SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID:
Gene: HIST1H3A Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_098900679 chr6:25955456-25994224 Sample_02_0989 Kidney kidney cortex_WT 679 14 907 94 18 18 975 TRIM38,HIST1H2AB,HIST1H1A,SLC17A2,HIST1H3A,HIST1H4B,HIST1H2BB,HIST1H3B,HIST1H4A,HIST1H2AC,HIST1H3C,HIST1H4C,HIST1H1C,HIST1H1E
SE_02_046601159 chr6:25959015-25993617 Sample_02_0466 Adipose visceral adipocytes 1159 17 797 73 11 18 975 TRIM38,HIST1H2AB,HIST1H4B,SLC17A2,HIST1H1A,HIST1H3A,HIST1H3B,HIST1H4A,HIST1H3C,HIST1H1C,HIST1H2BB
SE_00_002100310 chr6:26015974-26045286 Sample_00_0021 Lung lung_3y 310 6 989 80 18 110 805 HIST1H2BB,HIST1H4B,HIST1H3B,HIST1H2AB,HIST1H3A,HIST1H1A,HIST1H4A,HFE,HIST1H3C,HIST1H1C,HIST1H1T
SE_00_002200385 chr6:26017138-26045918 Sample_00_0022 Lung lung_30y 385 7 987 78 17 115 854 HIST1H2BB,HIST1H4B,HIST1H3B,HIST1H2AB,HIST1H3A,HIST1H1A,HIST1H3C,HIST1H4A,HFE,HIST1H1C,HIST1H1T
SE_00_004000032 chr6:26017170-26045912 Sample_00_0040 Spleen spleen_30y 32 5 982 78 17 115 845 HIST1H2BB,HIST1H4B,HIST1H3B,HIST1H2AB,HIST1H3A,HIST1H1A,HIST1H3C,HIST1H4A,HFE,HIST1H1C,HIST1H1T,HIST1H2BC,SLC17A2
SE_00_004500138 chr6:26042781-26047241 Sample_00_0045 Thymus thymus 138 1 163 18 3 27 196 HIST1H2BB,HIST1H3C,HIST1H3B,HIST1H4B,HIST1H4A,HFE,HIST1H1A,HIST1H2AB,HIST1H1C,HIST1H3A,HIST1H1E,HIST1H1T,HIST1H2AC,HIST1H2AD,HIST1H2AE,HIST1H2BC,HIST1H2BD,HIST1H2BE,HIST1H3D,HIST1H4C,TRI38
SE_00_003900938 chr6:26042929-26046181 Sample_00_0039 Spleen spleen_3y 938 1 144 14 2 27 196 HIST1H2BB,HIST1H3C,HIST1H3B,HIST1H4B,HIST1H4A,HFE,HIST1H1A,HIST1H2AB,HIST1H1C,HIST1H3A,HIST1H1T,HIST1H2BC,SLC17A2
SE_04_000200381 chr6:26050698-26071985 Sample_04_0002 Blood cold shocked K562 381 4 620 51 9 28 178 HIST1H1C,HFE,HIST1H2AB,HIST1H3C,HIST1H1A,HIST1H3A,HIST1H1T,HIST1H4B,HIST1H2BB,HIST1H4C,HIST1H3B,HIST1H4A,BTN2A2,HIST1H1E,HIST1H2AC
SE_02_113000514 chr6:26051315-26071777 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 514 3 602 49 9 28 178 HIST1H1C,HFE,HIST1H2AB,HIST1H3C,HIST1H1A,HIST1H3A,HIST1H1T,HIST1H4B,HIST1H2BB,HIST1H4C,HIST1H3B,HIST1H4A,BTN2A2,HIST1H1E,HIST1H2AC
SE_02_111600643 chr6:26051505-26071668 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 643 5 591 49 9 28 178 HIST1H1C,HFE,HIST1H2AB,HIST1H3C,HIST1H1A,HIST1H3A,HIST1H1T,HIST1H4B,HIST1H2BB,HIST1H4C,HIST1H3B,HIST1H4A,BTN2A2,HIST1H1E,HIST1H2AC
SE_02_054500453 chr6:26051551-26071622 Sample_02_0545 Bone marrow K562 WT 453 4 588 49 9 28 178 HIST1H1C,HFE,HIST1H2AB,HIST1H3C,HIST1H1A,HIST1H3A,HIST1H1T,HIST1H4B,HIST1H2BB,HIST1H4C,HIST1H3B,HIST1H4A,BTN2A2,HIST1H1E,HIST1H2AC
SE_02_122901264 chr6:26051657-26071864 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 1264 8 595 50 9 28 178 HIST1H1C,HFE,HIST1H2AB,HIST1H3C,HIST1H1A,HIST1H3A,HIST1H1T,HIST1H4B,HIST1H2BB,HIST1H4C,HIST1H3B,HIST1H4A,BTN2A2,HIST1H1E,HIST1H2AC
SE_01_003900654 chr6:26052372-26066616 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 654 3 448 34 6 28 178 HIST1H1C,HIST1H3B,HIST1H1A,HIST1H4A,HFE,HIST1H3C,HIST1H4B,HIST1H2AB,HIST1H1T,HIST1H3A,HIST1H2BB,HIST1H4C,BTN2A2,HIST1H1E,HIST1H2AC
