SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_109100035
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: T47D_shCtrl_shRING1B_8hr
Genomic region: chr3:196786145-196808556
Size: 22411
Super-enhancer rank 35
Number of SE elements: 3
ChIP density(Case|Control): 53788.6411|6310.9376
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RNU6-42P ;
ROSE Overlap PAK2 ;
ROSE Proximal RNU6-42P ;
ROSE Closest RNU6-42P ;
Lasso ;
PreSTIGE ;
ABC ;
BETA PIGX ; SENP5 ; PAK2 ; CEP19 ; RNU6-42P ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_109100035 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers