SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000186081
Gene: KRT5 Gene type: protein_coding
Strand: - External links:
Genomic region: chr12:52514575-52520530 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_050600066 chr12:52487536-52544764 Sample_02_0506 Esophagus TE5_1 66 17 2101 299 5 49 1741 KRT5,KRT6A,KRT71,KRT74,KRT6C,KRT6B
SE_02_051700069 chr12:52487537-52543372 Sample_02_0517 Esophagus TE5 69 14 2060 292 3 48 1554 KRT5,KRT6A,KRT74,KRT6C,KRT71,KRT6B
SE_02_047900044 chr12:52487718-52541727 Sample_02_0479 Head and neck SCC25 44 22 1996 285 3 48 1524 KRT5,KRT6A,KRT74,KRT6C,KRT71,KRT6B
SE_02_050500043 chr12:52487744-52544475 Sample_02_0505 Esophagus KYSE70_1 43 21 2071 289 3 48 1646 KRT5,KRT6A,KRT71,KRT74,KRT6C,KRT6B
SE_02_051600044 chr12:52488430-52544475 Sample_02_0516 Esophagus KYSE70 44 20 2031 287 3 47 1526 KRT5,KRT6A,KRT71,KRT74,KRT6C,KRT6B
SE_02_066000230 chr12:52489294-52529530 Sample_02_0660 Mammary gland MCF10DCIS 230 14 1470 214 2 44 1353 KRT5,KRT6A,KRT74,KRT6C,KRT71,KRT6B
SE_02_066100122 chr12:52489508-52529297 Sample_02_0661 Mammary gland MCF10DCIS-TetTCF7 122 18 1454 210 2 44 1353 KRT5,KRT6A,KRT74,KRT6C,KRT71,KRT6B
SE_02_135900041 chr12:52489624-52526025 Sample_02_1359 Other IC8-deltaEGF-L1596H_GSI_4h 41 9 1337 194 2 44 1353 KRT5,KRT6A,KRT74,KRT6C,KRT71,KRT6B
SE_02_135700072 chr12:52490181-52525798 Sample_02_1357 Other IC8-deltaEGF-L1596H_GSI_0h 72 12 1302 189 2 35 1294 KRT5,KRT6A,KRT74,KRT6C,KRT71,KRT6B
SE_02_135800036 chr12:52490238-52526130 Sample_02_1358 Other IC8-deltaEGF-L1596H_GSI_2h 36 9 1313 189 2 35 1289 KRT5,KRT6A,KRT74,KRT6C,KRT71,KRT6B
SE_02_153200256 chr12:52490562-52525865 Sample_02_1532 Mammary gland MCF10A 256 4 1291 188 2 35 1255 KRT5,KRT6A,KRT74,KRT6C,KRT71,KRT6B
SE_02_059600031 chr12:52490757-52526360 Sample_02_0596 Mammary gland MCF10A_ DMSO 31 4 1294 189 2 22 1229 KRT5,KRT6A,KRT74,KRT6C,KRT71,KRT6B
SE_02_060000034 chr12:52491158-52526230 Sample_02_0600 Mammary gland MCF10A_p53shRNA_DMSO 34 7 1267 185 2 22 1178 KRT5,KRT6A,KRT74,KRT6C,KRT71,KRT6B
SE_02_112100014 chr12:52491201-52539699 Sample_02_1121 Neonatal foreskin keratinocytes_Mi2KD 14 17 1744 256 2 22 1171 KRT5,KRT6A,KRT74,KRT6C,KRT71,KRT6B,KRT7,KRT75
SE_02_005700252 chr12:52491261-52526249 Sample_02_0057 Mammary gland vHMEC 252 7 1260 184 2 22 1162 KRT5,KRT6A,KRT6C,KRT71,KRT6B,KRT74
SE_02_116800375 chr12:52491357-52525687 Sample_02_1168 Biliary H69_TGF Vehicle_2 375 9 1239 183 2 22 1150 KRT5,KRT6A,KRT74,KRT6C,KRT71,KRT6B
SE_02_060200067 chr12:52491410-52526083 Sample_02_0602 Mammary gland MCF10A_p63shRNA_DMSO 67 6 1252 184 2 22 1143 KRT5,KRT6A,KRT74,KRT6C,KRT71,KRT6B
SE_02_107300125 chr12:52491636-52526404 Sample_02_1073 Keratinocyte keratinocytes stem cell 125 4 1247 184 2 22 1107 KRT5,KRT6A,KRT74,KRT6C,KRT71,KRT6B,KRT75
SE_02_116600380 chr12:52491765-52523434 Sample_02_1166 Biliary H69_TGF beta_16h_1 380 8 1138 178 2 21 1087 KRT5,KRT6A,KRT6C,KRT6B,KRT71
SE_02_116900400 chr12:52492167-52524293 Sample_02_1169 Biliary H69_TGF beta_16h_2 400 5 1149 177 2 21 1056 KRT5,KRT6A,KRT74,KRT6C,KRT71,KRT6B
