Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000253438
Gene: PCAT1 Gene type: lncRNA
Strand: + External links:
Genomic region: chr8:126556323-127419050 Genome Browser:

Super-enhancer search result of gene-based

SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_139500017 chr8:126804804-126806031 Sample_02_1395 Colon COLO320-DM_DMSO 17 1 62 0 0 0 0 PCAT1
SE_02_068800002 chr8:126804847-126882614 Sample_02_0688 Lung NCI-H211_no infection 2 17 2202 29 9 163 0 PCAT1
SE_02_128400001 chr8:126804855-126882156 Sample_02_1284 Lung NCI-H211_p8-15 1 18 2178 29 9 163 0 PCAT1
SE_02_148000149 chr8:126807520-126834880 Sample_02_1480 Bone MHH-ES-1 149 6 674 4 7 51 0 PCAT1
SE_02_148500074 chr8:126807732-126834268 Sample_02_1485 Bone SK-ES-1 74 4 658 4 7 50 0 PCAT1
SE_02_148600058 chr8:126807813-126834444 Sample_02_1486 Bone SK-N-MC 58 8 659 4 7 51 0 PCAT1
SE_02_148200173 chr8:126808118-126848666 Sample_02_1482 Bone POE 173 10 1038 7 7 72 0 PCAT1
SE_02_148800027 chr8:126808234-126837897 Sample_02_1488 Bone TC-71 27 9 746 4 7 52 0 PCAT1
SE_02_106100027 chr8:126808234-126837911 Sample_02_1061 Bone TC71_WT 27 9 746 4 7 52 0 PCAT1
SE_02_106000022 chr8:126808436-126834517 Sample_02_1060 Bone TC71_SA2 KO 22 5 641 4 7 51 0 PCAT1
SE_02_147600002 chr8:126808473-126846731 Sample_02_1476 Bone EW-1 2 10 974 5 7 68 0 PCAT1
SE_02_155000054 chr8:126808518-126834456 Sample_02_1550 Bone EWS502 54 15 639 4 7 51 0 PCAT1
SE_02_070200012 chr8:126808682-126834461 Sample_02_0702 Bone David_TC71 12 15 636 4 7 51 0 PCAT1
SE_02_147800133 chr8:126808806-126849964 Sample_02_1478 Bone EW-3 133 9 1053 7 7 73 0 PCAT1
SE_02_148100281 chr8:126808967-126849510 Sample_02_1481 Bone MIC 281 14 1034 7 7 73 0 PCAT1
SE_02_105800473 chr8:126809006-126852176 Sample_02_1058 Bone A673_SA2 Rescue 473 10 1113 11 7 74 0 PCAT1
SE_02_105900437 chr8:126809011-126837827 Sample_02_1059 Bone A673_WT 437 9 717 4 7 52 0 PCAT1
SE_02_147300437 chr8:126809011-126837827 Sample_02_1473 Bone A-673 437 9 717 4 7 52 0 PCAT1
SE_02_147700207 chr8:126809029-126834418 Sample_02_1477 Bone EW-22 207 9 622 4 7 51 0 PCAT1
SE_02_147400132 chr8:126809205-126849576 Sample_02_1474 Bone CHLA-10 132 10 1035 7 7 73 0 PCAT1
SE_02_143200657 chr8:126809571-126847027 Sample_02_1432 Bone A673 STAG2 WT 657 16 956 6 7 68 0 PCAT1
SE_02_070100087 chr8:126809590-126834511 Sample_02_0701 Bone David_TC32 87 12 614 4 7 51 0 PCAT1
SE_02_143300969 chr8:126809631-126851663 Sample_02_1433 Bone A673 STAG2 null 969 19 1085 10 7 74 0 PCAT1
