SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000163812
Gene: ZDHHC3 Gene type: protein_coding
Strand: - External links:
Genomic region: chr3:44915257-44976185 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_112900238 chr3:44993303-45037505 Sample_02_1129 Adipose visceral adipose_CTL_HCTR13 238 18 1188 145 4 87 900 CLEC3B,EXOSC7,ZDHHC3,KIAA1143
SE_02_109900025 chr3:45040966-45144773 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 25 57 2861 276 13 116 1291 CDCP1,CLEC3B,EXOSC7,ZDHHC3,TMEM158
SE_04_000100628 chr3:45040990-45108414 Sample_04_0001 Blood heat shocked K562 628 11 1837 195 10 55 983 CDCP1,CLEC3B,EXOSC7,ZDHHC3,TMEM158
SE_04_000200066 chr3:45040990-45146635 Sample_04_0002 Blood cold shocked K562 66 25 2927 280 13 120 1446 CDCP1,CLEC3B,EXOSC7,ZDHHC3,TMEM158
SE_02_054500004 chr3:45040991-45146613 Sample_02_0545 Bone marrow K562 WT 4 46 2926 280 13 120 1446 CDCP1,CLEC3B,EXOSC7,ZDHHC3,TMEM158
SE_02_098800010 chr3:45041022-45108432 Sample_02_0988 Blood K562_EPZ 10 34 1837 195 10 55 983 CDCP1,CLEC3B,EXOSC7,ZDHHC3,TMEM158
SE_02_098700018 chr3:45041065-45144684 Sample_02_0987 Blood K562_Control_1 18 31 2858 276 13 116 1291 CDCP1,CLEC3B,EXOSC7,ZDHHC3,TMEM158
SE_01_003900020 chr3:45041104-45144904 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 20 21 2863 276 13 116 1291 CDCP1,CLEC3B,EXOSC7,TE158,ZDHHC3
SE_02_122900071 chr3:45041317-45145826 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 71 63 2883 277 13 117 1291 CDCP1,CLEC3B,EXOSC7,ZDHHC3,TMEM158
SE_02_113000198 chr3:45041370-45110638 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 198 17 1899 199 10 60 1061 CDCP1,CLEC3B,EXOSC7,ZDHHC3,TMEM158
SE_02_103300317 chr3:45041513-45110674 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 317 16 1898 199 10 62 1066 CDCP1,CLEC3B,EXOSC7,ZDHHC3,TMEM158
SE_02_111600184 chr3:45041642-45107025 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 184 23 1778 189 9 55 983 CDCP1,CLEC3B,EXOSC7,ZDHHC3,TMEM158
SE_02_142300075 chr3:45051663-45082209 Sample_02_1423 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_1h 75 11 889 111 2 6 28 CLEC3B,EXOSC7,ZDHHC3,CDCP1,TMEM158
SE_02_054600044 chr3:45054173-45107280 Sample_02_0546 Bone marrow K562_MYO1D Non-hub KO 44 16 1486 158 7 54 983 CDCP1,CLEC3B,EXOSC7,ZDHHC3,TMEM158
SE_02_142400207 chr3:45079598-45107029 Sample_02_1424 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_4h 207 7 719 57 5 48 983 CDCP1,CLEC3B,EXOSC7,ZDHHC3,TMEM158
SE_02_144700056 chr3:45085963-45169081 Sample_02_1447 Adipose SW872_CAMTA1 56 17 2366 261 9 125 883 CDCP1,TMEM158,ZDHHC3
SE_02_142200028 chr3:45093706-45138347 Sample_02_1422 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_0h 28 15 1209 80 6 67 418 CDCP1,EXOSC7,ZDHHC3,TMEM158
Genomic distribution of SEs associated with ZDHHC3
Genome Browser

The strength of the tissue affected by the gene

Expression of ZDHHC3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)