SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000108244
Gene: KRT23 Gene type: protein_coding
Strand: - External links:
Genomic region: chr17:40922700-40937646 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_105500010 chr17:40881703-40938683 Sample_02_1055 Esophagus KYAE1 10 10 1608 195 4 158 865 KRT23,KRT20,KRT39,KRT12,KRT40
SE_02_023700283 chr17:40882848-40962745 Sample_02_0237 Colon V389 283 20 2248 304 5 254 1059 KRT20,KRT39,KRT23,KRTAP3-3,KRTAP3-1,KRT12,KRTAP3-2,KRT40
SE_02_024200559 chr17:40882879-40923560 Sample_02_0242 Colon V481 559 6 1112 123 3 87 189 KRT20,KRT23,KRT39,KRT12
SE_02_036100180 chr17:40883096-40923463 Sample_02_0361 Colon HT29_DMSO 180 7 1106 121 2 87 189 KRT20,KRT23,KRT39,KRT12
SE_02_035300384 chr17:40883172-40923477 Sample_02_0353 Colon HT29 384 7 1105 121 2 87 189 KRT20,KRT23,KRT39,KRT12
SE_02_008600041 chr17:40884278-40964950 Sample_02_0086 Pancreas CAPAN1 41 6 2274 307 4 255 1178 KRT20,KRT39,KRT23,KRTAP3-3,KRTAP3-1,KRT12,KRTAP3-2,KRT40
SE_02_008000006 chr17:40887898-40963236 Sample_02_0080 Lung Calu-3 6 12 2138 291 4 234 949 KRT23,KRT39,KRTAP3-3,KRTAP3-1,KRT12,KRT20,KRTAP3-2,KRT40
SE_02_136700299 chr17:40888187-40939173 Sample_02_1367 Pancreas Capan1-untreated 299 13 1458 186 3 139 711 KRT23,KRT39,KRT20,KRT12,KRT40
SE_02_077501085 chr17:40891064-40939695 Sample_02_0775 Pancreas EndoC-BH1_SE 1085 14 1388 186 2 138 711 KRT23,KRT39,KRT20,KRT12,KRT40,KRTAP3-3
SE_03_000500579 chr17:40895196-40923500 Sample_03_0005 Lung A549_dexamethasone_0.5h 579 6 793 97 1 55 79 KRT23,KRT39,KRT12,KRT20
SE_02_076200273 chr17:40895403-40962680 Sample_02_0762 Podocyte podocyte_CTL 273 11 1921 277 3 221 943 KRT23,KRT39,KRT20,KRTAP3-3,KRTAP3-1,KRT12,KRTAP3-2,KRT40
SE_02_070500317 chr17:40895404-40935749 Sample_02_0705 Pancreas AsPC1 WT 317 14 1146 149 2 97 391 KRT23,KRT39,KRT12,KRT20
SE_02_016800556 chr17:40900251-40923390 Sample_02_0168 Prostate LNCaP 556 3 629 77 1 54 79 KRT23,KRT39,KRT12,KRT20
SE_02_001000349 chr17:40900445-40923503 Sample_02_0010 Kidney A-498_emptyvector 349 4 622 78 1 54 79 KRT23,KRT39,KRT12,KRT20
SE_01_005800303 chr17:40900504-40922976 Sample_01_0058 Prostate PC-3 303 3 615 75 1 53 44 KRT23,KRT39,KRT12,KRT20
SE_02_019900224 chr17:40900540-40923250 Sample_02_0199 Stomach KATO3 224 6 618 75 1 54 72 KRT23,KRT39,KRT12,KRT20
SE_02_035400268 chr17:40900551-40958952 Sample_02_0354 Colon Colo205 268 7 1644 245 2 202 813 KRT23,KRT39,KRTAP3-3,KRT12,KRT20,KRTAP3-2,KRT40
SE_02_001100520 chr17:40900585-40923250 Sample_02_0011 Kidney A-498_wtVHL 520 5 616 75 1 54 72 KRT23,KRT39,KRT12,KRT20
SE_02_016600059 chr17:40900607-40964893 Sample_02_0166 Mammary gland HCC1954_Parental 59 7 1816 265 3 225 1068 KRT23,KRT39,KRTAP3-3,KRTAP3-1,KRT12,KRT20,KRTAP3-2,KRT40