SE_02_128100001 chr8:126810202-126891334 Sample_02_1281 Lung NCI-H1048_p8-15 1 31 2282 30 11 181 0 PCAT1
SE_02_068500011 chr8:126819269-126891723 Sample_02_0685 Lung NCI-H1048_no infection 11 22 2104 27 11 181 0 PCAT1
SE_02_069700009 chr8:126819296-126891783 Sample_02_0697 Lung NCI-H1048-cas9_sgHROSA 9 34 2107 27 11 181 0 PCAT1
SE_02_069800016 chr8:126819506-126891838 Sample_02_0698 Lung NCI-H1048-cas9_sgPOU2F3 16 18 2103 27 11 182 0 PCAT1
SE_02_152100437 chr8:126819623-126852511 Sample_02_1521 Skin A375 DMSO 437 11 897 8 7 69 0 PCAT1
SE_02_071200768 chr8:126821416-126898162 Sample_02_0712 Pancreas BxPC3_sgNEG 768 20 2245 31 12 197 0 PCAT1
SE_02_049101244 chr8:126823548-126846295 Sample_02_0491 Pharyng Detroit 562-Control 1244 9 599 1 7 62 0 PCAT1
SE_02_149300017 chr8:126823688-126879595 Sample_02_1493 Skin SK-MEL-5_DMSO_6h 17 20 1595 24 9 148 0 PCAT1
SE_02_087700065 chr8:126823778-126874931 Sample_02_0877 Muscle SMS-CTR_CASZ1b_Dox 65 23 1444 23 8 118 0 PCAT1
SE_02_049201193 chr8:126823916-126846348 Sample_02_0492 Pharyng Detroit 562_LPS 1193 10 585 1 5 61 0 PCAT1
SE_02_155100093 chr8:126823963-126877400 Sample_02_1551 Gastrointestinal Stromal MaMel 93 19 1516 24 7 144 0 PCAT1
SE_02_151500557 chr8:126824059-126846769 Sample_02_1515 Non-transformed mammary epithelial IMEC WT 557 7 598 1 5 62 0 PCAT1
SE_02_044300238 chr8:126824141-126835350 Sample_02_0443 Bone MG63 238 7 282 0 5 45 0 PCAT1
SE_02_057201279 chr8:126824146-126841602 Sample_02_0572 Brain LN229_1_mM_glucose 1279 6 441 0 5 49 0 PCAT1
SE_02_153400429 chr8:126824150-126834837 Sample_02_1534 Mammary gland MDA-MB-231_ER?WT_0min 429 5 268 0 5 44 0 PCAT1
SE_02_076900233 chr8:126824272-126839977 Sample_02_0769 Ovary HEYA8 233 5 409 0 5 45 0 PCAT1
SE_02_093900358 chr8:126824533-126835349 Sample_02_0939 Mammary gland MDA-MB-231_control 358 5 275 0 5 45 0 PCAT1
SE_02_153700650 chr8:126824549-126834846 Sample_02_1537 Mammary gland MDA-MB-231_ER?_L540Q_45min 650 2 261 0 5 44 0 PCAT1
SE_02_153600738 chr8:126824651-126834597 Sample_02_1536 Mammary gland MDA-MB-231_ER?_L540Q_0min 738 4 252 0 5 44 0 PCAT1
SE_02_153500447 chr8:126824677-126834076 Sample_02_1535 Mammary gland MDA-MB-231_ER?WT_45min 447 7 240 0 5 40 0 PCAT1
SE_02_143601409 chr8:126824686-126835412 Sample_02_1436 Liver LSEC-Ctrl 1409 2 272 0 5 45 0 PCAT1
SE_02_107300297 chr8:126824690-126879685 Sample_02_1073 Keratinocyte keratinocytes stem cell 297 12 1569 24 7 147 0 PCAT1
SE_02_070800413 chr8:126824696-126845904 Sample_02_0708 Pancreas hF3 organoid 413 8 552 1 5 58 0 PCAT1
