SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000180370
Gene: PAK2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr3:196739857-196832647 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_103600273 chr3:196714156-196836801 Sample_02_1036 Mammary gland HCC70_XY018 273 52 3960 364 6 166 1555 RNU6-42P,PIGX,PAK2,CEP19,SENP5
SE_02_103500503 chr3:196714162-196773876 Sample_02_1035 Mammary gland HCC70_Vehicle 503 14 1825 204 3 66 692 PIGX,PAK2,CEP19,RNU6-42P
SE_02_023401060 chr3:196726306-196804625 Sample_02_0234 Tonsil Th17 1060 12 2443 246 3 72 762 PIGX,PAK2,C3ORF34
SE_02_137200586 chr3:196727024-196741879 Sample_02_1372 Pancreas PSN1-untreated 586 2 413 43 1 37 585 PIGX,PAK2,CEP19,RNU6-42P
SE_02_092901116 chr3:196735497-196754683 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 1116 6 581 89 1 25 262 PIGX,PAK2,CEP19,RNU6-42P
SE_02_040300026 chr3:196739000-196808947 Sample_02_0403 Mammary gland T-47D_untreat 26 7 2247 224 3 70 427 PAK2,PIGX,C3ORF34
SE_02_109200317 chr3:196739530-196755606 Sample_02_1092 Mammary gland T47D_shCtrl_24hr 317 4 497 77 2 25 205 PAK2,CEP19,PIGX,RNU6-42P
SE_02_108900252 chr3:196739532-196755901 Sample_02_1089 Mammary gland T47D_shCtrl_shRING1B_45min 252 2 506 77 2 25 205 PAK2,CEP19,PIGX,RNU6-42P
SE_02_080900393 chr3:196739545-196755911 Sample_02_0809 Mammary gland T47D Serum 393 2 505 77 2 25 205 PAK2,CEP19,PIGX,RNU6-42P
SE_02_143301590 chr3:196739590-196742007 Sample_02_1433 Bone A673 STAG2 null 1590 1 66 9 1 19 205 PAK2,CEP19,PIGX,RNU6-42P
SE_02_097300437 chr3:196739632-196774076 Sample_02_0973 Brain H3.3K27M-KO_BT245-c4p6-Rx_R2_cells 437 7 1114 130 3 33 205 PAK2,CEP19,PIGX,RNU6-42P
SE_02_081601852 chr3:196739661-196741987 Sample_02_0816 Ovary Clear cell ovarian cancer 1852 1 62 7 1 19 205 PAK2,CEP19,PIGX,RNU6-42P
SE_02_108600162 chr3:196739673-196755904 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 162 3 499 75 2 23 205 PAK2,CEP19,PIGX,RNU6-42P
SE_02_109300225 chr3:196739707-196757717 Sample_02_1093 Mammary gland T47D_shCtrl_shRING1B_24hr 225 6 558 85 2 26 201 PAK2,CEP19,PIGX,RNU6-42P
SE_02_108700115 chr3:196739719-196756204 Sample_02_1087 Mammary gland T47D_shCtrl_shRING1B_0 115 4 511 80 2 23 201 PAK2,CEP19,PIGX,RNU6-42P
SE_02_108800186 chr3:196739728-196759181 Sample_02_1088 Mammary gland T47D_shCtrl_45min 186 4 605 92 3 26 199 PAK2,CEP19,PIGX,RNU6-42P
SE_02_109000187 chr3:196739784-196755739 Sample_02_1090 Mammary gland T47D_shCtrl_8hr 187 5 490 75 2 23 179 PAK2,CEP19,PIGX,RNU6-42P
SE_02_109100126 chr3:196739790-196755436 Sample_02_1091 Mammary gland T47D_shCtrl_shRING1B_8hr 126 3 483 75 2 23 173 PAK2,CEP19,PIGX,RNU6-42P
SE_02_146400259 chr3:196739940-196759179 Sample_02_1464 Ovary CAOV4 259 5 595 92 3 19 125 PAK2,CEP19,PIGX,RNU6-42P
SE_02_053200371 chr3:196740306-196755426 Sample_02_0532 Mammary gland T47D 371 5 467 74 2 16 3 PAK2,CEP19,PIGX,RNU6-42P
SE_02_146500257 chr3:196742068-196762780 Sample_02_1465 Ovary CAOV4cis 257 7 655 91 2 7 0 PAK2,CEP19,PIGX,RNU6-42P
SE_02_101701804 chr3:196752805-196803378 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1804 13 1639 140 2 31 137 RNU6-42P,PAK2,CEP19,PIGX
SE_02_047900789 chr3:196760504-196795483 Sample_02_0479 Head and neck SCC25 789 25 1182 104 0 23 47 RNU6-42P,PAK2,CEP19,PIGX
SE_02_154000337 chr3:196760908-196796499 Sample_02_1540 Nasopharyngeal HK1 337 12 1208 105 0 23 47 RNU6-42P,PAK2,CEP19,PIGX
