02_1464 Ovary CAOV4 148 13 1352 102 4 80 1419 PXMP4,ZNF341,ACTL10,E2F1,NECAB3,C20ORF144
SE_02_040400062 chr20:33702766-33735495 Sample_02_0404 Mammary gland ZR-75-1_2 62 9 836 59 3 68 1199 ZNF341,PXMP4,NECAB3,E2F1,C20ORF144,C20ORF134
SE_02_125300520 chr20:33703174-33735910 Sample_02_1253 Mammary gland CAMA1 ER+/FGFR1-amplified 520 16 836 59 3 62 1139 PXMP4,ZNF341,ACTL10,E2F1,NECAB3,C20ORF144
SE_02_153900287 chr20:33703520-33745520 Sample_02_1539 Nasopharyngeal C666-1 287 12 1098 79 4 74 1274 PXMP4,ZNF341,ACTL10,E2F1,NECAB3,C20ORF144
SE_02_154100537 chr20:33707273-33745506 Sample_02_1541 Nasopharyngeal HNE1 537 8 975 69 4 70 744 PXMP4,ZNF341,ACTL10,E2F1,NECAB3,C20ORF144
SE_04_000101186 chr20:33707486-33744994 Sample_04_0001 Blood heat shocked K562 1186 5 952 68 3 61 631 PXMP4,ZNF341,ACTL10,E2F1,NECAB3,C20ORF144,CHMP4B
SE_02_109000156 chr20:33709405-33735486 Sample_02_1090 Mammary gland T47D_shCtrl_8hr 156 5 648 45 1 43 429 PXMP4,ZNF341,ACTL10,E2F1,NECAB3,C20ORF144
SE_02_104901229 chr20:33709961-33741146 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1229 11 791 56 1 46 508 PXMP4,ZNF341,ACTL10,E2F1,NECAB3,C20ORF144
SE_02_103200222 chr20:33710077-33751862 Sample_02_1032 Head and neck SCC1 JQ1 222 15 1092 80 2 70 708 PXMP4,ZNF341,ACTL10,E2F1,NECAB3,C20ORF144
SE_02_076500359 chr20:33710760-33735242 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 359 6 606 41 1 39 337 PXMP4,ZNF341,ACTL10,E2F1,NECAB3,C20ORF144
SE_02_146500336 chr20:33713237-33735717 Sample_02_1465 Ovary CAOV4cis 336 5 561 30 1 39 301 PXMP4,ZNF341,E2F1,NECAB3,ACTL10
SE_02_074900539 chr20:33713444-33735380 Sample_02_0749 Mammary gland HCC1599_GSI 539 5 547 29 1 39 301 PXMP4,ZNF341,E2F1,NECAB3,ACTL10
SE_02_108700093 chr20:33713924-33735507 Sample_02_1087 Mammary gland T47D_shCtrl_shRING1B_0 93 9 540 29 1 39 301 PXMP4,ZNF341,E2F1,NECAB3,ACTL10
SE_02_074800509 chr20:33714043-33735468 Sample_02_0748 Mammary gland HCC1599_WO 509 3 537 29 1 39 301 PXMP4,ZNF341,E2F1,NECAB3,ACTL10
SE_02_108600080 chr20:33715258-33735633 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 80 6 508 26 1 30 239 PXMP4,ZNF341,E2F1,NECAB3,ACTL10
SE_02_108800139 chr20:33715434-33735360 Sample_02_1088 Mammary gland T47D_shCtrl_45min 139 6 498 26 1 30 239 PXMP4,ZNF341,E2F1,NECAB3,ACTL10
SE_02_109300226 chr20:33715524-33735343 Sample_02_1093 Mammary gland T47D_shCtrl_shRING1B_24hr 226 7 496 26 1 30 239 PXMP4,ZNF341,E2F1,NECAB3,ACTL10
SE_02_040300230 chr20:33715999-33735804 Sample_02_0403 Mammary gland T-47D_untreat 230 4 496 25 1 30 239 ZNF341,PXMP4,NECAB3,E2F1,C20ORF134
SE_02_108900130 chr20:33716197-33735532 Sample_02_1089 Mammary gland T47D_shCtrl_shRING1B_45min 130 6 482 25 1 30 239 PXMP4,ZNF341,E2F1,NECAB3,ACTL10
SE_02_007900174 chr20:33716223-33735935 Sample_02_0079 Mammary gland T-47D_1 174 4 496 25 1 30 239 ZNF341,PXMP4,NECAB3,E2F1,C20ORF134
SE_02_109200214 chr20:33716287-33735273 Sample_02_1092 Mammary gland T47D_shCtrl_24hr 214 4 471 25 1 30 239 PXMP4,ZNF341,E2F1,NECAB3,ACTL10
SE_02_123400299 chr20:33716313-33735592 Sample_02_1234 Mammary gland T47D_Full 299 4 482 25 1 30 239 PXMP4,ZNF341,E2F1,NECAB3,ACTL10
SE_02_080900186 chr20:33716610-33736474 Sample_02_0809 Mammary gland T47D Serum 186 5 506 24 1 30 239 PXMP4,ZNF341,E2F1,NECAB3
SE_02_109100143 chr20:33717009-33735151 Sample_02_1091 Mammary gland T47D_shCtrl_shRING1B_8hr 143 4 453 21 0 30 239 PXMP4,ZNF341,E2F1,NECAB3
SE_02_062400302 chr20:33717782-33735627 Sample_02_0624 Mammary gland TAMR_VEH 302 4 460 22 0 30 239 PXMP4,ZNF341,E2F1,NECAB3
SE_02_053200313 chr20:33717855-33735560 Sample_02_0532 Mammary gland T47D 313 3 456 22 0 30 239 PXMP4,ZNF341,E2F1,NECAB3
SE_02_062300366 chr20:33717932-33735450 Sample_02_0623 Mammary gland TAMR_E2 366 4 449 22 0 30 239 PXMP4,ZNF341,E2F1,NECAB3
SE_02_081000205 chr20:33718160-33735659 Sample_02_0810 Mammary gland T47D noSerum 205 4 453 21 0 30 239 PXMP4,ZNF341,E2F1,NECAB3
Genomic distribution of SEs associated with PXMP4
Genome Browser

The strength of the tissue affected by the gene

Expression of PXMP4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)