SE_02_048000274 chr8:126824719-126899045 Sample_02_0480 Gingival epithelial HGEP 274 21 2157 30 10 198 0 PCAT1
SE_02_070700627 chr8:126824741-126846660 Sample_02_0707 Pancreas BxPC3 WT 627 10 580 1 5 61 0 PCAT1
SE_02_127200728 chr8:126824776-126834507 Sample_02_1272 Leiomyosarcoma SK-LMS-1_HDAC4KO 728 7 246 0 5 44 0 PCAT1
SE_02_148000148 chr8:126867437-126918854 Sample_02_1480 Bone MHH-ES-1 148 16 1560 34 13 161 0 PCAT1
SE_02_105800102 chr8:126867924-126938337 Sample_02_1058 Bone A673_SA2 Rescue 102 24 2192 54 17 191 0 PCAT1
SE_02_106100690 chr8:126868458-126886819 Sample_02_1061 Bone TC71_WT 690 6 617 4 0 74 0 PCAT1
SE_02_148800691 chr8:126868458-126886819 Sample_02_1488 Bone TC-71 691 6 617 4 0 74 0 PCAT1
SE_02_143200331 chr8:126868879-126936604 Sample_02_1432 Bone A673 STAG2 WT 331 27 2098 49 17 181 0 PCAT1
SE_02_147600024 chr8:126868959-126918542 Sample_02_1476 Bone EW-1 24 11 1488 32 11 158 0 PCAT1
SE_02_105900101 chr8:126869072-126935487 Sample_02_1059 Bone A673_WT 101 14 2047 47 17 178 0 PCAT1
SE_02_147300101 chr8:126869072-126935487 Sample_02_1473 Bone A-673 101 14 2047 47 17 178 0 PCAT1
SE_02_106000726 chr8:126874175-126886252 Sample_02_1060 Bone TC71_SA2 KO 726 5 390 2 0 54 0 PCAT1
SE_02_142000102 chr8:126874499-126882682 Sample_02_1420 Brain DIPG007 102 3 270 2 0 40 0 PCAT1
SE_02_044300009 chr8:126876443-126964836 Sample_02_0443 Bone MG63 9 27 2671 89 19 217 0 PCAT1
SE_02_094900548 chr8:126876445-126951658 Sample_02_0949 Umbilical artery HUAEC_WT 548 18 2295 67 17 192 0 PCAT1
SE_02_044200197 chr8:126878464-126937776 Sample_02_0442 Bone MG63.3 197 20 1810 50 17 148 0 PCAT1
SE_02_143300601 chr8:126899011-126926574 Sample_02_1433 Bone A673 STAG2 null 601 14 817 29 13 65 0 PCAT1
SE_02_139500016 chr8:126902352-126910927 Sample_02_1395 Colon COLO320-DM_DMSO 16 4 217 4 2 26 0 PCAT1
SE_02_106000115 chr8:126904236-126918490 Sample_02_1060 Bone TC71_SA2 KO 115 5 390 24 7 47 0 PCAT1
SE_02_106100365 chr8:126906252-126918516 Sample_02_1061 Bone TC71_WT 365 3 348 23 6 46 0 PCAT1
SE_02_148800364 chr8:126906252-126918516 Sample_02_1488 Bone TC-71 364 3 348 23 6 46 0 PCAT1
SE_02_147400536 chr8:126906379-126918579 Sample_02_1474 Bone CHLA-10 536 4 346 23 6 46 0 PCAT1
SE_02_070200073 chr8:126907332-126918515 Sample_02_0702 Bone David_TC71 73 6 321 23 6 46 0 PCAT1
SE_02_102100394 chr8:126922140-126952002 Sample_02_1021 Mammary gland SUM159R 394 6 970 37 3 49 0 PCAT1
SE_02_102200016 chr8:126924446-126936422 Sample_02_1022 Mammary gland SUM159_WT 16 3 401 13 2 23 0 PCAT1