SE_02_016700018 chr17:40900607-40964893 Sample_02_0167 Mammary gland HCC1954_LCC2 18 7 1816 265 3 225 1068 KRT23,KRT39,KRTAP3-3,KRTAP3-1,KRT12,KRT20,KRTAP3-2,KRT40
SE_02_035200391 chr17:40900632-40923374 Sample_02_0352 Colon HCT116 391 7 619 75 1 54 79 KRT23,KRT39,KRT12,KRT20
SE_02_152500034 chr17:40900653-40964394 Sample_02_1525 Stomach N87 DMSO 34 13 1799 263 3 222 1041 KRT23,KRT39,KRT20,KRTAP3-3,KRTAP3-1,KRT12,KRTAP3-2,KRT40
SE_02_029500339 chr17:40900680-40923291 Sample_02_0295 Lung A549_TGFBeta_72h 339 6 617 75 1 54 79 KRT23,KRT39,KRT12,KRT20
SE_02_070900178 chr17:40900704-40960077 Sample_02_0709 Pancreas hT85_organoid 178 20 1678 251 3 203 817 KRT23,KRT39,KRT20,KRTAP3-3,KRTAP3-1,KRT12,KRTAP3-2,KRT40
SE_02_042700148 chr17:40900715-40923437 Sample_02_0427 Colon HCT116_shPAF1 148 4 619 76 1 54 79 KRT23,KRT39,KRT12,KRT20
SE_02_125800543 chr17:40900726-40939238 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 543 9 1093 154 2 126 711 KRT23,KRT39,KRT20,KRT12,KRT40
SE_02_071100875 chr17:40900813-40922852 Sample_02_0711 Pancreas hN35_organoid 875 8 608 75 1 52 32 KRT23,KRT39,KRT12,KRT20
SE_02_017300497 chr17:40900895-40923980 Sample_02_0173 Lung IMR-90_senescent 497 8 628 80 1 53 79 KRT23,KRT39,KRT12,KRT20
SE_02_042600030 chr17:40900926-40964765 Sample_02_0426 Colon HCT116_NONT 30 4 1805 263 3 223 1068 KRT23,KRT39,KRTAP3-3,KRTAP3-1,KRT12,KRT20,KRTAP3-2,KRT40
SE_02_071700698 chr17:40900931-40935622 Sample_02_0717 Pancreas HPAFII_GFP_DOX 698 13 968 126 1 94 391 KRT23,KRT39,KRT12,KRT20
SE_01_003400175 chr17:40900935-40923415 Sample_01_0034 Colon HCT116 175 3 615 76 1 52 79 KRT23,KRT39,KRT12,KRT20
SE_02_070800381 chr17:40900938-40923003 Sample_02_0708 Pancreas hF3 organoid 381 12 608 75 1 51 45 KRT23,KRT39,KRT12,KRT20
SE_02_071200961 chr17:40900947-40923032 Sample_02_0712 Pancreas BxPC3_sgNEG 961 7 608 75 1 52 46 KRT23,KRT39,KRT12,KRT20
SE_02_026800863 chr17:40900953-40923476 Sample_02_0268 Kidney A-498 863 4 615 76 1 52 79 KRT23,KRT39,KRT12,KRT20
SE_02_017200380 chr17:40901107-40936526 Sample_02_0172 Lung IMR-90_quiescent 380 5 997 134 2 101 493 KRT23,KRT39,KRT12,KRT20
SE_02_042800815 chr17:40901233-40923254 Sample_02_0428 Kidney 12364284_VHL- 815 7 609 75 1 50 74 KRT23,KRT39,KRT12,KRT20
SE_02_001200441 chr17:40901255-40923482 Sample_02_0012 Kidney 786-O_non-targeting 441 4 613 76 1 50 79 KRT23,KRT39,KRT12,KRT20
SE_02_042900490 chr17:40901257-40923288 Sample_02_0429 Kidney 12364284_VHL+ 490 6 609 75 1 50 79 KRT23,KRT39,KRT12,KRT20
SE_02_072100605 chr17:40901270-40935769 Sample_02_0721 Pancreas HPAFII_TP63dN_DOX 605 9 971 130 2 93 391 KRT23,KRT39,KRT12,KRT20
SE_01_005900156 chr17:40901337-40923140 Sample_01_0059 Lung PC-9 156 4 605 75 1 50 56 KRT23,KRT39,KRT12,KRT20
