Sample overview


Search result

SE ID SE Region Size Rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_155000024 chr1:116347555-116378163 30608 24 17 736 13 1 109 550 ATP1A1,ATP1A1-AS1
SE_02_155000156 chr1:13686444-13734484 48040 156 12 1151 35 3 122 388 PRDM2
SE_02_155000033 chr1:163555929-163597532 41603 33 19 1147 2 2 149 0 LOC100422212
SE_02_155000162 chr1:164556001-164603519 47518 162 15 1105 4 3 356 313 PBX1
SE_02_155000037 chr1:172342729-172400631 57902 37 21 1328 119 16 316 444 DNM3,PIGC,C1ORF105
SE_02_155000161 chr1:183830348-183850749 20401 161 9 566 39 3 39 66 RGL1
SE_02_155000012 chr1:185683590-185736641 53051 12 19 1467 95 1 111 129 HMCN1
SE_02_155000017 chr1:192472991-192550286 77295 17 19 1990 58 5 101 0 RGS1
SE_02_155000181 chr1:197653285-197694648 41363 181 18 927 20 4 84 63 DENND1B
SE_02_155000122 chr1:198731261-198775152 43891 122 17 1126 23 6 109 535 PTPRC,MIR181B1
SE_02_155000011 chr1:198864586-198937399 72813 11 30 1713 43 2 293 70 MIR181A1HG,MIR181A1,MIR181B1
SE_02_155000018 chr1:199143413-199183803 40390 18 12 999 14 2 98 0 LINC01222
SE_02_155000100 chr1:199657940-199691517 33577 100 14 866 2 2 56 0 NR5A2
SE_02_155000177 chr1:216172885-216207671 34786 177 17 937 2 4 182 360 USH2A,LOC102723833
SE_02_155000092 chr1:224487230-224509338 22108 92 8 507 42 2 30 0 WDR26
SE_02_155000133 chr1:231075718-231107627 31909 133 14 988 52 2 0 0 FAM89A
SE_02_155000023 chr1:236639440-236682004 42564 23 16 1301 275 5 64 0 ACTN2,HEATR1
SE_02_155000030 chr1:241524826-241564157 39331 30 14 1192 102 7 33 270 KMO,FH
SE_02_155000014 chr1:241664522-241722924 58402 14 18 1520 52 5 73 247 WDR64,CHML,OPN3
SE_02_155000107 chr1:57703376-57731391 28015 107 16 773 37 0 106 0 DAB1,DAB1-AS1,C8B
SE_02_155000042 chr1:61078252-61139463 61211 42 31 1378 25 4 614 395 NFIA
SE_02_155000113 chr1:78407659-78438345 30686 113 13 831 41 2 34 0 PTGFR
SE_02_155000114 chr1:85330218-85376772 46554 114 17 1124 111 79 145 125 DDAH1,BCL10
SE_02_155000123 chr10:32374858-32404135 29277 123 21 767 98 6 60 80 EPC1,CCDC7,LOC102031319,LOC101929431
SE_02_155000169 chr11:114138945-114164783 25838 169 12 781 10 5 241 100 ZBTB16
SE_02_155000089 chr11:16344886-16383984 39098 89 26 858 10 4 263 0 SOX6
SE_02_155000138 chr11:65476735-65501426 24691 138 9 745 78 4 17 449 MALAT1,SCYL1,MIR612
SE_02_155000055 chr11:69598912-69645297 46385 55 14 1330 63 6 131 472 CCND1,ORAOV1
SE_02_155000044 chr11:83721390-83757592 36202 44 22 966 17 1 83 0 DLG2
SE_02_155000099 chr12:63893706-63942235 48529 99 17 1260 60 1 108 0 SRGAP1
SE_02_155000168 chr12:64076463-64097284 20821 168 10 499 21 0 83 432 SRGAP1,C12ORF66
SE_02_155000103 chr12:71869833-71926688 56855 103 25 1374 143 5 149 717 TBC1D15,TPH2,MRS2P2
SE_02_155000144 chr12:72262877-72284926 22049 144 11 513 24 1 220 585 TRHDE-AS1,TRHDE
SE_02_155000167 chr12:75699568-75725038 25470 167 12 754 20 2 63 0 KRR1
SE_02_155000050 chr12:78141494-78211792 70298 50 27 1866 25 6 315 787 NAV3
SE_02_155000038 chr12:78704389-78750623 46234 38 18 1195 0 2 85 0 SYT1
SE_02_155000070 chr12:78915647-78943961 28314 70 9 773 31 2 72 0 SYT1
SE_02_155000007 chr12:80536964-80626249 89285 7 28 2366 43 2 227 416 PTPRQ,MYF6
SE_02_155000077 chr12:81276516-81322932 46416 77 16 1193 60 2 115 268 PPFIA2,LOC102724663
SE_02_155000094 chr12:85347917-85394813 46896 94 18 1040 27 1 95 0 ALX1
SE_02_155000062 chr12:86221620-86262303 40683 62 14 1003 65 2 163 29 MGAT4C,NTS
SE_02_155000061 chr12:93098311-93147628 49317 61 17 1366 10 2 190 0 LOC643339,LOC102724933
SE_02_155000109 chr12:93166396-93205798 39402 109 13 1023 40 0 90 0 LOC102724933,LOC643339
SE_02_155000166 chr12:95197093-95219929 22836 166 10 517 57 1 108 559 FGD6,VEZT
SE_02_155000145 chr13:33173983-33204525 30542 145 16 881 49 11 69 72 STARD13
SE_02_155000079 chr13:33430572-33448608 18036 79 9 496 1 0 25 28 STARD13
SE_02_155000071 chr13:33523896-33547754 23858 71 15 616 17 0 37 27 STARD13
SE_02_155000134 chr13:36343545-36378027 34482 134 7 839 116 3 15 468 SPG20,SPG20-AS1,CCDC169-SOHLH2
SE_02_155000031 chr13:36477149-36544528 67379 31 25 1814 109 5 84 0 CCNA1
SE_02_155000147 chr13:45891217-45908286 17069 147 6 500 14 1 57 0 SIAH3
SE_02_155000040 chr13:46102695-46149292 46597 40 14 1331 111 4 131 716 CPB2,LCP1,ZC3H13,CPB2-AS1
SE_02_155000164 chr13:64085108-64114511 29403 164 12 807 0 0 36 0 LOC102723968,RNU6-81P
SE_02_155000058 chr14:102520194-102548642 28448 58 18 949 92 1 1 113 MIR4309,RCOR1,ANKRD9
SE_02_155000173 chr14:76513916-76551237 37321 173 17 1068 19 1 83 0 ESRRB,VASH1
SE_02_155000047 chr14:97205093-97240220 35127 47 12 1019 0 1 40 0 LOC101929241
SE_02_155000075 chr15:40069352-40103931 34579 75 20 1089 122 8 191 765 BMF,SRP14,SRP14-AS1
SE_02_155000022 chr16:23853209-23909664 56455 22 22 1603 218 9 118 0 PRKCB
SE_02_155000091 chr16:25790499-25811537 21038 91 8 528 3 2 28 0 HS3ST4
SE_02_155000129 chr16:26708653-26729077 20424 129 15 664 4 3 42 0 C16ORF82
SE_02_155000029 chr16:34571910-34586251 14341 29 4 0 1 0 0 0 LINC00273,FRG2DP
SE_02_155000002 chr16:46380694-46400545 19851 2 11 530 0 0 0 0 ANKRD26P1,SHCBP1
SE_02_155000143 chr16:53661546-53693281 31735 143 18 757 49 0 267 182 RPGRIP1L,FTO
SE_02_155000081 chr16:57834846-57859412 24566 81 13 651 44 4 10 0 LOC388282,KIFC3
SE_02_155000020 chr16:74533738-74574431 40693 20 15 1154 137 0 16 0 GLG1
SE_02_155000165 chr17:33265768-33291046 25278 165 14 741 3 2 146 0 ASIC2
SE_02_155000039 chr17:48981340-49023747 42407 39 20 942 53 5 231 305 IGF2BP1,SNF8,GIP
SE_02_155000116 chr17:81340332-81362672 22340 116 8 822 62 0 78 0 LINC00482,LOC100130370,TMEM105,BAHCC1,MIR4740,SLC38A10
SE_02_155000021 chr17:81386257-81430312 44055 21 14 1401 95 2 410 274 BAHCC1,MIR4740,LOC100130370,MIR3186
SE_02_155000102 chr18:46595430-46623604 28174 102 14 748 35 9 63 347 LOXHD1
SE_02_155000045 chr18:55315302-55366843 51541 45 27 1154 15 3 493 179 TCF4
SE_02_155000046 chr18:58929095-58975700 46605 46 19 1222 44 7 83 183 ZNF532,OACYLP
SE_02_155000073 chr18:76486096-76525575 39479 73 15 1024 15 1 310 557 C18ORF65,ZNF516,LINC00908
SE_02_155000035 chr2:133494664-133533720 39056 35 13 1145 23 3 105 38 NCKAP5