SE_02_102300013 chr8:126925025-126952653 Sample_02_1023 Mammary gland SUM159_BRD7_KO 13 8 882 34 2 52 0 PCAT1
SE_02_102000106 chr8:126925619-126935196 Sample_02_1020 Mammary gland SUM159 106 3 315 11 2 20 0 PCAT1
SE_02_081500169 chr8:126925659-126935208 Sample_02_0815 Mammary gland SUM159PT 169 3 317 11 2 20 0 PCAT1
SE_02_078800018 chr8:126931555-126947915 Sample_02_0788 Brain 3565 18 5 516 21 0 40 0 PCAT1
SE_02_142000103 chr8:126932658-126937062 Sample_02_1420 Brain DIPG007 103 1 144 6 0 18 0 PCAT1
SE_02_105801220 chr8:126951646-126998807 Sample_02_1058 Bone A673_SA2 Rescue 1220 14 1555 143 4 77 0 PCAT1
SE_02_078800005 chr8:126960586-127000578 Sample_02_0788 Brain 3565 5 12 1375 126 4 68 0 PCAT1
SE_02_080200098 chr8:126963206-127011010 Sample_02_0802 Brain 3094 98 11 1588 133 3 73 0 PCAT1
SE_02_128100119 chr8:126963803-126988092 Sample_02_1281 Lung NCI-H1048_p8-15 119 9 855 97 1 33 0 PCAT1
SE_02_106100766 chr8:126964034-126991981 Sample_02_1061 Bone TC71_WT 766 7 1002 114 2 38 0 PCAT1
SE_02_130700023 chr8:126964308-126979091 Sample_02_1307 Brain Glioblastoma patient derived cancer stem cell 23 9 505 67 1 33 0 PCAT1
SE_02_142000012 chr8:126964861-126998991 Sample_02_1420 Brain DIPG007 12 9 1181 121 2 56 0 PCAT1
SE_02_102300084 chr8:126966166-127001157 Sample_02_1023 Mammary gland SUM159_BRD7_KO 84 7 1215 121 3 63 0 PCAT1
SE_02_139500044 chr8:126977479-126979254 Sample_02_1395 Colon COLO320-DM_DMSO 44 1 54 5 0 11 0 PCAT1
SE_02_130800689 chr8:126990138-127009902 Sample_02_1308 Artery Pulmonary artery endothelial cells_caMEK5 689 4 607 23 1 36 0 PCAT1
SE_02_128400080 chr8:127002109-127019326 Sample_02_1284 Lung NCI-H211_p8-15 80 6 531 27 4 40 128 PCAT1
SE_02_068800080 chr8:127002168-127019346 Sample_02_0688 Lung NCI-H211_no infection 80 7 531 27 4 40 128 PCAT1
SE_02_069700282 chr8:127003738-127019091 Sample_02_0697 Lung NCI-H1048-cas9_sgHROSA 282 8 473 25 4 39 128 PCAT1
SE_02_068500331 chr8:127005367-127019018 Sample_02_0685 Lung NCI-H1048_no infection 331 6 426 24 4 37 128 PCAT1
SE_02_128100031 chr8:127005702-127019278 Sample_02_1281 Lung NCI-H1048_p8-15 31 8 423 24 4 39 128 PCAT1
SE_02_076400328 chr8:127009989-127025187 Sample_02_0764 Prostate LNCaP_DHT_DMSO_6h 328 1 476 19 4 36 288 PCAT1
SE_02_140800124 chr8:127010064-127025080 Sample_02_1408 Prostate LNCaP_EtOH_vehicle_4h_MED19_OE 124 1 471 19 4 36 288 PCAT1
SE_02_140900252 chr8:127010134-127025036 Sample_02_1409 Prostate LNCaP_R1881 4h_MED19_OE 252 1 470 19 4 36 288 PCAT1
