SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003900020
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562
Genomic region: chr3:45041104-45144904
Size: 103800
Super-enhancer rank 20
Number of SE elements: 21
ChIP density(Case|Control): 108387.96|18237.66
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: CDCP1 ;
ROSE Overlap CDCP1 ;
ROSE Proximal CLEC3B ;
ROSE Closest CDCP1 ;
Lasso CDCP1 ; EXOSC7 ; TE158 ; ZDHHC3 ;
PreSTIGE CDCP1 ; EXOSC7 ; TE158 ;
ABC CLEC3B ; LIMD1 ; SACM1L ; LARS2-AS1 ; LARS2 ; TMEM158 ; LIMD1-AS1 ; ZNF35 ; CDCP1 ; EXOSC7 ; ZDHHC3 ;
BETA CLEC3B ; CDCP1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003900020 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers