SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000235531
Gene: MSC-AS1 Gene type: lncRNA
Strand: + External links:
Genomic region: chr8:71828167-72118393 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_148900063 chr8:71820311-71843802 Sample_02_1489 Bone TC-106 63 7 756 38 3 22 415 MSC-AS1,MSC
SE_02_143200804 chr8:71826760-71861512 Sample_02_1432 Bone A673 STAG2 WT 804 11 968 78 7 77 622 MSC-AS1,MSC
SE_02_148200095 chr8:71826997-71868494 Sample_02_1482 Bone POE 95 9 1121 85 8 98 622 MSC-AS1,MSC
SE_02_105900265 chr8:71827138-71867019 Sample_02_1059 Bone A673_WT 265 17 1073 82 8 98 622 MSC-AS1,MSC
SE_02_147300266 chr8:71827138-71867019 Sample_02_1473 Bone A-673 266 17 1073 82 8 98 622 MSC-AS1,MSC
SE_02_147600032 chr8:71827166-71867008 Sample_02_1476 Bone EW-1 32 12 1070 81 8 98 622 MSC-AS1,MSC
SE_04_001000260 chr8:71827453-71859116 Sample_04_0010 Lung A549 TGFb 260 8 876 74 7 69 622 MSC-AS1,MSC
SE_02_078200213 chr8:71827482-71864853 Sample_02_0782 Blood MEC1 213 9 1012 79 8 84 622 MSC-AS1,MSC
SE_02_128000401 chr8:71827506-71867080 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 401 9 1059 81 8 98 622 MSC-AS1,MSC
SE_02_078300293 chr8:71827564-71875454 Sample_02_0783 Blood MEC2 293 8 1308 94 9 98 622 MSC-AS1,MSC
SE_02_107400073 chr8:71827578-71852806 Sample_02_1074 Lymphoma BC-1 73 6 727 62 5 65 622 MSC-AS1,MSC
SE_02_148100257 chr8:71827609-71868334 Sample_02_1481 Bone MIC 257 9 1091 83 8 98 622 MSC-AS1,MSC
SE_02_154900121 chr8:71827617-71866905 Sample_02_1549 Gastrointestinal Stromal GIST-430B 121 17 1048 81 8 98 622 MSC-AS1,MSC
SE_02_070200330 chr8:71827631-71844436 Sample_02_0702 Bone David_TC71 330 7 493 31 3 37 560 MSC-AS1,MSC
SE_02_147500443 chr8:71827659-71864621 Sample_02_1475 Bone CHLA-25 443 9 1002 79 8 84 622 MSC-AS1,MSC
SE_02_060900091 chr8:71828067-71867682 Sample_02_0609 Liposarcoma LPS141 91 16 1057 82 8 98 622 MSC-AS1,MSC
SE_02_138700262 chr8:71828094-71861381 Sample_02_1387 Peripheral blood Mac-1_ALK- 262 9 913 76 7 77 622 MSC-AS1,MSC
SE_02_078400267 chr8:71828095-71864512 Sample_02_0784 Blood OSU-CLL 267 6 985 79 8 84 622 MSC-AS1,MSC
SE_02_139200257 chr8:71828148-71857520 Sample_02_1392 Peripheral blood Mac-2A_ALK- 257 9 820 71 6 65 622 MSC-AS1,MSC
SE_02_145900092 chr8:71828164-71875807 Sample_02_1459 Pancreas THP1+PANC1_shCTCF 92 8 1295 94 9 98 622 MSC-AS1,MSC
SE_02_156000968 chr8:71828168-71859028 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 968 11 851 73 7 69 622 MSC-AS1,MSC
SE_02_126400147 chr8:71828180-71868111 Sample_02_1264 Bone Im-GCT-4072_G34W KO 147 8 1067 83 8 98 622 MSC-AS1,MSC
SE_02_049900479 chr8:71828209-71867601 Sample_02_0499 Fetal lung IMR90 IR Senescence 479 15 1046 82 8 98 622 MSC-AS1,MSC
SE_02_058600473 chr8:71828219-71865084 Sample_02_0586 Chordal patient-derived chordoma MGH_4 473 18 997 79 8 84 622 MSC-AS1,MSC
SE_02_156400165 chr8:71828246-71858040 Sample_02_1564 Gastrointestinal Stromal GIST-430 165 8 829 72 6 65 622 MSC-AS1,MSC
SE_02_154800418 chr8:71828247-71864288 Sample_02_1548 Gastrointestinal Stromal GIST-226 418 14 972 79 8 84 622 MSC-AS1,MSC
SE_02_126600306 chr8:71828252-71868198 Sample_02_1266 Bone Im-GCT-4072_G34W-repair_WT_E3 306 9 1068 83 8 98 622 MSC-AS1,MSC
SE_02_108100315 chr8:71828265-71868482 Sample_02_1081 Muscle CTR shCtrl 315 30 1077 83 8 98 622 MSC-AS1,MSC
SE_02_108000192 chr8:71828267-71868505 Sample_02_1080 Muscle JR1 shCtrl 192 23 1079 83 8 98 622 MSC-AS1,MSC
SE_02_094100134 chr8:71828284-71845196 Sample_02_0941 Brain T98G 134 4 494 32 3 40 622 MSC-AS1,MSC
SE_02_124100412 chr8:71828286-71863356 Sample_02_1241 Skin MCC26_virus_negative 412 11 950 78 8 77 622 MSC-AS1,MSC
SE_02_109800760 chr8:71828315-71850130 Sample_02_1098 Blood THP1_DMSO_noPMA 760 7 645 54 5 63 622 MSC-AS1,MSC
SE_02_045500691 chr8:71828349-71845065 Sample_02_0455 Th17 lymphocytes Th17-IL-10+ Day 5 691 5 492 32 3 40 622 MSC-AS1,MSC
SE_02_154600144 chr8:71828365-71858348 Sample_02_1546 Gastrointestinal Stromal GIST-430/654 144 7 836 72 7 68 622 MSC-AS1,MSC
SE_02_145800141 chr8:71828484-71875279 Sample_02_1458 Pancreas THP1+PANC1_shNC 141 10 1274 93 9 98 622 MSC-AS1,MSC
SE_02_142900214 chr8:71828603-71864848 Sample_02_1429 Blood GM12878_WT 214 9 980 79 8 84 622 MSC-AS1,MSC,RP11-383H13.1
SE_02_141500205 chr8:71828638-71865428 Sample_02_1415 Brain DIPGIV 205 11 998 81 8 85 622 MSC-AS1,MSC
SE_02_047400295 chr8:71828721-71866866 Sample_02_0474 Fibroblast umbilical cord Fibroblast 295 8 1022 81 8 98 622 MSC-AS1,MSC
SE_02_126501055 chr8:71828721-71867245 Sample_02_1265 Bone Im-GCT-4072_G34W-repair_WT_D6 1055 9 1031 82 8 98 622 MSC-AS1,MSC
SE_02_076201511 chr8:71828825-71864869 Sample_02_0762 Podocyte podocyte_CTL 1511 15 980 79 8 84 622 MSC-AS1,MSC
SE_02_142800465 chr8:71828860-71869027 Sample_02_1428 Shoulder fibroblast_316 465 13 1089 83 8 98 622 MSC-AS1,MSC
SE_02_143700786 chr8:71828863-71867597 Sample_02_1437 Liver LSEC-TNF 786 17 1036 82 8 98 622 MSC-AS1,MSC
SE_02_045700611 chr8:71829032-71844600 Sample_02_0457 Th17 lymphocytes Th17-IL-10- Day 5 611 5 468 31 3 40 607 MSC-AS1,MSC
SE_02_149600148 chr8:71829090-71844526 Sample_02_1496 Other monocyte-derived dendritic cells_R848_24h 148 9 468 31 3 37 586 MSC-AS1,MSC
SE_02_093600131 chr8:71829226-71866500 Sample_02_0936 Retinal Pigmented Epithelial RPE188_TnT 131 10 1008 81 8 95 622 MSC-AS1,MSC
SE_02_137700198 chr8:71829254-71867356 Sample_02_1377 Pancreas Pancreatic_tumor_associated_fibroblasts_BF1_untreated 198 22 1023 82 8 98 622 MSC-AS1,MSC
SE_02_056900468 chr8:71829260-71868280 Sample_02_0569 Periodontal ligament mesenchymal stem cell 468 21 1052 83 8 98 622 MSC-AS1,MSC
SE_02_093800203 chr8:71829573-71867043 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 203 7 1006 79 8 98 622 MSC-AS1,MSC
SE_02_079600203 chr8:71829710-71863765 Sample_02_0796 Brain 2229 203 12 930 76 8 81 622 MSC-AS1,MSC
SE_02_149400420 chr8:71829970-71843894 Sample_02_1494 Other monocyte-derived dendritic cells_0h 420 4 417 28 3 26 428 MSC-AS1,MSC
SE_01_009301153 chr8:71829980-71864095 Sample_01_0093 Aorta ascending aorta 1153 18 924 76 8 83 622 MSC-AS1,MSC
SE_01_011500263 chr8:71829986-71867878 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 263 9 1015 79 8 98 622 MSC-AS1,MSC
SE_02_074100401 chr8:71830084-71870692 Sample_02_0741 Muscle RH30 401 16 1104 83 9 98 622 MSC-AS1,MSC
SE_02_113300185 chr8:71830198-71867429 Sample_02_1133 Liver Hepatic stellate cells 185 12 992 79 8 98 622 MSC-AS1,MSC
SE_01_011000916 chr8:71830445-71854953 Sample_01_0110 Aorta thoracic aorta_37y 916 11 698 63 6 65 622 MSC-AS1,MSC
SE_02_139100274 chr8:71830520-71858403 Sample_02_1391 Peripheral blood FE-PD_ALK- 274 4 774 65 7 68 622 MSC-AS1,MSC
SE_02_087600265 chr8:71830580-71869049 Sample_02_0876 Muscle SMS-CTR_CASZ1b_Ctrl 265 21 1034 76 8 98 622 MSC-AS1,MSC
SE_02_141300405 chr8:71830581-71870774 Sample_02_1413 Muscle RH4_sgBRG1 405 19 1090 79 9 98 622 MSC-AS1,MSC
SE_02_107500150 chr8:71831014-71854969 Sample_02_1075 Lymphoma BC-3 150 7 675 57 6 65 622 MSC-AS1,MSC
SE_02_087700265 chr8:71831152-71868586 Sample_02_0877 Muscle SMS-CTR_CASZ1b_Dox 265 17 998 72 8 98 622 MSC-AS1,MSC
SE_02_091500977 chr8:71831545-71866532 Sample_02_0915 Heart left ventricle_DCM_LV1371 977 13 926 69 8 95 622 MSC-AS1,MSC
SE_02_138600552 chr8:71831626-71852249 Sample_02_1386 Peripheral blood Karpas-299_ALK+ 552 7 591 47 5 65 622 MSC-AS1,MSC
SE_02_084000240 chr8:71832508-71867709 Sample_02_0840 Embryo hNPCs_R1159Q/+ 240 9 930 67 8 98 622 MSC-AS1,MSC
SE_02_123600115 chr8:71838332-71869025 Sample_02_1236 Skin MKL1_virus_positive 115 14 816 65 7 98 622 MSC-AS1,MSC
SE_02_123700216 chr8:71840429-71869024 Sample_02_1237 Skin MKL2_virus_positive 216 17 741 65 7 91 622 MSC-AS1,MSC
SE_02_151600238 chr8:71846795-71867914 Sample_02_1516 Non-transformed mammary epithelial IMEC MYC 238 10 526 43 4 44 0 MSC-AS1,MSC
SE_02_137800811 chr8:71851684-71867916 Sample_02_1378 Pancreas Pancreatic_tumor_associated_fibroblasts_CAF08_untreated 811 9 383 23 3 34 0 MSC-AS1,MSC
SE_02_157100843 chr8:71853990-71867571 Sample_02_1571 Fibroblast Fibroblast cells 843 4 311 18 2 33 0 MSC-AS1,MSC
SE_02_154900137 chr8:71917704-72021232 Sample_02_1549 Gastrointestinal Stromal GIST-430B 137 37 2881 175 11 190 140 MSC-AS1,TRPA1
SE_02_154600062 chr8:71917761-71960689 Sample_02_1546 Gastrointestinal Stromal GIST-430/654 62 18 1219 102 4 98 0 MSC-AS1,MSC