SE_02_116700396 chr12:52492295-52524270 Sample_02_1167 Biliary H69_TGF Vehicle_1 396 7 1146 177 2 21 1056 KRT5,KRT6A,KRT74,KRT6C,KRT71,KRT6B
SE_02_105600189 chr12:52492462-52525567 Sample_02_1056 Esophagus ChTRT 189 5 1191 178 2 21 1050 KRT5,KRT6A,KRT74,KRT6C,KRT71,KRT6B
SE_02_105700238 chr12:52492679-52525652 Sample_02_1057 Esophagus GihTRT 238 5 1178 174 2 21 1006 KRT5,KRT6A,KRT74,KRT6C,KRT71,KRT6B
SE_02_028000171 chr12:52492987-52525281 Sample_02_0280 Mammary gland SUM159_DMSO_24h 171 4 1149 171 2 15 932 KRT5,KRT6A,KRT6C,KRT71,KRT6B,KRT74
SE_01_004500038 chr12:52493062-52526626 Sample_01_0045 Mammary gland mammary-epithelial-cell 38 5 1194 177 2 13 909 KRT5,KRT6A,KRT6C,KRT71,KRT6B,KRT74
SE_02_151500547 chr12:52493293-52525137 Sample_02_1515 Non-transformed mammary epithelial IMEC WT 547 12 1131 171 2 11 866 KRT5,KRT6A,KRT74,KRT6C,KRT71,KRT6B
SE_02_052100197 chr12:52494733-52526026 Sample_02_0521 Colon SW480 197 5 1130 172 2 11 832 KRT5,KRT74,KRT6A,KRT6C,KRT71,KRT6B
SE_02_151600345 chr12:52494740-52525415 Sample_02_1516 Non-transformed mammary epithelial IMEC MYC 345 11 1106 169 2 11 832 KRT5,KRT74,KRT6A,KRT6C,KRT71,KRT6B
SE_02_003801215 chr12:52494753-52507738 Sample_02_0038 Embryo DE 1215 2 423 67 0 0 0 KRT6C,KRT5,KRT6B,KRT6A,KRT71
SE_02_086800212 chr12:52494777-52545160 Sample_02_0868 Bone marrow Bone marrow derived hMSC_d10 212 17 1789 262 5 12 1058 KRT5,KRT71,KRT74,KRT6A,KRT6C,KRT6B
SE_02_136000259 chr12:52494871-52539800 Sample_02_1360 Bladder UMUC1_sonic_pSIN-puro_EV 259 7 1617 244 2 11 832 KRT5,KRT74,KRT6A,KRT6C,KRT71,KRT6B
SE_02_102300120 chr12:52495416-52525545 Sample_02_1023 Mammary gland SUM159_BRD7_KO 120 7 1088 168 2 11 832 KRT5,KRT74,KRT6A,KRT6C,KRT71,KRT6B
SE_02_010500083 chr12:52511040-52526953 Sample_02_0105 Skin neonatal_keratinocytes 83 1 638 86 2 11 832 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_02_039600255 chr12:52511821-52548690 Sample_02_0396 Skin NHEK-D 255 11 1379 176 6 21 1403 KRT5,KRT71,KRT6C,KRT6A,KRT74
SE_01_006100054 chr12:52511864-52540440 Sample_01_0061 Prostate RWPE1 54 6 1093 146 2 11 832 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_02_029400671 chr12:52512481-52540050 Sample_02_0294 Pancreatic L3-6_DMSO 671 2 1048 138 2 11 832 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_02_048000180 chr12:52512633-52539728 Sample_02_0480 Gingival epithelial HGEP 180 5 1025 136 2 11 832 KRT5,KRT6C,KRT6A,KRT71,KRT74,KRT75,KRT6B
SE_01_004100119 chr12:52512737-52526509 Sample_01_0041 Skin keratinocyte 119 2 547 66 2 11 832 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_02_053000978 chr12:52513412-52526420 Sample_02_0530 Mammary gland MCF10A 978 6 514 55 2 11 832 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_02_022800388 chr12:52513505-52541257 Sample_02_0228 Oesophagus KYSE510 388 5 1032 129 2 11 832 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_02_050400369 chr12:52513736-52544372 Sample_02_0504 Esophagus KYSE510_1 369 13 1111 133 3 11 933 KRT5,KRT71,KRT6C,KRT6A,KRT74
