SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000186652
Gene: PRG2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr11:57386780-57390650 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_00_003101162 chr11:57275976-57296457 Sample_00_0031 Placenta placenta 1162 4 502 62 2 56 0 P2RX3,TNKS1BP1,APLNR,SSRP1,PRG2
SE_02_093000806 chr11:57276874-57324963 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 806 22 1286 132 5 314 2141 TNKS1BP1,APLNR,P2RX3,SSRP1,PRG2
SE_04_000200490 chr11:57382374-57433807 Sample_04_0002 Blood cold shocked K562 490 9 1446 142 6 143 2118 SLC43A3,PRG2,PRG3,SSRP1,RTN4RL2,P2RX3,TNKS1BP1,RP11-872D17.8,SLC43A1,UBE2L6,TIMM10
SE_02_132000269 chr11:57387506-57435287 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 269 19 1327 138 5 150 2060 SLC43A3,PRG2,PRG3,RTN4RL2,P2RX3,SERPING1,SLC43A1,SSRP1,ZDHHC5,TMX2,TNKS1BP1,C11orf31,UBE2L6
SE_01_003900373 chr11:57395507-57433243 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 373 8 1044 108 3 111 1601 SLC43A3,RTN4RL2,PRG2,PRG3,RP11-872D17.8,SSRP1
SE_02_122901084 chr11:57402330-57433887 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 1084 14 865 86 2 107 1539 SLC43A3,PRG2,RTN4RL2,PRG3,SSRP1,RP11-872D17.8,SLC43A1,UBE2L6,TIMM10,TNKS1BP1
SE_02_083100637 chr11:57405261-57427596 Sample_02_0831 Umblical vein HUVECs_TNF0min 637 8 636 61 1 64 1498 SLC43A3,PRG2,RTN4RL2,PRG3,RP11-872D17.8
SE_02_095001305 chr11:57405337-57427670 Sample_02_0950 Umbilical vein HUVEC_WT 1305 8 637 61 1 61 1511 SLC43A3,PRG2,RTN4RL2,PRG3,RP11-872D17.8
SE_02_058500650 chr11:57405423-57427598 Sample_02_0585 Umbilical vein HUVEC 0hour 650 9 633 61 1 61 1498 SLC43A3,PRG2,RTN4RL2,PRG3,RP11-872D17.8
SE_02_083200394 chr11:57405456-57427680 Sample_02_0832 Umblical vein HUVECs_TNF30min 394 6 633 61 1 61 1514 SLC43A3,PRG2,RTN4RL2,PRG3,RP11-872D17.8
SE_02_151900711 chr11:57405640-57426363 Sample_02_1519 Umbilical vein HUVEC_Scr_IL1beta 711 13 584 57 1 59 1246 SLC43A3,PRG2,RTN4RL2,PRG3,RP11-872D17.8
SE_02_152000756 chr11:57405652-57426358 Sample_02_1520 Umbilical vein HUVEC_Notch1kd_IL1beta 756 10 583 57 1 59 1246 SLC43A3,PRG2,RTN4RL2,PRG3,RP11-872D17.8
SE_02_109900462 chr11:57421409-57434018 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 462 7 338 30 0 56 573 SLC43A3,PRG2,RTN4RL2,PRG3,SLC43A1,SSRP1,UBE2L6,TIMM10,TNKS1BP1
SE_04_000100915 chr11:57422940-57433999 Sample_04_0001 Blood heat shocked K562 915 3 304 29 0 55 541 SLC43A3,PRG2,RTN4RL2,PRG3,SLC43A1,SSRP1,UBE2L6,TIMM10,TNKS1BP1
SE_02_054501012 chr11:57423727-57433996 Sample_02_0545 Bone marrow K562 WT 1012 3 283 25 0 55 541 SLC43A3,PRG2,RTN4RL2,PRG3,SLC43A1,SSRP1,UBE2L6,TIMM10,TNKS1BP1
SE_02_132100922 chr11:57423802-57433478 Sample_02_1321 Connective Tissue HT1080_FUS-DDIT3 922 4 267 25 0 40 540 SLC43A3,PRG2,RTN4RL2,PRG3,SERPING1,SLC43A1,SSRP1,ZDHHC5,TMX2,TNKS1BP1,C11orf31,UBE2L6
SE_02_098800969 chr11:57424330-57434340 Sample_02_0988 Blood K562_EPZ 969 4 272 24 0 58 479 SLC43A3,PRG2,RTN4RL2,PRG3,SLC43A1,SSRP1,UBE2L6,TIMM10,TNKS1BP1
Genomic distribution of SEs associated with PRG2
Genome Browser

The strength of the tissue affected by the gene

Expression of PRG2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)