SE_02_155000088 chr2:141578982-141618898 39916 88 13 1128 2 3 85 0 LRP1B
SE_02_155000118 chr2:142534041-142559171 25130 118 10 653 2 0 54 0 KYNU
SE_02_155000108 chr2:151302050-151340271 38221 108 12 1108 119 1 29 155 LOC101929319,MIR4773-2,RBM43,TNFAIP6,NMI,MIR4773-1
SE_02_155000083 chr2:162741893-162765092 23199 83 16 544 7 2 51 0 KCNH7,LOC101929570
SE_02_155000059 chr2:165432873-165473280 40407 59 19 980 55 1 134 39 CSRNP3
SE_02_155000084 chr2:165564900-165619469 54569 84 21 1221 67 2 183 82 CSRNP3
SE_02_155000036 chr2:16669044-16701342 32298 36 12 883 46 1 63 0 FAM49A
SE_02_155000150 chr2:175366359-175414751 48392 150 16 1267 87 5 247 0 ATP5G3
SE_02_155000074 chr2:176650133-176682026 31893 74 13 878 91 8 223 43 LINC01117,MIR1246,LINC01116
SE_02_155000078 chr2:177138828-177167197 28369 78 19 603 34 1 162 0 HNRNPA3,MIR4444-1
SE_02_155000060 chr2:182890169-182942622 52453 60 18 1319 117 2 79 232 NCKAP1,FRZB
SE_02_155000016 chr2:183002394-183038458 36064 16 18 853 81 0 110 281 NCKAP1,DUSP19
SE_02_155000041 chr2:197058277-197097001 38724 41 16 970 82 4 119 307 ANKRD44,PGAP1
SE_02_155000179 chr2:201401414-201436722 35308 179 13 825 84 0 48 74 TRAK2,STRADB,ALS2CR12
SE_02_155000043 chr2:212892065-212914744 22679 43 9 638 2 0 131 0 MIR4776-1,MIR4776-2
SE_02_155000076 chr2:215769470-215798600 29130 76 18 797 22 0 101 85 LINC00607
SE_02_155000110 chr2:217313665-217340537 26872 110 9 667 29 0 76 210 DIRC3
SE_02_155000171 chr2:218002831-218019804 16973 171 13 458 24 3 87 90 RUFY4,CXCR2P1
SE_02_155000128 chr2:225786355-225808875 22520 128 11 540 1 0 26 0 LOC646736
SE_02_155000064 chr2:227929096-227961266 32170 64 11 904 50 2 24 0 DAW1
SE_02_155000096 chr2:66554835-66584544 29709 96 9 713 8 1 533 450 LOC100507073,MEIS1
SE_02_155000127 chr2:72506235-72530274 24039 127 14 505 18 2 89 84 EXOC6B
SE_02_155000142 chr20:17161084-17190218 29134 142 10 910 82 1 39 0 PCSK2
SE_02_155000069 chr20:21553662-21584844 31182 69 16 870 48 3 96 0 LOC101929625,NKX2-2
SE_02_155000049 chr20:4465774-4493170 27396 49 9 752 24 1 46 0 PRNP
SE_02_155000119 chr21:16748683-16796884 48201 119 23 1270 2 1 127 0 MIR125B2
SE_02_155000013 chr21:41063020-41113995 50975 13 17 1646 54 4 0 0 LINC00323
SE_02_155000063 chr21:44907512-44933983 26471 63 6 1018 119 6 4 1339 LINC01547,ITGB2-AS1,ITGB2,FAM207A,PTTG1IP
SE_02_155000124 chr21:8228791-8237557 8766 124 6 0 0 0 0 0 RNA28S5,MIR6724-1,MIR3687-1,MIR3648-1,RNA5-8S5,RNA18S5
SE_02_155000155 chr21:8415308-8420451 5143 155 5 0 0 0 0 0 LOC100507412,RNA45S5
SE_02_155000112 chr21:8456066-8464917 8851 112 7 0 0 0 0 0 RNA45S5
SE_02_155000131 chr3:156593428-156618309 24881 131 9 623 78 1 76 0 SSR3
SE_02_155000115 chr3:177571668-177620128 48460 115 12 1279 100 14 93 0 LINC00578
SE_02_155000093 chr3:178055920-178110553 54633 93 27 1491 5 5 121 0 KCCAT211
SE_02_155000146 chr3:189490323-189508836 18513 146 12 542 5 1 36 0 TP63
SE_02_155000135 chr3:190373849-190402940 29091 135 10 852 93 4 75 171 CLDN16,TMEM207