SE_02_154100276 chr12:52514689-52539192 Sample_02_1541 Nasopharyngeal HNE1 276 5 913 112 2 11 789 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_02_102600147 chr12:52514757-52541769 Sample_02_1026 Esophagus KYSE200 147 11 1005 121 3 11 777 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_02_064800825 chr12:52515004-52526226 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 825 4 441 41 2 11 743 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_02_009700296 chr12:52515014-52525352 Sample_02_0097 Foreskin Epidermal-Stem-Cells_shCTRL 296 1 408 38 2 11 738 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_02_000500313 chr12:52515757-52527046 Sample_02_0005 Cervical cervical-cancer_KDM5C 313 1 436 43 1 11 634 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_02_136200792 chr12:52515849-52540475 Sample_02_1362 Bladder UMUC1_sonic_pSIN-puro H1146A/E1148A-mutant UTX 792 4 922 111 1 9 625 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_02_035600193 chr12:52515862-52526846 Sample_02_0356 Colon Sw480 193 1 426 42 1 9 625 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_02_136101265 chr12:52515931-52540302 Sample_02_1361 Bladder UMUC1_sonic_pSIN-puro_WTUTX 1265 5 908 111 1 9 617 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_02_060100069 chr12:52515974-52526203 Sample_02_0601 Mammary gland MCF10A_p53shRNA_Nutlin3A 69 3 398 37 1 9 609 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_02_060400092 chr12:52515998-52526234 Sample_02_0604 Mammary gland MCF10A_scrshRNA_DMSO 92 3 398 37 1 9 606 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_02_094500097 chr12:52516098-52539965 Sample_02_0945 Brain SF767 97 6 893 110 1 9 596 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_02_065200614 chr12:52516195-52526013 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 614 5 392 36 1 9 586 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_02_060300214 chr12:52516273-52526213 Sample_02_0603 Mammary gland MCF10A_p63shRNA_Nutlin3A 214 3 390 34 1 9 580 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_02_005600432 chr12:52516306-52544667 Sample_02_0056 Mammary gland HMEC 432 6 1029 120 4 9 738 KRT5,KRT71,KRT6C,KRT6A,KRT74
SE_02_021600772 chr12:52516437-52526266 Sample_02_0216 Skin NHEK_scramble 772 5 387 32 1 9 552 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_01_006200084 chr12:52516438-52526176 Sample_01_0062 Prostate RWPE2 84 2 387 32 1 9 552 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_02_072500108 chr12:52516665-52526106 Sample_02_0725 Mammary gland MCF10A-YAP5SA_ctrl 108 6 373 32 1 8 535 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_02_072600277 chr12:52516669-52524814 Sample_02_0726 Mammary gland MCF10A-YAP5SA_plusDOX 277 4 326 28 1 8 533 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_02_066600213 chr12:52516669-52525015 Sample_02_0666 Prostate RWPE1 Lacz rep1 213 4 331 28 1 8 533 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_03_000100146 chr12:52517023-52526492 Sample_03_0001 Foreskin foreskin-keratinocyte 146 1 369 32 1 7 478 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_02_112000169 chr12:52517308-52526534 Sample_02_1120 Neonatal foreskin keratinocytes_CTR 169 7 364 31 1 7 444 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_02_035800389 chr12:52517340-52553781 Sample_02_0358 Colon LS180 389 3 1329 157 5 38 1402 KRT5,KRT71,KRT6C,KRT74,KRT72,KRT6A