SE_02_143200975 chr8:71939365-72005596 Sample_02_1432 Bone A673 STAG2 WT 975 23 1821 108 5 131 126 MSC-AS1,TRPA1
SE_02_143301821 chr8:71942733-71988147 Sample_02_1433 Bone A673 STAG2 null 1821 17 1215 71 3 98 126 MSC-AS1,TRPA1
SE_02_105900088 chr8:71942836-72008566 Sample_02_1059 Bone A673_WT 88 19 1823 105 6 132 126 MSC-AS1,TRPA1
SE_02_147300089 chr8:71942836-72008566 Sample_02_1473 Bone A-673 89 19 1823 105 6 132 126 MSC-AS1,TRPA1
SE_02_148900041 chr8:71942982-72017562 Sample_02_1489 Bone TC-106 41 34 2072 106 6 138 126 MSC-AS1,TRPA1
SE_02_147600053 chr8:71943005-72014623 Sample_02_1476 Bone EW-1 53 16 1988 106 6 138 126 MSC-AS1,TRPA1
SE_02_147500172 chr8:71943290-71988624 Sample_02_1475 Bone CHLA-25 172 10 1209 69 3 98 126 MSC-AS1,TRPA1
SE_02_148400232 chr8:71943413-71959772 Sample_02_1484 Bone Rh1 232 6 448 30 0 33 0 MSC-AS1,MSC
SE_02_148200336 chr8:71943810-71959459 Sample_02_1482 Bone POE 336 7 426 28 0 33 0 MSC-AS1,MSC
SE_02_128000236 chr8:71943994-72017641 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 236 25 2044 103 6 138 126 MSC-AS1,TRPA1
SE_02_148100494 chr8:71945379-71981871 Sample_02_1481 Bone MIC 494 10 968 57 3 90 126 MSC-AS1,TRPA1
SE_02_147700511 chr8:71946098-71959239 Sample_02_1477 Bone EW-22 511 8 354 24 0 21 0 MSC-AS1,MSC
SE_02_156400239 chr8:71946222-71963158 Sample_02_1564 Gastrointestinal Stromal GIST-430 239 13 442 29 0 39 47 MSC-AS1,MSC
SE_02_147400302 chr8:71946607-71999843 Sample_02_1474 Bone CHLA-10 302 12 1428 85 3 102 126 MSC-AS1,TRPA1
SE_02_105300206 chr8:71974764-72035507 Sample_02_1053 Esophagus OACM5.1 206 39 1721 72 10 131 346 MSC-AS1,TRPA1
SE_02_154600146 chr8:71975521-72019332 Sample_02_1546 Gastrointestinal Stromal GIST-430/654 146 16 1241 58 7 82 0 MSC-AS1,TRPA1,MSC
SE_02_148200844 chr8:71975558-72018132 Sample_02_1482 Bone POE 844 9 1212 58 6 82 0 MSC-AS1,TRPA1
SE_02_126400768 chr8:71978891-72007785 Sample_02_1264 Bone Im-GCT-4072_G34W KO 768 14 838 48 3 73 0 MSC-AS1,TRPA1
SE_02_126600459 chr8:71978921-72001384 Sample_02_1266 Bone Im-GCT-4072_G34W-repair_WT_E3 459 8 619 38 0 72 0 MSC-AS1,TRPA1
SE_02_147700336 chr8:71979130-71997086 Sample_02_1477 Bone EW-22 336 7 499 35 0 61 0 MSC-AS1,TRPA1
SE_02_045500757 chr8:71996148-72005782 Sample_02_0455 Th17 lymphocytes Th17-IL-10+ Day 5 757 3 278 10 1 25 0 MSC-AS1,TRPA1,MSC
SE_02_107500309 chr8:71996329-72005842 Sample_02_1075 Lymphoma BC-3 309 4 279 11 2 25 0 MSC-AS1,TRPA1
SE_02_107400107 chr8:71997879-72006119 Sample_02_1074 Lymphoma BC-1 107 2 258 10 2 11 0 MSC-AS1,TRPA1
SE_02_154800027 chr8:72013182-72113177 Sample_02_1548 Gastrointestinal Stromal GIST-226 27 35 2740 102 32 168 1271 MSC-AS1,TRPA1
Genomic distribution of SEs associated with MSC-AS1
Genome Browser

The strength of the tissue affected by the gene

Expression of MSC-AS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)