SE_02_155000132 chr3:193744802-193789297 44495 132 13 1281 13 2 129 0 OPA1-AS1
SE_02_155000104 chr3:195181753-195219869 38116 104 13 1052 36 3 17 69 XXYLT1,MIR3137,XXYLT1-AS2
SE_02_155000082 chr3:34256660-34296049 39389 82 21 1106 9 0 126 0 PDCD6IP
SE_02_155000001 chr3:93470365-93470801 436 1 1 0 0 0 0 0 PROS1
SE_02_155000139 chr4:146454267-146497481 43214 139 16 945 49 1 149 0 SLC10A7,MIR7849
SE_02_155000086 chr4:17084298-17116510 32212 86 10 954 51 3 72 0 LOC101929123
SE_02_155000028 chr4:40176208-40208760 32552 28 12 941 59 4 55 106 RHOH
SE_02_155000004 chr4:49709214-49712043 2829 4 1 0 0 0 0 0 CWH43,OCIAD2
SE_02_155000015 chr4:61434754-61507317 72563 15 31 1868 15 2 140 28 ADGRL3
SE_02_155000163 chr5:37552142-37581910 29768 163 12 656 55 1 72 0 WDR70
SE_02_155000151 chr5:40192066-40223990 31924 151 17 964 69 1 18 0 LINC00603
SE_02_155000048 chr6:110265473-110300179 34706 48 11 854 107 3 81 53 METTL24
SE_02_155000027 chr6:110321251-110370431 49180 27 15 1300 97 7 151 273 METTL24,DDO
SE_02_155000008 chr6:118129794-118217157 87363 8 26 2122 91 19 229 47 SLC35F1
SE_02_155000105 chr6:26120324-26156179 35855 105 16 969 105 25 75 344 HIST1H2AC,HIST1H2BC,HFE,HIST1H2BE,HIST1H4E,HIST1H2BF,HIST1H2BD,HIST1H4D,HIST1H1E,HIST1H1T,HIST1H4C,HIST1H2AD
SE_02_155000098 chr6:43847064-43879902 32838 98 11 994 51 8 119 272 LINC01512
SE_02_155000052 chr6:97438433-97474979 36546 52 13 781 36 1 83 0 LOC101927314
SE_02_155000095 chr6:98823385-98846418 23033 95 8 533 34 0 440 607 POU3F2
SE_02_155000111 chr7:116492322-116530950 38628 111 13 1009 149 11 171 1136 CAV1,CAV2
SE_02_155000130 chr7:117957954-117984200 26246 130 11 678 31 6 80 0 CTTNBP2
SE_02_155000097 chr7:122960068-122984812 24744 97 10 653 52 3 46 0 TAS2R16
SE_02_155000009 chr7:130904411-130947035 42624 9 13 1106 68 1 157 277 LINC-PINT,LOC100506860,MIR29A,MIR29B1
SE_02_155000025 chr7:131007723-131077596 69873 25 27 1849 137 7 76 37 LINC-PINT,MKLN1
SE_02_155000152 chr7:150339454-150366085 26631 152 15 700 124 5 18 356 RARRES2,REPIN1,ZNF775,LRRC61,LOC728743,ZBED6CL,ACTR3C
SE_02_155000106 chr7:18755040-18795216 40176 106 14 1325 47 6 230 159 HDAC9
SE_02_155000176 chr7:3303098-3344694 41596 176 12 1640 182 13 146 0 SDK1
SE_02_155000051 chr7:34040174-34071756 31582 51 13 811 36 6 151 249 BMPER
SE_02_155000170 chr7:84131160-84162928 31768 170 14 869 45 8 88 31 SEMA3A
SE_02_155000148 chr7:85065321-85105363 40042 148 16 1019 11 6 133 139 SEMA3D
SE_02_155000136 chr7:94347643-94377010 29367 136 10 704 15 9 124 0 COL1A2
SE_02_155000065 chr8:111644730-111664523 19793 65 10 493 0 0 22 0 LINC01609
SE_02_155000141 chr8:125116196-125151662 35466 141 10 890 40 1 125 31 NSMCE2,KIAA0196
SE_02_155000125 chr8:125885654-125936491 50837 125 18 1285 6 8 85 87 LINC00861
SE_02_155000019 chr8:126387328-126420625 33297 19 13 1072 42 1 42 0 LOC101927657
SE_02_155000121 chr8:126554183-126572739 18556 121 9 519 20 7 151 771 FAM84B
SE_02_155000054 chr8:126808518-126834456 25938 54 15 639 4 7 51 0 PCAT1
SE_02_155000005 chr8:12864800-12955351 90551 5 31 3597 221 8 124 50 KIAA1456