SE_02_059500101 chr12:52518267-52526141 Sample_02_0595 Mammary gland MCF10A_scrshRNA_Nutlin3A 101 2 327 26 1 4 317 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_02_059700130 chr12:52518330-52526035 Sample_02_0597 Mammary gland MCF10A_Nutlin3A 130 2 322 26 1 4 304 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_03_000200220 chr12:52518616-52524006 Sample_03_0002 Foreskin foreskin-keratinocyte-calcium2.5day 220 1 234 20 1 4 303 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_02_050300125 chr12:52518618-52540289 Sample_02_0503 Esophagus KYSE140_1 125 2 824 99 1 4 303 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_02_051500124 chr12:52518618-52540289 Sample_02_0515 Esophagus KYSE140 124 2 824 99 1 4 303 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_02_102500436 chr12:52518628-52540357 Sample_02_1025 Esophagus KYSE150 436 5 826 99 1 4 303 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_02_102700436 chr12:52518698-52544438 Sample_02_1027 Esophagus KYSE180_1 436 11 945 109 2 4 423 KRT5,KRT71,KRT6C,KRT6A,KRT74
SE_02_094800789 chr12:52518713-52539118 Sample_02_0948 Pharyng Detroit562 789 2 774 96 1 4 303 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_02_094700312 chr12:52518838-52538968 Sample_02_0947 Tongue Cal27 312 2 767 95 1 4 293 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_02_153900575 chr12:52518992-52540874 Sample_02_1539 Nasopharyngeal C666-1 575 3 836 101 1 4 262 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_02_049101043 chr12:52519136-52539785 Sample_02_0491 Pharyng Detroit 562-Control 1043 3 789 96 1 1 235 KRT5,KRT6C,KRT6A,KRT71,KRT74
SE_02_133800353 chr12:52520579-52526184 Sample_02_1338 Esophagus KYSE180 353 3 237 19 0 0 5 KRT6C,KRT5,KRT6A,KRT71,KRT74
SE_02_065300275 chr12:52520608-52525789 Sample_02_0653 Tracheobronchial epithelial HTBE_H5N1_03h 275 2 224 19 0 0 1 KRT6C,KRT5,KRT6A,KRT71,KRT74
SE_02_044200696 chr12:52521003-52545952 Sample_02_0442 Bone MG63.3 696 11 890 109 3 1 282 KRT71,KRT6C,KRT5,KRT6A,KRT74
SE_02_026600182 chr12:52521401-52525960 Sample_02_0266 Bronchial HBE_Primary human bronchial epithelial cells_ 182 4 185 14 0 0 0 KRT6C,KRT5,KRT6A,KRT71,KRT74
SE_02_050700131 chr12:52521432-52540503 Sample_02_0507 Esophagus TE7_1 131 8 707 88 0 0 0 KRT6C,KRT5,KRT6A,KRT71,KRT74
SE_02_022700109 chr12:52521638-52540585 Sample_02_0227 Oesophagus TE7 109 5 699 89 0 0 0 KRT6C,KRT5,KRT6A,KRT71,KRT74
Genomic distribution of SEs associated with KRT5
Genome Browser

The strength of the tissue affected by the gene

Expression of KRT5

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)