SE_02_105200071 chr17:40901364-40923339 Sample_02_1052 Esophagus JH-EsoAd1 71 16 610 75 1 50 79 KRT23,KRT39,KRT12,KRT20
SE_01_005600128 chr17:40901493-40959839 Sample_01_0056 Bone osteoblast 128 5 1660 251 3 199 817 KRT23,KRT39,KRTAP3-3,KRTAP3-1,KRT12,KRT20,KRTAP3-2,KRT40
SE_01_004500109 chr17:40901512-40923495 Sample_01_0045 Mammary gland mammary-epithelial-cell 109 4 608 78 1 50 79 KRT23,KRT39,KRT12,KRT20
SE_02_126701499 chr17:40901514-40923302 Sample_02_1267 Bone Im-GCT-4072_G34W 1499 4 605 75 1 50 79 KRT23,KRT39,KRT12,KRT20
SE_02_009900072 chr17:40901534-40938225 Sample_02_0099 Foreskin Epidermal-Stem-Cells_shDNMT3B 72 6 1052 146 2 121 711 KRT23,KRT39,KRT12,KRT20,KRT40
SE_02_017100103 chr17:40901546-40960967 Sample_02_0171 Lung IMR-90_proliferating 103 7 1693 254 3 205 882 KRT23,KRT39,KRTAP3-3,KRTAP3-1,KRT12,KRT20,KRTAP3-2,KRT40
SE_02_043000377 chr17:40901550-40923074 Sample_02_0430 Kidney 12364284 377 11 602 75 1 50 53 KRT23,KRT39,KRT12,KRT20
SE_02_009700100 chr17:40901617-40934422 Sample_02_0097 Foreskin Epidermal-Stem-Cells_shCTRL 100 7 933 125 1 79 391 KRT23,KRT39,KRT12,KRT20
SE_02_111300945 chr17:40901618-40923428 Sample_02_1113 Bone U2OS 945 11 606 76 1 50 79 KRT23,KRT39,KRT12,KRT20
SE_02_074800228 chr17:40901634-40938903 Sample_02_0748 Mammary gland HCC1599_WO 228 8 1068 149 2 121 711 KRT23,KRT39,KRT20,KRT12,KRT40
SE_02_010701009 chr17:40901687-40923624 Sample_02_0107 Endometrium EEC16 1009 3 608 77 1 51 79 KRT23,KRT39,KRT12,KRT20
SE_02_126301700 chr17:40901710-40923411 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 1700 4 600 74 1 50 79 KRT23,KRT39,KRT12,KRT20
SE_02_017500306 chr17:40901738-40923297 Sample_02_0175 Lung IMR-90_Etoposide 306 10 598 74 1 50 79 KRT23,KRT39,KRT12,KRT20
SE_02_026300494 chr17:40901747-40922823 Sample_02_0263 Osteoblastic hFOB_undifferentiated 494 3 589 74 1 49 31 KRT23,KRT39,KRT12,KRT20
SE_02_020900512 chr17:40901772-40924103 Sample_02_0209 Lung MRC-5_MRC5_1DPT 512 6 618 79 1 51 79 KRT23,KRT39,KRT12,KRT20
SE_03_000300139 chr17:40901905-40923517 Sample_03_0003 Foreskin foreskin-keratinocyte-calcium5.5day 139 4 597 77 1 50 79 KRT23,KRT39,KRT12,KRT20
SE_01_002700490 chr17:40901929-40938108 Sample_01_0027 Prostate epithelial-cell-of-prostate 490 5 1038 145 2 121 711 KRT23,KRT39,KRT12,KRT20,KRT40
SE_02_127901585 chr17:40901930-40933492 Sample_02_1279 Bone Mesenchymal stem cells 1585 7 896 122 1 79 391 KRT23,KRT39,KRT12,KRT20
SE_02_007300630 chr17:40901977-40930333 Sample_02_0073 Other 90-8TL_DMSO 630 9 811 104 1 68 340 KRT23,KRT39,KRT12,KRT20
SE_02_087901479 chr17:40902021-40922762 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 1479 5 581 74 1 49 28 KRT23,KRT39,KRT12,KRT20
SE_02_005700327 chr17:40902053-40938300 Sample_02_0057 Mammary gland vHMEC 327 8 1040 145 2 121 711 KRT23,KRT39,KRT12,KRT20,KRT40