SE_02_066400059 chr8:127010161-127065625 Sample_02_0664 Prostate LNCaP_DMSO 59 12 1651 25 14 153 288 PCAT1,PCAT2,PRNCR1
SE_02_140700113 chr8:127010298-127065299 Sample_02_1407 Prostate LNCaP_R1881 4h 113 15 1635 25 14 153 288 PCAT1,PCAT2,PRNCR1
SE_02_067300065 chr8:127010375-127025037 Sample_02_0673 Prostate LNCAP_FA 65 3 465 19 4 36 288 PCAT1
SE_02_051100033 chr8:127010409-127066024 Sample_02_0511 Prostate LNCaP95_shARv7_ETOH 33 13 1658 25 14 153 288 PCAT1,PCAT2,PRNCR1
SE_02_051000235 chr8:127010996-127024536 Sample_02_0510 Prostate LNCaP95_shGFP_DHT 235 6 435 18 4 33 288 PCAT1
SE_02_050900103 chr8:127011005-127024715 Sample_02_0509 Prostate LNCaP95_shGFP_ETOH 103 6 440 18 4 33 288 PCAT1
SE_02_140600224 chr8:127014899-127025051 Sample_02_1406 Prostate LNCaP_EtOH_vehicle_4h 224 1 331 3 2 15 160 PCAT1
SE_02_139500074 chr8:127018325-127019484 Sample_02_1395 Colon COLO320-DM_DMSO 74 1 41 0 0 7 0 PCAT1
SE_02_102100033 chr8:127028950-127057050 Sample_02_1021 Mammary gland SUM159R 33 10 803 3 8 101 0 PCAT2,PCAT1,PRNCR1
SE_02_066100526 chr8:127029489-127056897 Sample_02_0661 Mammary gland MCF10DCIS-TetTCF7 526 9 782 3 8 101 0 PCAT2,PCAT1,PRNCR1
SE_02_070800279 chr8:127033846-127039396 Sample_02_0708 Pancreas hF3 organoid 279 6 160 1 3 35 0 PCAT2,PCAT1,PRNCR1
SE_02_102300023 chr8:127034166-127057350 Sample_02_1023 Mammary gland SUM159_BRD7_KO 23 7 688 3 8 101 0 PCAT2,PCAT1,PRNCR1
SE_02_102200013 chr8:127034453-127057418 Sample_02_1022 Mammary gland SUM159_WT 13 7 677 3 8 101 0 PCAT2,PCAT1,PRNCR1
SE_02_094500407 chr8:127034611-127042577 Sample_02_0945 Brain SF767 407 6 247 1 6 51 0 PCAT2,PCAT1,PRNCR1
SE_02_128100190 chr8:127034721-127054498 Sample_02_1281 Lung NCI-H1048_p8-15 190 9 602 3 7 99 0 PCAT2,PCAT1,PRNCR1
SE_02_074800326 chr8:127034848-127055263 Sample_02_0748 Mammary gland HCC1599_WO 326 3 622 3 8 99 0 PCAT2,PCAT1,PRNCR1
SE_02_068500751 chr8:127034997-127053965 Sample_02_0685 Lung NCI-H1048_no infection 751 6 584 3 7 92 0 PCAT2,PCAT1,PRNCR1
SE_02_074900860 chr8:127035028-127054888 Sample_02_0749 Mammary gland HCC1599_GSI 860 4 610 3 7 99 0 PCAT2,PCAT1,PRNCR1
SE_02_051100187 chr8:127089573-127114983 Sample_02_0511 Prostate LNCaP95_shARv7_ETOH 187 4 812 5 16 66 0 PRNCR1,PCAT2,PCAT1
SE_02_051200099 chr8:127090214-127101775 Sample_02_0512 Prostate LNCaP95_shARv7_DHT 99 6 407 1 11 39 0 PRNCR1,PCAT2,PCAT1

Genomic distribution of SEs associated with PCAT1

The strength of the tissue affected by the gene


Expression of PCAT1