SE_02_048001168 chr3:196768502-196794067 Sample_02_0480 Gingival epithelial HGEP 1168 10 851 77 0 20 47 RNU6-42P,PAK2
SE_02_000500344 chr3:196771823-196795122 Sample_02_0005 Cervical cervical-cancer_KDM5C 344 2 783 71 0 20 47 PAK2
SE_02_146400077 chr3:196772371-196808336 Sample_02_1464 Ovary CAOV4 77 9 1135 93 0 38 222 RNU6-42P,PAK2
SE_02_108800027 chr3:196772426-196808906 Sample_02_1088 Mammary gland T47D_shCtrl_45min 27 6 1161 93 0 38 222 RNU6-42P,PAK2
SE_02_048101471 chr3:196773113-196795922 Sample_02_0481 Mammary gland MDA-MB231 1471 12 766 70 0 19 47 RNU6-42P,PAK2
SE_02_136200841 chr3:196773515-196794972 Sample_02_1362 Bladder UMUC1_sonic_pSIN-puro H1146A/E1148A-mutant UTX 841 7 729 68 0 16 47 RNU6-42P,PAK2
SE_02_136100669 chr3:196773738-196794947 Sample_02_1361 Bladder UMUC1_sonic_pSIN-puro_WTUTX 669 7 723 68 0 16 47 RNU6-42P,PAK2
SE_02_039400110 chr3:196773998-196808409 Sample_02_0394 Mammary gland T-47D_2 110 3 1090 91 0 34 222 PAK2
SE_02_053200141 chr3:196774283-196793868 Sample_02_0532 Mammary gland T47D 141 9 652 64 0 16 47 RNU6-42P,PAK2
SE_02_112100834 chr3:196774319-196794086 Sample_02_1121 Neonatal foreskin keratinocytes_Mi2KD 834 6 659 64 0 16 47 RNU6-42P,PAK2
SE_02_109300066 chr3:196774700-196808823 Sample_02_1093 Mammary gland T47D_shCtrl_shRING1B_24hr 66 3 1077 89 0 34 222 RNU6-42P,PAK2
SE_02_015000369 chr3:196777201-196815154 Sample_02_0150 Mammary gland MDA-MB-231_GATA3 369 4 1207 102 0 55 380 PAK2
SE_02_109200127 chr3:196778691-196808680 Sample_02_1092 Mammary gland T47D_shCtrl_24hr 127 5 943 79 0 34 222 RNU6-42P,PAK2
SE_02_108600043 chr3:196778845-196809251 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 43 5 954 80 0 34 222 RNU6-42P,PAK2
SE_02_108700028 chr3:196778847-196808891 Sample_02_1087 Mammary gland T47D_shCtrl_shRING1B_0 28 6 942 78 0 34 222 RNU6-42P,PAK2
SE_02_146500317 chr3:196781733-196794048 Sample_02_1465 Ovary CAOV4cis 317 4 410 42 0 15 47 RNU6-42P,PAK2
SE_02_007900192 chr3:196785269-196795193 Sample_02_0079 Mammary gland T-47D_1 192 1 356 36 0 4 0 PAK2
SE_02_080900094 chr3:196785279-196808564 Sample_02_0809 Mammary gland T47D Serum 94 3 735 58 0 22 175 PAK2,RNU6-42P
SE_02_109000043 chr3:196785574-196808729 Sample_02_1090 Mammary gland T47D_shCtrl_8hr 43 2 730 58 0 22 175 PAK2,RNU6-42P
SE_02_107700127 chr3:196785734-196809160 Sample_02_1077 Mammary gland MCF7_TET2KO-E2 127 3 741 59 0 22 175 PAK2,RNU6-42P
SE_02_108900067 chr3:196785774-196808634 Sample_02_1089 Mammary gland T47D_shCtrl_shRING1B_45min 67 2 720 58 0 22 175 PAK2,RNU6-42P
SE_02_005100187 chr3:196786143-196795631 Sample_02_0051 Mammary gland MCF-7_EtOH 187 3 335 34 0 4 0 PAK2
SE_02_109100035 chr3:196786145-196808556 Sample_02_1091 Mammary gland T47D_shCtrl_shRING1B_8hr 35 3 699 56 0 22 175 PAK2,RNU6-42P
SE_02_123400312 chr3:196786582-196808469 Sample_02_1234 Mammary gland T47D_Full 312 4 680 55 0 22 175 PAK2,RNU6-42P
SE_02_157800374 chr3:196786671-196809265 Sample_02_1578 Mammary gland MCF7_DAC+455 374 5 708 57 0 22 175 PAK2,RNU6-42P
SE_02_066700190 chr3:196786761-196808903 Sample_02_0667 Mammary gland MCF7_FA 190 4 692 53 0 22 175 PAK2,RNU6-42P
Genomic distribution of SEs associated with PAK2
Genome Browser

The strength of the tissue affected by the gene

Expression of PAK2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)