SE_01_004100766 chr17:40902055-40922797 Sample_01_0041 Skin keratinocyte 766 4 579 74 1 49 29 KRT23,KRT39,KRT12,KRT20
SE_02_076601320 chr17:40902150-40938414 Sample_02_0766 Ovary PEO1 1320 16 1042 145 2 121 711 KRT23,KRT39,KRT20,KRT12,KRT40
SE_02_007400512 chr17:40902299-40923582 Sample_02_0074 Other 90-8TL_PDJQ 512 5 589 76 1 48 79 KRT23,KRT39,KRT12,KRT20
SE_02_080900112 chr17:40902306-40964631 Sample_02_0809 Mammary gland T47D Serum 112 20 1771 261 3 219 1066 KRT23,KRT39,KRT20,KRTAP3-3,KRTAP3-1,KRT12,KRTAP3-2,KRT40
SE_02_019000021 chr17:40902352-40937472 Sample_02_0190 Stomach SNU638 21 10 1007 138 2 117 655 KRT23,KRT39,KRT12,KRT20,KRT40
SE_02_155200943 chr17:40902374-40924072 Sample_02_1552 HMSCs hMSC ATCC SCRC-4000 943 6 601 78 1 49 79 KRT23,KRT39,KRT12,KRT20
SE_02_074900284 chr17:40902425-40939170 Sample_02_0749 Mammary gland HCC1599_GSI 284 11 1058 152 2 120 711 KRT23,KRT39,KRT20,KRT12,KRT40
SE_02_035600265 chr17:40902971-40959710 Sample_02_0356 Colon Sw480 265 6 1614 245 2 197 817 KRT23,KRT39,KRTAP3-3,KRTAP3-1,KRT12,KRT20,KRTAP3-2,KRT40
SE_01_001900596 chr17:40909230-40923231 Sample_01_0019 Brain and spinal cord astrocyte 596 3 379 56 1 44 69 KRT23,KRT39,KRT12,KRT20
SE_02_052100397 chr17:40933287-40959701 Sample_02_0521 Colon SW480 397 3 749 129 1 120 426 KRT23,KRT39,KRT20,KRTAP3-3,KRTAP3-1,KRTAP3-2,KRT40
SE_00_003100329 chr17:40933851-40961509 Sample_00_0031 Placenta placenta 329 3 796 131 2 129 491 KRT23,KRT39,KRTAP3-3,KRTAP3-1,KRT20,KRTAP3-2,KRT40
SE_02_035800542 chr17:40935181-40959581 Sample_02_0358 Colon LS180 542 2 697 122 1 110 426 KRT23,KRT39,KRTAP3-3,KRTAP3-1,KRT20,KRTAP3-2,KRT40
SE_02_086200082 chr17_JH159146v1_alt:1117-111316 Sample_02_0862 Malignant rhaboid tumor TTC1240_SMARCB1 FL 82 39 0 0 0 0 0 KRT12,KRT23,KRT20,KRT39
SE_02_086300086 chr17_JH159146v1_alt:1482-111439 Sample_02_0863 Malignant rhaboid tumor TTC1240_empty 86 33 0 0 0 0 0 KRT12,KRT23,KRT20,KRT39
SE_02_086400087 chr17_JH159146v1_alt:1492-111514 Sample_02_0864 Malignant rhaboid tumor TTC1240_SMARCB1_K364del 87 40 0 0 0 0 0 KRT12,KRT23,KRT20,KRT39
SE_02_086600101 chr17_JH159146v1_alt:1583-110493 Sample_02_0866 Malignant rhaboid tumor TTC1240_SMARCB1_delCC 101 39 0 0 0 0 0 KRT12,KRT23,KRT20,KRT39
SE_02_086500091 chr17_JH159146v1_alt:1658-111106 Sample_02_0865 Malignant rhaboid tumor TTC1240_SMARCB1_R377H 91 34 0 0 0 0 0 KRT12,KRT23,KRT20,KRT39
SE_02_105500007 chr17_JH159146v1_alt:32899-109198 Sample_02_1055 Esophagus KYAE1 7 16 0 0 0 0 0 KRT23,KRT20,KRT39
SE_02_070900157 chr17_JH159146v1_alt:34135-113927 Sample_02_0709 Pancreas hT85_organoid 157 24 0 0 0 0 0 KRT23,KRT20,KRT39
SE_02_136700307 chr17_JH159146v1_alt:37448-88236 Sample_02_1367 Pancreas Capan1-untreated 307 14 0 0 0 0 0 KRT23
SE_02_071700595 chr17_JH159146v1_alt:37556-87149 Sample_02_0717 Pancreas HPAFII_GFP_DOX 595 15 0 0 0 0 0 KRT23
SE_02_070500194 chr17_JH159146v1_alt:44677-109004 Sample_02_0705 Pancreas AsPC1 WT 194 22 0 0 0 0 0 KRT23,KRT39
SE_02_076200300 chr17_JH159146v1_alt:44820-112089 Sample_02_0762 Podocyte podocyte_CTL 300 10 0 0 0 0 0 KRT23,KRT39
SE_02_071200910 chr17_JH159146v1_alt:49750-72124 Sample_02_0712 Pancreas BxPC3_sgNEG 910 10 0 0 0 0 0 KRT23
SE_02_071100917 chr17_JH159146v1_alt:49953-72255 Sample_02_0711 Pancreas hN35_organoid 917 11 0 0 0 0 0 KRT23
SE_02_125800597 chr17_JH159146v1_alt:49998-88181 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 597 11 0 0 0 0 0 KRT23
SE_02_152500038 chr17_JH159146v1_alt:50203-110052 Sample_02_1525 Stomach N87 DMSO 38 11 0 0 0 0 0 KRT23,KRT39
SE_02_070701046 chr17_JH159146v1_alt:50246-72144 Sample_02_0707 Pancreas BxPC3 WT 1046 7 0 0 0 0 0 KRT23
SE_02_072100490 chr17_JH159146v1_alt:50303-87143 Sample_02_0721 Pancreas HPAFII_TP63dN_DOX 490 11 0 0 0 0 0 KRT23
SE_02_105200061 chr17_JH159146v1_alt:50350-72598 Sample_02_1052 Esophagus JH-EsoAd1 61 13 0 0 0 0 0 KRT23
SE_02_070800383 chr17_JH159146v1_alt:50416-72359 Sample_02_0708 Pancreas hF3 organoid 383 11 0 0 0 0 0 KRT23
SE_02_126301726 chr17_JH159146v1_alt:50763-72674 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 1726 5 0 0 0 0 0 KRT23
SE_02_126701602 chr17_JH159146v1_alt:50829-72399 Sample_02_1267 Bone Im-GCT-4072_G34W 1602 4 0 0 0 0 0 KRT23
SE_02_074800230 chr17_JH159146v1_alt:50982-88550 Sample_02_0748 Mammary gland HCC1599_WO 230 6 0 0 0 0 0 KRT23
SE_02_127901484 chr17_JH159146v1_alt:51013-82679 Sample_02_1279 Bone Mesenchymal stem cells 1484 8 0 0 0 0 0 KRT23
SE_02_111300919 chr17_JH159146v1_alt:51141-72726 Sample_02_1113 Bone U2OS 919 10 0 0 0 0 0 KRT23
SE_02_087801485 chr17_JH159146v1_alt:51395-72536 Sample_02_0878 Ovary SVOG3e cells_noDox_control 1485 7 0 0 0 0 0 KRT23
SE_02_080900247 chr17_JH159146v1_alt:51621-87912 Sample_02_0809 Mammary gland T47D Serum 247 14 0 0 0 0 0 KRT23
SE_02_074900277 chr17_JH159146v1_alt:51671-88240 Sample_02_0749 Mammary gland HCC1599_GSI 277 7 0 0 0 0 0 KRT23
SE_02_052100414 chr17_JH159146v1_alt:82651-108450 Sample_02_0521 Colon SW480 414 5 0 0 0 0 0 KRT23,KRT39
SE_02_064800966 chr17_JH159146v1_alt:85187-113954 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 966 10 0 0 0 0 0 KRT23,KRT39
SE_02_045800227 chr17_JH159146v1_alt:86303-108324 Sample_02_0458 Colon HCT116 DMSO 227 11 0 0 0 0 0 KRT23,KRT39
SE_02_155200864 chr17_JH159146v1_alt:86403-114948 Sample_02_1552 HMSCs hMSC ATCC SCRC-4000 864 14 0 0 0 0 0 KRT23,KRT39
Genomic distribution of SEs associated with KRT23
Genome Browser

The strength of the tissue affected by the gene

Expression of KRT23

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)