SE_02_054600307 chr6:26052759-26058666 Sample_02_0546 Bone marrow K562_MYO1D Non-hub KO 307 2 277 16 3 22 178 HIST1H1C,HFE,HIST1H2AB,HIST1H3C,HIST1H1A,HIST1H3A,HIST1H1T,HIST1H4B,HIST1H2BB,HIST1H4C,HIST1H3B,HIST1H4A,BTN2A2,HIST1H1E,HIST1H2AC
SE_02_098800885 chr6:26054096-26071694 Sample_02_0988 Blood K562_EPZ 885 3 521 42 9 28 178 HIST1H1C,HFE,HIST1H2AB,HIST1H3C,HIST1H1A,HIST1H3A,HIST1H1T,HIST1H4B,HIST1H2BB,HIST1H4C,HIST1H3B,HIST1H4A,BTN2A2,HIST1H1E,HIST1H2AC
SE_00_004500058 chr6:26114860-26128746 Sample_00_0045 Thymus thymus 58 3 433 60 19 53 249 HIST1H2AC,HIST1H2BC,HIST1H2BD,HFE,HIST1H1T,HIST1H1E,HIST1H4C,HIST1H1C,HIST1H1D,HIST1H2AB,HIST1H2AD,HIST1H2AE,HIST1H2BB,HIST1H2BE,HIST1H2BF,HIST1H2BG,HIST1H2BH,HIST1H3A,HIST1H3B,HIST1H3C,HIST1H3D,HIST1H3F,HIST1H4A,HIST1H4B,HIST1H4D,HIST1H4E
SE_02_098900707 chr6:26120147-26128697 Sample_02_0989 Kidney kidney cortex_WT 707 1 314 46 14 51 227 HIST1H2AC,HIST1H2BC,HFE,HIST1H2BD,HIST1H1E,HIST1H1T,HIST1H4C,HIST1H2AB,HIST1H2BF,HIST1H2BE,HIST1H2BI,HIST1H3A,HIST1H3D,HIST1H3C,HIST1H3G,HIST1H3B,HIST1H4A,HIST1H4D,HIST1H4H,HIST1H4B,HIST1H4E,HIST1H1C,HIST1H1D,HIST1H1A,TRIM38,HIST1H3F,HIST1H2AE,HIST1H2BB
SE_02_088001265 chr6:26120603-26127581 Sample_02_0880 Ovary SVOG3e cells_noDox_transduced_V5-FOXL2_WT 1265 2 276 36 12 50 227 HIST1H2AC,HIST1H2BC,HFE,HIST1H2BD,HIST1H1E,HIST1H1T,HIST1H4C,HIST1H2AB,HIST1H2BG,HIST1H2BF,HIST1H2BH,HIST1H3A,HIST1H3B,HIST1H2AE
SE_02_069400043 chr6:26120605-26126986 Sample_02_0694 Lung NCI-H82_no infection 43 3 249 33 9 49 227 HIST1H2AC,HIST1H2BC,HFE,HIST1H2BD,HIST1H1E,HIST1H1T,HIST1H4C,HIST1H2BE,HIST1H3A,HIST1H3D,HIST1H3B,HIST1H4A,HIST1H4D,HIST1H4B,HIST1H1D
SE_02_087801443 chr6:26120816-26127370 Sample_02_0878 Ovary SVOG3e cells_noDox_control 1443 1 265 34 10 50 227 HIST1H2AC,HIST1H2BC,HFE,HIST1H2BD,HIST1H1E,HIST1H1T,HIST1H4C,HIST1H2AB,HIST1H2BG,HIST1H2BF,HIST1H2BH,HIST1H3A,HIST1H3B,HIST1H2AE
SE_02_108200664 chr6:26121713-26128309 Sample_02_1082 Retina retina 664 2 263 37 11 51 227 HIST1H2AC,HIST1H2BC,HFE,HIST1H2BD,HIST1H1E,HIST1H1T,HIST1H4C,HIST1H2BI,HIST1H3A,HIST1H4B
SE_01_010400945 chr6:26122345-26127306 Sample_01_0104 Lung upper lobe of left lung 945 1 220 27 7 50 227 HIST1H2AC,HIST1H2BC,HFE,HIST1H2BD,HIST1H1E,HIST1H1T,HIST1H4C,HIST1H2BH,HIST1H2BI,HIST1H3A,HIST1H3G,HIST1H3B,HIST1H1D,TRIM38,HIST1H3F,HIST1H2AE
SE_00_005500213 chr6:26122367-26126857 Sample_00_0055 Spleen spleen 34y 213 1 200 23 5 49 227 HIST1H2AC,HIST1H2BC,HFE,HIST1H2BD,HIST1H1E,HIST1H1T,HIST1H4C,BTN2A2,BTN3A2,HIST1H2AB,HIST1H2BG,HIST1H2BE,HIST1H3A,HIST1H3D,HIST1H3E,HIST1H3B,HIST1H4A,HIST1H4H,HIST1H4B,HIST1H4E,HIST1H1C,HIST1H1D,HIST1H1A,TRIM38,HIST1H2AE,HIST1H2BB
SE_01_010500821 chr6:26124097-26142835 Sample_01_0105 Thyroid gland thyroid gland_54y 821 7 534 65 15 47 225 HIST1H2AC,HFE,HIST1H2BE,HIST1H4D,HIST1H2BC,HIST1H2BD,HIST1H1E,HIST1H1T,HIST1H4C,HIST1H2AB,HIST1H2BG,HIST1H2BF,HIST1H2BH,HIST1H2BI,HIST1H3A,HIST1H3D,HIST1H3C,HIST1H3E,HIST1H3G,HIST1H3B,HIST1H4A,HIST1H4F,HIST1H4H,HIST1H4B,HIST1H4E,HIST1H4G,HIST1H1C,HIST1H1D,HIST1H1A,TRIM38,HIST1H3
Genomic distribution of SEs associated with HIST1H3A
Genome Browser

The strength of the tissue affected by the gene

Expression of HIST1H3A

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)