SE_02_155000159 chr8:130438346-130458842 20496 159 11 543 44 4 70 164 ASAP1
SE_02_155000180 chr8:23965683-23992211 26528 180 10 747 0 0 91 0 STC1
SE_02_155000010 chr8:27168749-27226309 57560 10 18 1504 86 4 52 0 STMN4,TRIM35
SE_02_155000080 chr8:37543220-37567738 24518 80 11 666 13 4 230 0 LINC01605
SE_02_155000085 chr8:54453866-54485807 31941 85 15 907 38 3 130 632 SOX17
SE_02_155000120 chr8:6250601-6265599 14998 120 10 932 4 1 24 0 LOC100287015
SE_02_155000053 chr8:64555679-64590863 35184 53 14 807 28 1 341 917 LOC401463,BHLHE22
SE_02_155000090 chr8:64829200-64853270 24070 90 10 548 29 0 23 0 CYP7B1
SE_02_155000087 chr8:69858115-69876922 18807 87 6 559 26 1 13 0 SLCO5A1
SE_02_155000158 chr8:70988775-71012309 23534 158 9 633 122 1 32 0 XKR9
SE_02_155000172 chr8:71348352-71367943 19591 172 7 450 8 2 250 223 EYA1
SE_02_155000026 chr8:74108276-74131293 23017 26 10 709 14 4 35 0 LY96
SE_02_155000117 chr8:78228464-78260253 31789 117 12 750 15 0 162 0 PKIA
SE_02_155000066 chr8:80863858-80884700 20842 66 10 465 18 0 61 85 ZNF704
SE_02_155000174 chr8:82046021-82074238 28217 174 7 724 22 1 45 0 SNX16
SE_02_155000137 chr8:91977310-92021244 43934 137 9 1048 21 0 300 493 RUNX1T1
SE_02_155000101 chr9:115849065-115887370 38305 101 13 1080 12 2 65 0 LINC00474
SE_02_155000154 chr9:129480254-129500381 20127 154 8 561 30 0 72 419 LINC00963
SE_02_155000072 chr9:129932161-129970795 38634 72 15 1005 95 2 42 108 FNBP1,MIR6855
SE_02_155000175 chr9:72971029-72997099 26070 175 17 633 18 2 52 0 ALDH1A1
SE_02_155000126 chr9:73131459-73183978 52519 126 14 1453 78 10 116 499 ANXA1
SE_02_155000056 chr9:77632857-77649275 16418 56 4 427 6 2 12 232 GNA14
SE_02_155000032 chr9:86525847-86564143 38296 32 16 1119 14 2 19 0 ZCCHC6
SE_02_155000068 chr9:87464534-87500580 36046 68 14 1097 108 4 52 327 DAPK1
SE_02_155000140 chr9:88733038-88774565 41527 140 9 1308 29 3 46 52 MIR4289
SE_02_155000149 chrUn_GL000220v1:128275-136318 8043 149 4 0 0 0 0 0
SE_02_155000034 chrUn_KI270333v1:0-2699 2699 34 1 0 0 0 0 0
SE_02_155000067 chrUn_KI270337v1:0-1121 1121 67 1 0 0 0 0 0
SE_02_155000178 chrUn_KI270438v1:104669-110147 5478 178 2 0 0 0 0 0
SE_02_155000003 chrUn_KI270467v1:749-3920 3171 3 1 0 0 0 0 0
SE_02_155000057 chrX:124207077-124258118 51041 57 29 1012 13 5 212 0 SH2D1A
SE_02_155000160 chrX:19170218-19189663 19445 160 13 459 28 2 0 0 ADGRG2
SE_02_155000006 chrX:52476169-52536850 60681 6 11 0 5 0 0 1735 XAGE1E,XAGE1B
SE_02_155000157 chrX:69278503-69319872 41369 157 20 941 14 1 202 0 LINC00269,PJA1
SE_02_155000153 chrX:95693907-95735725 41818 153 17 805 0 0 126 0 BRDTP1,DIAPH2

SE annotation visualization


Information description of sample and annotation

Case ID: Name:GSM2527268
Input ID: Name:GSM2527269
Common SNP: dbSNP
eQTL: GTEx, HaploReg v4.1, PancanQTL
Risk SNP : GWAS Catalog, GWASdb v2.0
TFBS: TFBS Conserved of UCSC
CRISPR/Cas9 target site: CRISPR Targets of UCSC

Software and parameters used

Read Mapping: bowtie(v2.4.4) -p 10 -x -S -U
Peak Calling: macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb